Wall clock time and date at job start Tue Mar 31 2020 05:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00269 * 2 1 4 4 H 1.48504 * 109.47113 * 269.99541 * 3 2 1 5 5 H 1.48494 * 109.47162 * 29.99877 * 3 2 1 6 6 H 1.48502 * 109.47264 * 150.00109 * 3 2 1 7 7 C 1.37880 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00096 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99994 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47068 * 180.02562 * 9 7 2 11 11 C 1.46496 * 120.00099 * 88.55204 * 10 9 7 12 12 C 1.53005 * 109.47353 * 269.99750 * 11 10 9 13 13 N 1.46899 * 109.47362 * 179.97438 * 12 11 10 14 14 C 1.47015 * 110.99584 * 46.32309 * 13 12 11 15 15 C 1.53097 * 109.25814 * 182.34965 * 14 13 12 16 16 O 1.43018 * 109.29272 * 303.21835 * 15 14 13 17 17 C 1.43015 * 113.73735 * 58.64757 * 16 15 14 18 18 C 1.47018 * 110.99987 * 170.00448 * 13 12 11 19 19 C 1.34781 * 120.00027 * 268.55451 * 10 9 7 20 20 O 1.21276 * 120.00155 * 173.27058 * 19 10 9 21 21 C 1.50695 * 119.99696 * 353.27170 * 19 10 9 22 22 C 1.53181 * 109.54630 * 287.65546 * 21 19 10 23 23 C 1.53091 * 109.16687 * 183.15185 * 22 21 19 24 24 O 1.42902 * 109.41097 * 57.60990 * 23 22 21 25 25 C 1.42901 * 114.10037 * 298.83914 * 24 23 22 26 26 C 1.53093 * 109.41417 * 61.15924 * 25 24 23 27 27 H 0.97005 * 119.99209 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46806 * 59.99946 * 9 7 2 29 29 H 1.09007 * 109.46653 * 299.99833 * 9 7 2 30 30 H 1.09006 * 109.47072 * 150.00166 * 11 10 9 31 31 H 1.08998 * 109.47271 * 30.00175 * 11 10 9 32 32 H 1.09006 * 109.46691 * 60.00183 * 12 11 10 33 33 H 1.08998 * 109.47279 * 300.00420 * 12 11 10 34 34 H 1.08998 * 109.47741 * 62.43640 * 14 13 12 35 35 H 1.09004 * 109.54620 * 302.30749 * 14 13 12 36 36 H 1.08999 * 109.50981 * 183.25657 * 15 14 13 37 37 H 1.08999 * 109.50446 * 63.17338 * 15 14 13 38 38 H 1.09003 * 109.50755 * 61.26170 * 17 16 15 39 39 H 1.09002 * 109.50982 * 181.35263 * 17 16 15 40 40 H 1.08995 * 109.50470 * 57.67137 * 18 13 12 41 41 H 1.09002 * 109.50358 * 297.53831 * 18 13 12 42 42 H 1.09005 * 109.54831 * 47.92271 * 21 19 10 43 43 H 1.09001 * 109.51783 * 303.06134 * 22 21 19 44 44 H 1.09007 * 109.52244 * 63.24850 * 22 21 19 45 45 H 1.09001 * 109.48030 * 297.62823 * 23 22 21 46 46 H 1.08995 * 109.48248 * 177.58731 * 23 22 21 47 47 H 1.09002 * 109.48187 * 301.17965 * 25 24 23 48 48 H 1.08998 * 109.49719 * 181.14802 * 25 24 23 49 49 H 1.08995 * 109.52516 * 182.48663 * 26 25 24 50 50 H 1.09004 * 109.51960 * 62.30021 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.2142 -3.2764 -1.2674 12 6 2.9293 -4.0012 -1.6731 13 7 3.1441 -4.7036 -2.9453 14 6 4.4128 -5.4461 -2.9293 15 6 4.6246 -6.1134 -4.2909 16 8 3.5067 -6.9562 -4.5830 17 6 2.2551 -6.2645 -4.6076 18 6 2.0188 -5.5997 -3.2489 19 6 4.2517 -3.2012 1.1678 20 8 4.5379 -4.3797 1.1744 21 6 4.1777 -2.4365 2.4642 22 6 5.3779 -1.4905 2.5705 23 6 5.3366 -0.7764 3.9240 24 8 5.3371 -1.7466 4.9731 25 6 4.2131 -2.6288 4.9525 26 6 4.2092 -3.4174 3.6403 27 1 -0.4849 0.8402 -0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8752 -0.6805 -0.8889 30 1 5.0190 -4.0021 -1.1499 31 1 4.4844 -2.5561 -2.0395 32 1 2.1245 -3.2754 -1.7906 33 1 2.6591 -4.7215 -0.9010 34 1 4.3777 -6.2091 -2.1517 35 1 5.2350 -4.7590 -2.7289 36 1 5.5350 -6.7121 -4.2651 37 1 4.7143 -5.3476 -5.0614 38 1 2.2755 -5.5027 -5.3869 39 1 1.4519 -6.9726 -4.8116 40 1 1.0937 -5.0242 -3.2811 41 1 1.9450 -6.3657 -2.4768 42 1 3.2533 -1.8597 2.4952 43 1 6.3015 -2.0635 2.4888 44 1 5.3330 -0.7537 1.7684 45 1 4.4321 -0.1716 3.9885 46 1 6.2115 -0.1338 4.0227 47 1 3.2939 -2.0483 5.0305 48 1 4.2784 -3.3208 5.7922 49 1 3.3286 -4.0587 3.6034 50 1 5.1093 -4.0293 3.5804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343039328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:43 Heat of formation + Delta-G solvation = -120.185002 kcal Electronic energy + Delta-G solvation = -29838.007758 eV Core-core repulsion = 25865.371505 eV Total energy + Delta-G solvation = -3972.636252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.11986 -39.43784 -38.29571 -36.15812 -34.95392 -33.42206 -32.60250 -31.22795 -30.95467 -29.74453 -27.93828 -26.54979 -25.01121 -23.98428 -23.40120 -22.62374 -22.01264 -20.39459 -20.00491 -18.47944 -17.17633 -16.68488 -16.44759 -16.15469 -15.98257 -15.84585 -15.30171 -15.03369 -14.88734 -14.84829 -14.62989 -14.36393 -14.12409 -13.74623 -13.49232 -13.00169 -12.91359 -12.77067 -12.44803 -12.28854 -12.20259 -11.96873 -11.82878 -11.47446 -11.33572 -11.27357 -11.10661 -10.95723 -10.75320 -10.56465 -10.53025 -10.39477 -10.25686 -10.21913 -9.66825 -9.63853 -9.58957 -9.03026 -8.78152 -8.19202 -7.88651 -6.29088 -4.30975 3.10754 3.16420 3.17913 3.20642 3.56093 3.85075 3.98956 4.14204 4.18882 4.88866 4.91865 4.97570 5.00152 5.04525 5.06821 5.10982 5.15487 5.20066 5.32114 5.38883 5.42370 5.54462 5.57411 5.60434 5.66983 5.70133 5.77397 5.80798 5.85987 5.88963 5.93794 5.95133 5.97843 6.01493 6.10420 6.27358 6.30528 6.34026 6.53109 6.57980 6.62394 7.05155 7.07633 7.18202 7.28754 7.31821 7.36295 8.01255 8.31835 8.72971 8.81541 9.29799 10.83242 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010374 B = 0.004288 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.506540 B = 6528.472036 C = 8400.039778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.869 3.131 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.203 3.797 10 N -0.590 5.590 11 C 0.125 3.875 12 C 0.043 3.957 13 N -0.533 5.533 14 C 0.010 3.990 15 C 0.065 3.935 16 O -0.390 6.390 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.527 3.473 20 O -0.567 6.567 21 C -0.109 4.109 22 C -0.147 4.147 23 C 0.063 3.937 24 O -0.386 6.386 25 C 0.061 3.939 26 C -0.133 4.133 27 H 0.267 0.733 28 H 0.042 0.958 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.036 0.964 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.111 0.889 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.055 0.945 46 H 0.093 0.907 47 H 0.053 0.947 48 H 0.093 0.907 49 H 0.075 0.925 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.472 -4.910 -1.058 9.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.696 3.304 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.082 3.918 10 N -0.320 5.320 11 C 0.001 3.999 12 C -0.085 4.085 13 N -0.259 5.259 14 C -0.118 4.118 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.316 3.684 20 O -0.447 6.447 21 C -0.130 4.130 22 C -0.185 4.185 23 C -0.014 4.014 24 O -0.305 6.305 25 C -0.016 4.016 26 C -0.171 4.171 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.129 0.871 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.111 0.889 47 H 0.071 0.929 48 H 0.111 0.889 49 H 0.094 0.906 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.637 -5.229 -1.340 10.185 hybrid contribution -0.267 0.792 0.350 0.906 sum 8.370 -4.438 -0.989 9.525 Atomic orbital electron populations 1.69885 1.06218 1.27240 1.49241 1.24868 0.94710 0.98838 0.94209 0.86956 0.80386 0.84063 0.78994 1.19865 1.20861 1.18856 1.21364 0.88949 0.94981 1.52649 0.90299 1.20001 0.96099 0.77925 0.97821 1.47886 1.63925 1.15699 1.04518 1.21361 0.96526 0.96225 0.85792 1.22617 1.00102 0.97690 0.88134 1.62319 1.01742 1.27940 1.33870 1.22877 0.93904 0.97421 0.97613 1.22670 0.89144 0.93946 0.95464 1.87946 1.15481 1.35783 1.91624 1.22658 0.86079 0.96287 0.96127 1.22757 0.95359 0.95483 0.97398 1.20358 0.75833 0.86862 0.85368 1.90595 1.50573 1.16049 1.87467 1.21319 1.01345 0.97586 0.92790 1.22230 0.97985 0.99262 0.98988 1.22567 1.02220 0.90438 0.86147 1.87878 1.45843 1.46471 1.50340 1.22617 0.89042 0.92337 0.97572 1.21984 1.03889 0.97872 0.93343 0.92316 0.94074 0.95327 0.91104 0.90351 0.88267 0.94607 0.93879 0.89295 0.88789 0.92370 0.92272 0.88687 0.89359 0.94116 0.87148 0.91014 0.89758 0.92658 0.88864 0.92904 0.88915 0.90616 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.91 13.96 55.43 0.77 -24.14 16 2 C 0.08 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 18.95 27.47 -169.99 -4.67 14.28 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.26 -5.29 6.54 56.52 0.37 -4.92 16 7 C -0.54 -13.47 9.34 -34.44 -0.32 -13.79 16 8 H 0.08 2.21 7.53 -52.49 -0.40 1.82 16 9 C 0.20 4.20 3.80 -5.19 -0.02 4.18 16 10 N -0.59 -11.46 2.46 -175.06 -0.43 -11.89 16 11 C 0.12 2.20 4.67 -4.04 -0.02 2.18 16 12 C 0.04 0.77 5.59 -3.82 -0.02 0.75 16 13 N -0.53 -8.29 4.87 -234.30 -1.14 -9.44 16 14 C 0.01 0.14 4.94 -3.71 -0.02 0.12 16 15 C 0.06 0.78 7.01 37.21 0.26 1.04 16 16 O -0.39 -5.32 10.83 -35.23 -0.38 -5.71 16 17 C 0.07 0.80 7.01 37.21 0.26 1.06 16 18 C 0.02 0.26 5.63 -3.71 -0.02 0.24 16 19 C 0.53 10.34 6.89 -10.99 -0.08 10.26 16 20 O -0.57 -12.23 15.58 5.56 0.09 -12.14 16 21 C -0.11 -1.87 1.75 -91.59 -0.16 -2.03 16 22 C -0.15 -2.18 5.11 -26.59 -0.14 -2.31 16 23 C 0.06 0.84 6.84 37.20 0.25 1.10 16 24 O -0.39 -5.62 10.77 -35.23 -0.38 -5.99 16 25 C 0.06 0.82 6.84 37.21 0.25 1.07 16 26 C -0.13 -2.05 4.85 -26.59 -0.13 -2.18 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.04 0.82 3.51 -51.93 -0.18 0.64 16 29 H 0.03 0.58 7.34 -51.93 -0.38 0.20 16 30 H 0.07 1.21 5.66 -51.93 -0.29 0.92 16 31 H 0.08 1.30 7.91 -51.93 -0.41 0.89 16 32 H 0.10 2.05 7.08 -51.93 -0.37 1.69 16 33 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.16 6.05 -51.93 -0.31 0.84 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.11 2.05 7.29 -51.93 -0.38 1.67 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.08 1.26 6.05 -51.93 -0.31 0.94 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 50 H 0.08 1.25 7.87 -51.93 -0.41 0.84 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -29.61 380.95 -8.92 -38.52 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.53 Total: 7.17 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 0.01 Total: 3.60 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.80 Total: -45.46 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.67 Total: -23.84 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.67 Total: 14.28 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.61 -8.92 -38.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343039328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.662 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds