Wall clock time and date at job start Tue Mar 31 2020 05:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21279 * 119.99910 * 2 1 4 4 N 1.34779 * 119.99725 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99625 * 180.02562 * 4 2 1 6 6 H 1.09008 * 109.46745 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46884 * 299.99118 * 5 4 2 8 8 C 1.53002 * 109.47372 * 295.00555 * 7 5 4 9 9 C 1.52996 * 109.47154 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46994 * 64.99875 * 9 8 7 11 11 C 1.52996 * 109.47142 * 184.99869 * 9 8 7 12 12 C 1.50694 * 109.47518 * 59.99445 * 5 4 2 13 13 O 1.21275 * 119.99961 * 340.00105 * 12 5 4 14 14 N 1.34777 * 119.99872 * 159.99721 * 12 5 4 15 15 C 1.47018 * 125.64981 * 0.02817 * 14 12 5 16 16 C 1.54325 * 107.40412 * 178.82520 * 15 14 12 17 17 C 1.55405 * 102.82616 * 337.97548 * 16 15 14 18 18 O 1.42894 * 110.89418 * 277.26698 * 17 16 15 19 19 C 1.50704 * 111.07313 * 153.48318 * 17 16 15 20 20 H 1.07997 * 120.00130 * 247.66801 * 19 17 16 21 21 C 1.37876 * 119.99522 * 67.66152 * 19 17 16 22 22 N 1.31520 * 120.00267 * 0.02562 * 21 19 17 23 23 Si 1.86805 * 120.00088 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46770 * 60.00138 * 23 21 19 25 25 H 1.48494 * 109.47223 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46900 * 300.00321 * 23 21 19 27 27 C 1.47426 * 125.64500 * 179.97438 * 14 12 5 28 28 H 1.08996 * 109.46874 * 269.99543 * 1 2 3 29 29 H 1.09000 * 109.47052 * 29.99835 * 1 2 3 30 30 H 1.08999 * 109.47123 * 149.99509 * 1 2 3 31 31 H 0.97005 * 119.99890 * 359.97438 * 4 2 1 32 32 H 1.09002 * 109.47006 * 55.00515 * 7 5 4 33 33 H 1.08997 * 109.47137 * 175.00268 * 7 5 4 34 34 H 1.09001 * 109.46570 * 300.00232 * 8 7 5 35 35 H 1.08997 * 109.47225 * 59.99766 * 8 7 5 36 36 H 1.08994 * 109.46959 * 305.00272 * 9 8 7 37 37 H 1.09000 * 109.47352 * 60.00347 * 10 9 8 38 38 H 1.08997 * 109.46916 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.47258 * 300.00163 * 10 9 8 40 40 H 1.08993 * 109.47169 * 59.99855 * 11 9 8 41 41 H 1.09006 * 109.47236 * 180.02562 * 11 9 8 42 42 H 1.09008 * 109.47439 * 300.00013 * 11 9 8 43 43 H 1.09002 * 109.88241 * 298.32048 * 15 14 12 44 44 H 1.09000 * 109.88049 * 59.33177 * 15 14 12 45 45 H 1.09000 * 110.72188 * 96.24097 * 16 15 14 46 46 H 1.09002 * 110.72265 * 219.52294 * 16 15 14 47 47 H 0.96698 * 114.00346 * 292.23261 * 18 17 16 48 48 H 0.96993 * 120.00181 * 179.97438 * 22 21 19 49 49 H 1.08999 * 110.36956 * 323.01018 * 27 14 12 50 50 H 1.09001 * 110.36709 * 85.22211 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0092 -2.1950 0.0000 7 6 4.1563 -0.4453 -1.2487 8 6 3.7520 -1.2347 -2.4954 9 6 4.2618 -0.5125 -3.7440 10 6 5.7919 -0.5120 -3.7438 11 6 3.7522 -1.2330 -4.9938 12 6 4.1478 -0.4576 1.2310 13 8 3.4193 0.3035 1.8316 14 7 5.4064 -0.6687 1.6645 15 6 6.3913 -1.5603 1.0348 16 6 7.6948 -1.4609 1.8550 17 6 7.5473 -0.0901 2.5723 18 8 7.9454 0.9800 1.7131 19 6 8.3304 -0.0652 3.8597 20 1 7.8122 -0.0201 4.8061 21 6 9.7083 -0.1002 3.8291 22 7 10.3394 -0.1547 2.6765 23 14 10.6791 -0.0700 5.4248 24 1 10.3086 -1.2465 6.2518 25 1 12.1320 -0.1154 5.1213 26 1 10.3682 1.1764 6.1698 27 6 6.0237 -0.0431 2.8481 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6958 -2.0073 -0.0005 32 1 3.7218 0.5533 -1.2942 33 1 5.2426 -0.3671 -1.2046 34 1 4.1865 -2.2333 -2.4498 35 1 2.6657 -1.3129 -2.5394 36 1 3.8982 0.5150 -3.7433 37 1 6.1556 -1.5395 -3.7445 38 1 6.1551 0.0030 -4.6332 39 1 6.1549 0.0014 -2.8534 40 1 2.6623 -1.2334 -4.9939 41 1 4.1159 -0.7187 -5.8834 42 1 4.1159 -2.2606 -4.9945 43 1 6.0234 -2.5862 1.0464 44 1 6.5745 -1.2438 0.0080 45 1 7.7560 -2.2711 2.5816 46 1 8.5648 -1.4636 1.1984 47 1 8.8911 0.9920 1.5120 48 1 11.3088 -0.1789 2.6550 49 1 5.6883 0.9889 2.9502 50 1 5.7817 -0.6105 3.7468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597802358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:35 Heat of formation + Delta-G solvation = -160.954806 kcal Electronic energy + Delta-G solvation = -29932.925057 eV Core-core repulsion = 25958.520893 eV Total energy + Delta-G solvation = -3974.404164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67698 -40.18905 -38.67747 -37.89873 -36.08182 -35.66180 -34.14725 -32.81783 -31.42817 -30.15806 -30.07032 -27.97778 -27.94617 -26.41237 -24.11247 -23.26465 -21.93752 -21.42732 -20.73067 -20.06210 -19.16217 -18.51819 -17.81114 -17.14125 -16.95676 -16.62610 -16.32793 -16.05732 -15.93348 -15.63434 -15.32233 -14.97233 -14.71347 -14.60106 -14.44633 -13.93106 -13.86770 -13.62034 -13.52334 -13.23652 -13.19417 -13.08789 -13.04562 -12.93830 -12.81974 -12.61187 -12.51703 -12.48142 -12.28373 -12.14922 -11.85984 -11.63146 -11.46834 -11.42591 -11.30417 -11.07406 -10.65321 -10.55179 -10.16679 -9.90336 -9.51621 -8.25769 -6.40659 1.42337 1.44725 1.51541 1.62785 1.75285 2.10931 2.38370 2.47776 2.98804 3.49383 3.76906 3.83065 3.88797 4.01632 4.05203 4.07225 4.15568 4.31960 4.34517 4.35698 4.48727 4.55627 4.59924 4.66751 4.69455 4.70839 4.83342 4.85788 4.88223 4.93483 5.02435 5.08284 5.09891 5.16618 5.21026 5.28295 5.29677 5.39893 5.44180 5.48203 5.52602 5.53672 5.57952 5.76543 6.05547 6.61053 6.67866 6.71023 7.21625 7.30700 7.45444 7.53309 8.80371 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.003567 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.935048 B = 7847.959161 C = 9225.423042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.501 3.499 3 O -0.574 6.574 4 N -0.706 5.706 5 C 0.148 3.852 6 H 0.144 0.856 7 C -0.125 4.125 8 C -0.094 4.094 9 C -0.099 4.099 10 C -0.150 4.150 11 C -0.139 4.139 12 C 0.501 3.499 13 O -0.572 6.572 14 N -0.611 5.611 15 C 0.104 3.896 16 C -0.128 4.128 17 C 0.235 3.765 18 O -0.598 6.598 19 C -0.565 4.565 20 H 0.054 0.946 21 C 0.037 3.963 22 N -0.908 5.908 23 Si 0.961 3.039 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.281 1.281 27 C 0.127 3.873 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.424 0.576 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.038 0.962 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.381 0.619 48 H 0.273 0.727 49 H 0.031 0.969 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.251 -11.431 -13.554 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.289 3.711 3 O -0.452 6.452 4 N -0.362 5.362 5 C 0.039 3.961 6 H 0.162 0.838 7 C -0.164 4.164 8 C -0.132 4.132 9 C -0.117 4.117 10 C -0.208 4.208 11 C -0.197 4.197 12 C 0.289 3.711 13 O -0.451 6.451 14 N -0.344 5.344 15 C -0.017 4.017 16 C -0.166 4.166 17 C 0.194 3.806 18 O -0.408 6.408 19 C -0.603 4.603 20 H 0.072 0.928 21 C -0.164 4.164 22 N -0.548 5.548 23 Si 0.786 3.214 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.207 1.207 27 C 0.004 3.996 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.136 0.864 31 H 0.262 0.738 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.232 0.768 48 H 0.083 0.917 49 H 0.050 0.950 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.774 -10.156 -13.338 22.345 hybrid contribution 1.404 0.332 1.301 1.943 sum -13.369 -9.824 -12.037 20.497 Atomic orbital electron populations 1.21850 0.88401 1.06259 1.05389 1.21550 0.92122 0.83221 0.74164 1.90729 1.71744 1.33521 1.49229 1.45621 1.04734 1.09652 1.76154 1.20845 0.82583 1.01686 0.90971 0.83847 1.21882 1.00929 1.00151 0.93427 1.21528 1.01417 0.98994 0.91238 1.21100 0.95830 0.99133 0.95681 1.21900 0.95424 1.02375 1.01063 1.21774 1.01058 1.00695 0.96137 1.21506 0.80242 0.82507 0.86836 1.90675 1.56642 1.38291 1.59504 1.48672 1.12152 1.45209 1.28417 1.22263 0.88595 0.93887 0.96981 1.23006 0.95653 0.99144 0.98816 1.19828 0.88254 0.84278 0.88199 1.86109 1.31020 1.53380 1.70268 1.21683 0.92429 1.53126 0.93035 0.92757 1.25605 0.98119 0.92895 0.99753 1.69612 1.09629 1.49848 1.25701 0.85569 0.77468 0.78601 0.79715 1.19308 1.20247 1.20688 1.22074 0.93411 0.96114 0.88041 0.88672 0.89414 0.86425 0.73784 0.93006 0.91512 0.89580 0.91006 0.93400 0.91324 0.92685 0.94331 0.92266 0.92737 0.91566 0.88449 0.91125 0.91379 0.90950 0.76796 0.91737 0.94997 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.30 71.24 0.73 -1.85 16 2 C 0.50 13.81 6.69 87.66 0.59 14.40 16 3 O -0.57 -23.50 12.96 19.43 0.25 -23.25 16 4 N -0.71 -15.00 4.65 -446.08 -2.07 -17.07 16 5 C 0.15 3.85 2.43 44.24 0.11 3.95 16 6 H 0.14 2.53 7.52 -2.38 -0.02 2.51 16 7 C -0.13 -3.35 4.28 30.60 0.13 -3.22 16 8 C -0.09 -1.68 4.57 30.59 0.14 -1.54 16 9 C -0.10 -1.85 2.92 -10.80 -0.03 -1.89 16 10 C -0.15 -3.00 8.95 71.98 0.64 -2.35 16 11 C -0.14 -1.93 9.19 71.98 0.66 -1.27 16 12 C 0.50 19.57 6.84 87.66 0.60 20.17 16 13 O -0.57 -27.76 13.94 19.44 0.27 -27.49 16 14 N -0.61 -24.47 3.33 -811.81 -2.70 -27.17 16 15 C 0.10 3.48 6.17 86.73 0.54 4.01 16 16 C -0.13 -5.30 5.66 31.87 0.18 -5.12 16 17 C 0.23 11.70 0.89 -10.06 -0.01 11.69 16 18 O -0.60 -32.38 13.18 -148.98 -1.96 -34.34 16 19 C -0.56 -30.16 8.26 25.60 0.21 -29.95 16 20 H 0.05 2.92 7.77 -2.91 -0.02 2.90 16 21 C 0.04 1.92 5.30 84.65 0.45 2.37 16 22 N -0.91 -46.69 10.79 21.45 0.23 -46.46 16 23 Si 0.96 41.37 29.54 68.60 2.03 43.40 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 C 0.13 6.07 6.08 86.85 0.53 6.59 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.42 4.79 8.83 -92.70 -0.82 3.97 16 32 H 0.05 1.83 6.04 -2.39 -0.01 1.82 16 33 H 0.07 1.96 5.03 -2.39 -0.01 1.94 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.14 7.75 -2.39 -0.02 1.12 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.04 0.94 6.57 -2.39 -0.02 0.92 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.10 2.39 7.94 -2.39 -0.02 2.38 16 44 H 0.07 2.21 6.68 -2.39 -0.02 2.19 16 45 H 0.07 2.79 8.03 -2.39 -0.02 2.77 16 46 H 0.07 3.15 7.86 -2.39 -0.02 3.13 16 47 H 0.38 20.62 6.93 -74.06 -0.51 20.11 16 48 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 49 H 0.03 1.72 8.04 -2.39 -0.02 1.70 16 50 H 0.07 3.28 8.02 -2.39 -0.02 3.26 16 Total: -1.00 -76.80 390.96 1.12 -75.68 By element: Atomic # 1 Polarization: 41.10 SS G_CDS: -0.39 Total: 40.71 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 5.47 Total: 16.00 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -4.54 Total: -90.70 kcal Atomic # 8 Polarization: -83.64 SS G_CDS: -1.44 Total: -85.08 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -76.80 1.12 -75.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597802358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.276 kcal (2) G-P(sol) polarization free energy of solvation -76.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds