Wall clock time and date at job start Tue Mar 31 2020 05:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21279 * 119.99910 * 2 1 4 4 N 1.34779 * 119.99725 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99625 * 180.02562 * 4 2 1 6 6 H 1.09008 * 109.46745 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46884 * 299.99118 * 5 4 2 8 8 C 1.53002 * 109.47372 * 295.00555 * 7 5 4 9 9 C 1.52996 * 109.47154 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46994 * 64.99875 * 9 8 7 11 11 C 1.52996 * 109.47142 * 184.99869 * 9 8 7 12 12 C 1.50694 * 109.47518 * 59.99445 * 5 4 2 13 13 O 1.21275 * 119.99961 * 340.00105 * 12 5 4 14 14 N 1.34777 * 119.99872 * 159.99721 * 12 5 4 15 15 C 1.47018 * 125.64981 * 0.02817 * 14 12 5 16 16 C 1.54325 * 107.40412 * 178.82520 * 15 14 12 17 17 C 1.55405 * 102.82616 * 337.97548 * 16 15 14 18 18 O 1.42894 * 110.89418 * 277.26698 * 17 16 15 19 19 C 1.50704 * 111.07313 * 153.48318 * 17 16 15 20 20 H 1.07997 * 120.00130 * 247.66801 * 19 17 16 21 21 C 1.37876 * 119.99522 * 67.66152 * 19 17 16 22 22 N 1.31520 * 120.00267 * 0.02562 * 21 19 17 23 23 Si 1.86805 * 120.00088 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46770 * 60.00138 * 23 21 19 25 25 H 1.48494 * 109.47223 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46900 * 300.00321 * 23 21 19 27 27 C 1.47426 * 125.64500 * 179.97438 * 14 12 5 28 28 H 1.08996 * 109.46874 * 269.99543 * 1 2 3 29 29 H 1.09000 * 109.47052 * 29.99835 * 1 2 3 30 30 H 1.08999 * 109.47123 * 149.99509 * 1 2 3 31 31 H 0.97005 * 119.99890 * 359.97438 * 4 2 1 32 32 H 1.09002 * 109.47006 * 55.00515 * 7 5 4 33 33 H 1.08997 * 109.47137 * 175.00268 * 7 5 4 34 34 H 1.09001 * 109.46570 * 300.00232 * 8 7 5 35 35 H 1.08997 * 109.47225 * 59.99766 * 8 7 5 36 36 H 1.08994 * 109.46959 * 305.00272 * 9 8 7 37 37 H 1.09000 * 109.47352 * 60.00347 * 10 9 8 38 38 H 1.08997 * 109.46916 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.47258 * 300.00163 * 10 9 8 40 40 H 1.08993 * 109.47169 * 59.99855 * 11 9 8 41 41 H 1.09006 * 109.47236 * 180.02562 * 11 9 8 42 42 H 1.09008 * 109.47439 * 300.00013 * 11 9 8 43 43 H 1.09002 * 109.88241 * 298.32048 * 15 14 12 44 44 H 1.09000 * 109.88049 * 59.33177 * 15 14 12 45 45 H 1.09000 * 110.72188 * 96.24097 * 16 15 14 46 46 H 1.09002 * 110.72265 * 219.52294 * 16 15 14 47 47 H 0.96698 * 114.00346 * 292.23261 * 18 17 16 48 48 H 0.96993 * 120.00181 * 179.97438 * 22 21 19 49 49 H 1.08999 * 110.36956 * 323.01018 * 27 14 12 50 50 H 1.09001 * 110.36709 * 85.22211 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0092 -2.1950 0.0000 7 6 4.1563 -0.4453 -1.2487 8 6 3.7520 -1.2347 -2.4954 9 6 4.2618 -0.5125 -3.7440 10 6 5.7919 -0.5120 -3.7438 11 6 3.7522 -1.2330 -4.9938 12 6 4.1478 -0.4576 1.2310 13 8 3.4193 0.3035 1.8316 14 7 5.4064 -0.6687 1.6645 15 6 6.3913 -1.5603 1.0348 16 6 7.6948 -1.4609 1.8550 17 6 7.5473 -0.0901 2.5723 18 8 7.9454 0.9800 1.7131 19 6 8.3304 -0.0652 3.8597 20 1 7.8122 -0.0201 4.8061 21 6 9.7083 -0.1002 3.8291 22 7 10.3394 -0.1547 2.6765 23 14 10.6791 -0.0700 5.4248 24 1 10.3086 -1.2465 6.2518 25 1 12.1320 -0.1154 5.1213 26 1 10.3682 1.1764 6.1698 27 6 6.0237 -0.0431 2.8481 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6958 -2.0073 -0.0005 32 1 3.7218 0.5533 -1.2942 33 1 5.2426 -0.3671 -1.2046 34 1 4.1865 -2.2333 -2.4498 35 1 2.6657 -1.3129 -2.5394 36 1 3.8982 0.5150 -3.7433 37 1 6.1556 -1.5395 -3.7445 38 1 6.1551 0.0030 -4.6332 39 1 6.1549 0.0014 -2.8534 40 1 2.6623 -1.2334 -4.9939 41 1 4.1159 -0.7187 -5.8834 42 1 4.1159 -2.2606 -4.9945 43 1 6.0234 -2.5862 1.0464 44 1 6.5745 -1.2438 0.0080 45 1 7.7560 -2.2711 2.5816 46 1 8.5648 -1.4636 1.1984 47 1 8.8911 0.9920 1.5120 48 1 11.3088 -0.1789 2.6550 49 1 5.6883 0.9889 2.9502 50 1 5.7817 -0.6105 3.7468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597802358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:36 Heat of formation + Delta-G solvation = -137.836310 kcal Electronic energy + Delta-G solvation = -29931.922564 eV Core-core repulsion = 25958.520893 eV Total energy + Delta-G solvation = -3973.401671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36190 -38.71726 -37.11293 -36.85310 -34.53912 -34.24467 -32.13028 -31.73197 -29.76154 -29.31788 -28.37517 -27.22408 -26.58708 -24.77530 -22.73374 -22.04996 -20.67070 -19.88734 -19.64553 -18.58824 -17.47562 -17.13231 -16.43803 -15.88981 -15.31416 -15.11915 -14.96982 -14.83209 -14.55374 -14.20513 -14.12463 -13.71420 -13.47634 -13.35469 -12.97614 -12.85702 -12.51047 -12.31967 -12.24925 -12.19885 -12.02311 -11.83004 -11.67932 -11.55377 -11.31591 -11.27615 -11.18412 -10.86869 -10.72883 -10.66108 -10.63033 -10.51702 -10.49212 -10.03045 -9.73591 -9.42054 -9.37070 -8.70783 -8.60068 -8.19020 -7.89142 -6.29706 -4.37384 2.86288 3.12117 3.21251 3.25745 3.26315 3.30872 3.75095 4.26203 4.64260 4.78994 4.82541 4.86706 4.96347 5.04864 5.06507 5.17511 5.27500 5.36384 5.40753 5.52199 5.56001 5.61671 5.63873 5.72464 5.76463 5.78959 5.82485 5.84225 5.88701 5.99206 6.08050 6.12963 6.20915 6.26696 6.34703 6.46779 6.47468 6.55777 6.70742 6.89578 7.01509 7.29890 7.33462 7.61713 7.73693 8.00611 8.21422 8.48224 8.64190 8.79536 9.31700 9.50249 10.77880 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.003567 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.935048 B = 7847.959161 C = 9225.423042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.512 3.488 3 O -0.510 6.510 4 N -0.723 5.723 5 C 0.140 3.860 6 H 0.101 0.899 7 C -0.134 4.134 8 C -0.105 4.105 9 C -0.097 4.097 10 C -0.151 4.151 11 C -0.145 4.145 12 C 0.512 3.488 13 O -0.526 6.526 14 N -0.608 5.608 15 C 0.099 3.901 16 C -0.138 4.138 17 C 0.250 3.750 18 O -0.583 6.583 19 C -0.536 4.536 20 H 0.064 0.936 21 C 0.073 3.927 22 N -0.898 5.898 23 Si 0.904 3.096 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.122 3.878 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.399 0.601 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.385 0.615 48 H 0.270 0.730 49 H 0.069 0.931 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.298 -8.124 -12.195 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.299 3.701 3 O -0.383 6.383 4 N -0.377 5.377 5 C 0.031 3.969 6 H 0.119 0.881 7 C -0.172 4.172 8 C -0.143 4.143 9 C -0.116 4.116 10 C -0.208 4.208 11 C -0.202 4.202 12 C 0.298 3.702 13 O -0.402 6.402 14 N -0.342 5.342 15 C -0.024 4.024 16 C -0.177 4.177 17 C 0.209 3.791 18 O -0.393 6.393 19 C -0.574 4.574 20 H 0.082 0.918 21 C -0.129 4.129 22 N -0.538 5.538 23 Si 0.731 3.269 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.200 1.200 27 C 0.000 4.000 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.233 0.767 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.101 0.899 47 H 0.237 0.763 48 H 0.080 0.920 49 H 0.087 0.913 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.795 -6.775 -11.952 19.469 hybrid contribution 1.094 -0.778 0.856 1.592 sum -12.701 -7.554 -11.096 18.480 Atomic orbital electron populations 1.21850 0.92399 1.04139 1.04501 1.20581 0.90087 0.83721 0.75741 1.90741 1.70081 1.31127 1.46354 1.45719 1.05581 1.08889 1.77472 1.20822 0.81289 1.00539 0.94238 0.88067 1.21997 1.02140 1.01419 0.91674 1.21577 1.00603 0.98667 0.93453 1.21104 0.96182 0.99842 0.94470 1.21906 0.94999 1.01850 1.02060 1.21828 1.00614 1.00387 0.97400 1.20348 0.81064 0.82968 0.85857 1.90698 1.55455 1.36242 1.57790 1.48569 1.11378 1.45060 1.29186 1.22176 0.90785 0.91949 0.97513 1.23230 0.94047 1.01470 0.98957 1.19611 0.87989 0.83071 0.88410 1.86117 1.31364 1.51997 1.69832 1.21459 0.91514 1.51799 0.92632 0.91752 1.24983 0.97590 0.93421 0.96951 1.69553 1.09344 1.50321 1.24554 0.86462 0.78502 0.78891 0.83049 1.20060 1.21096 1.19985 1.22332 0.93662 0.97798 0.86210 0.89156 0.89275 0.90730 0.76673 0.89083 0.90123 0.92110 0.92134 0.91297 0.92700 0.92985 0.91967 0.93007 0.92891 0.92804 0.93147 0.92357 0.91450 0.89912 0.76343 0.92034 0.91262 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.30 36.01 0.37 -1.19 16 2 C 0.51 7.28 6.69 -10.98 -0.07 7.20 16 3 O -0.51 -10.04 12.96 -17.93 -0.23 -10.27 16 4 N -0.72 -8.56 4.65 -54.93 -0.26 -8.82 16 5 C 0.14 1.96 2.43 -69.08 -0.17 1.79 16 6 H 0.10 1.14 7.52 -51.92 -0.39 0.75 16 7 C -0.13 -1.85 4.28 -26.73 -0.11 -1.96 16 8 C -0.11 -1.09 4.57 -26.73 -0.12 -1.21 16 9 C -0.10 -0.99 2.92 -90.62 -0.26 -1.26 16 10 C -0.15 -1.59 8.95 37.16 0.33 -1.26 16 11 C -0.14 -1.21 9.19 37.16 0.34 -0.87 16 12 C 0.51 10.00 6.84 -10.99 -0.08 9.92 16 13 O -0.53 -12.32 13.94 -17.92 -0.25 -12.57 16 14 N -0.61 -12.19 3.33 -170.52 -0.57 -12.76 16 15 C 0.10 1.74 6.17 -3.07 -0.02 1.72 16 16 C -0.14 -2.91 5.66 -24.76 -0.14 -3.05 16 17 C 0.25 6.07 0.89 -89.49 -0.08 5.99 16 18 O -0.58 -15.20 13.18 -35.23 -0.46 -15.66 16 19 C -0.54 -13.98 8.26 -34.44 -0.28 -14.27 16 20 H 0.06 1.67 7.77 -52.49 -0.41 1.27 16 21 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 22 N -0.90 -23.01 10.79 55.43 0.60 -22.41 16 23 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 C 0.12 2.80 6.08 -2.53 -0.02 2.79 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.40 3.10 8.83 -40.82 -0.36 2.74 16 32 H 0.09 1.55 6.04 -51.93 -0.31 1.24 16 33 H 0.08 1.19 5.03 -51.93 -0.26 0.93 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.59 7.75 -51.93 -0.40 0.19 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.75 6.57 -51.93 -0.34 0.41 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.05 0.74 7.94 -51.93 -0.41 0.32 16 44 H 0.06 0.97 6.68 -51.93 -0.35 0.63 16 45 H 0.07 1.41 8.03 -51.93 -0.42 1.00 16 46 H 0.08 1.82 7.86 -51.93 -0.41 1.41 16 47 H 0.38 10.06 6.93 45.56 0.32 10.37 16 48 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 49 H 0.07 1.75 8.04 -51.93 -0.42 1.33 16 50 H 0.07 1.51 8.02 -51.93 -0.42 1.09 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -32.63 390.96 -8.65 -41.28 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -7.94 Total: 14.05 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -0.41 Total: 6.13 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.22 Total: -43.99 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.95 Total: -38.50 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.63 -8.65 -41.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597802358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.556 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds