Wall clock time and date at job start Tue Mar 31 2020 05:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99411 * 2 1 4 4 H 1.48504 * 109.47050 * 269.99426 * 3 2 1 5 5 H 1.48496 * 109.47240 * 29.99562 * 3 2 1 6 6 H 1.48496 * 109.46967 * 150.00101 * 3 2 1 7 7 C 1.37867 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00151 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.46892 * 110.99883 * 170.00120 * 10 9 7 12 12 C 1.53239 * 109.33972 * 187.25128 * 11 10 9 13 13 N 1.47072 * 108.52357 * 306.17052 * 12 11 10 14 14 C 1.34777 * 120.88223 * 231.18882 * 13 12 11 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46925 * 179.97438 * 16 14 13 18 18 O 1.42895 * 109.47074 * 180.02562 * 17 16 14 19 19 C 1.42899 * 113.99773 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47258 * 180.02562 * 19 18 17 21 21 H 1.09004 * 109.82194 * 305.56441 * 20 19 18 22 22 C 1.54384 * 109.83553 * 184.58926 * 20 19 18 23 23 C 1.55304 * 102.25096 * 219.12649 * 22 20 19 24 24 C 1.54948 * 100.94417 * 34.13253 * 23 22 20 25 25 O 1.43234 * 109.83275 * 66.44932 * 20 19 18 26 26 C 1.47082 * 118.23515 * 51.45456 * 13 12 11 27 27 C 1.46899 * 110.99812 * 294.30377 * 10 9 7 28 28 H 0.96996 * 120.00820 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46936 * 60.00025 * 9 7 2 30 30 H 1.09001 * 109.46877 * 300.00054 * 9 7 2 31 31 H 1.09000 * 109.49315 * 67.29155 * 11 10 9 32 32 H 1.09003 * 109.51396 * 307.22718 * 11 10 9 33 33 H 1.09005 * 109.62768 * 186.45978 * 12 11 10 34 34 H 1.08998 * 109.62471 * 65.88485 * 12 11 10 35 35 H 1.09000 * 109.47318 * 299.99141 * 16 14 13 36 36 H 1.09000 * 109.47161 * 59.99772 * 16 14 13 37 37 H 1.09004 * 109.46930 * 299.99901 * 17 16 14 38 38 H 1.09004 * 109.47059 * 59.99503 * 17 16 14 39 39 H 1.09005 * 109.47016 * 299.99483 * 19 18 17 40 40 H 1.08997 * 109.47442 * 59.99961 * 19 18 17 41 41 H 1.09004 * 110.84259 * 337.31622 * 22 20 19 42 42 H 1.08999 * 110.85108 * 100.93621 * 22 20 19 43 43 H 1.08995 * 111.12566 * 276.20889 * 23 22 20 44 44 H 1.09003 * 111.15972 * 152.06403 * 23 22 20 45 45 H 1.08998 * 110.30914 * 204.64005 * 24 23 22 46 46 H 1.08997 * 110.39746 * 82.51051 * 24 23 22 47 47 H 1.09001 * 109.62941 * 68.25669 * 26 13 12 48 48 H 1.09006 * 109.62639 * 188.83570 * 26 13 12 49 49 H 1.08999 * 109.49200 * 292.70547 * 27 10 9 50 50 H 1.08995 * 109.49689 * 52.75987 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2059 -3.6156 0.0018 11 6 1.5213 -4.8933 0.2399 12 6 2.5639 -6.0029 0.4140 13 7 3.4625 -5.9864 -0.7501 14 6 3.7134 -7.1128 -1.4464 15 8 3.1958 -8.1584 -1.1152 16 6 4.6372 -7.0730 -2.6364 17 6 4.7499 -8.4737 -3.2416 18 8 5.6263 -8.4361 -4.3697 19 6 5.8020 -9.7007 -5.0114 20 6 6.7547 -9.5424 -6.1982 21 1 6.3898 -8.7595 -6.8631 22 6 6.8607 -10.8772 -6.9665 23 6 8.3687 -10.9267 -7.3346 24 6 8.9965 -10.2385 -6.0964 25 8 8.0657 -9.2084 -5.7277 26 6 4.0849 -4.7092 -1.1307 27 6 2.9779 -3.6495 -1.2475 28 1 -0.4851 0.8399 -0.0004 29 1 0.6249 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8903 31 1 0.8804 -5.1266 -0.6103 32 1 0.9151 -4.8189 1.1428 33 1 2.0632 -6.9691 0.4764 34 1 3.1387 -5.8258 1.3230 35 1 4.2390 -6.3855 -3.3827 36 1 5.6235 -6.7340 -2.3196 37 1 5.1483 -9.1610 -2.4952 38 1 3.7636 -8.8131 -3.5583 39 1 6.2221 -10.4132 -4.3014 40 1 4.8379 -10.0658 -5.3652 41 1 6.5901 -11.7163 -6.3255 42 1 6.2427 -10.8583 -7.8642 43 1 8.5700 -10.3597 -8.2435 44 1 8.7166 -11.9552 -7.4310 45 1 9.9612 -9.8019 -6.3548 46 1 9.1115 -10.9536 -5.2819 47 1 4.8033 -4.4102 -0.3674 48 1 4.5905 -4.8198 -2.0901 49 1 2.3167 -3.9000 -2.0770 50 1 3.4281 -2.6725 -1.4235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602206478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:39 Heat of formation + Delta-G solvation = -122.922790 kcal Electronic energy + Delta-G solvation = -27622.749615 eV Core-core repulsion = 23649.994644 eV Total energy + Delta-G solvation = -3972.754972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.11622 -39.89478 -37.96728 -37.35222 -34.41704 -32.75461 -32.54856 -32.17754 -30.92723 -30.12556 -28.21704 -26.01063 -25.45306 -23.86442 -23.08582 -22.18158 -21.88192 -21.48288 -20.41313 -18.58114 -17.61931 -17.34898 -16.48796 -16.39347 -16.32043 -16.19439 -15.45120 -15.27875 -15.01908 -14.74882 -14.43480 -14.23975 -13.97653 -13.78967 -13.60960 -13.35138 -13.24271 -12.92447 -12.53759 -12.30404 -12.20379 -11.93084 -11.75464 -11.71408 -11.46953 -11.38910 -11.29567 -11.27536 -11.05520 -10.94605 -10.75797 -10.62795 -10.54205 -9.91128 -9.86077 -9.79802 -9.68295 -9.28667 -8.52578 -8.44259 -7.34206 -6.07099 -4.09317 2.68188 2.88301 3.29119 3.35855 3.36523 3.39676 3.60126 3.99171 4.33817 4.38166 4.42911 4.62961 4.69343 4.73750 4.78808 4.86542 4.93130 4.99846 5.11839 5.14845 5.20317 5.25875 5.28658 5.29360 5.35408 5.37766 5.42535 5.48979 5.53592 5.64697 5.65320 5.67702 5.73246 5.77873 5.87957 6.02837 6.27234 6.43985 6.46374 6.64917 6.66700 6.99043 7.20680 7.26540 7.52433 7.73228 8.00160 8.10729 8.22113 8.46081 8.97844 9.55363 11.03638 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.001937 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.306594 B =14453.390377 C =15474.739668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.041 3.959 12 C 0.118 3.882 13 N -0.606 5.606 14 C 0.519 3.481 15 O -0.556 6.556 16 C -0.138 4.138 17 C 0.080 3.920 18 O -0.381 6.381 19 C 0.055 3.945 20 C 0.082 3.918 21 H 0.090 0.910 22 C -0.150 4.150 23 C -0.156 4.156 24 C 0.046 3.954 25 O -0.367 6.367 26 C 0.107 3.893 27 C 0.050 3.950 28 H 0.262 0.738 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.026 0.974 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.059 0.941 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.025 0.975 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.352 -21.829 -12.749 29.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.261 5.261 11 C -0.088 4.088 12 C -0.005 4.005 13 N -0.339 5.339 14 C 0.307 3.693 15 O -0.435 6.435 16 C -0.178 4.178 17 C 0.003 3.997 18 O -0.300 6.300 19 C -0.022 4.022 20 C 0.025 3.975 21 H 0.107 0.893 22 C -0.187 4.187 23 C -0.194 4.194 24 C -0.031 4.031 25 O -0.286 6.286 26 C -0.016 4.016 27 C -0.080 4.080 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.077 0.923 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.044 0.956 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.376 -21.811 -12.117 28.796 hybrid contribution -0.465 0.528 -0.651 0.959 sum 13.910 -21.283 -12.768 28.451 Atomic orbital electron populations 1.69956 1.06096 1.26873 1.50753 1.24998 0.94869 0.99380 0.95352 0.86490 0.79802 0.83037 0.78041 1.20721 1.21268 1.19734 1.21134 0.93474 0.89847 1.50383 0.91770 1.19737 0.90012 0.87179 0.96250 1.62078 1.28035 1.02710 1.33259 1.22403 0.94943 0.90556 1.00930 1.21763 0.91713 0.99493 0.87496 1.48223 1.46635 1.08660 1.30377 1.20340 0.81818 0.83306 0.83839 1.90665 1.52791 1.30208 1.69831 1.21478 1.01011 0.98781 0.96542 1.22113 0.93546 0.96289 0.87783 1.87865 1.67231 1.30194 1.44753 1.22898 0.98163 0.86507 0.94640 1.22779 0.83903 0.97018 0.93838 0.89254 1.23120 0.97399 0.97238 1.00971 1.23272 0.94760 1.02118 0.99218 1.23423 0.93709 0.90516 0.95457 1.88563 1.17010 1.44093 1.78946 1.22169 0.96214 0.82484 1.00755 1.22418 0.95063 0.99078 0.91394 0.92867 0.99088 0.95001 0.95567 0.90041 0.89425 0.90881 0.87964 0.87947 0.92567 0.92577 0.92902 0.92266 0.90160 0.89476 0.90136 0.89757 0.89616 0.92255 0.90387 0.89897 0.95635 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.51 -13.83 8.41 -34.44 -0.29 -14.12 16 8 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 9 C 0.19 4.89 4.72 -4.97 -0.02 4.87 16 10 N -0.54 -11.07 4.62 -235.47 -1.09 -12.16 16 11 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 12 C 0.12 1.84 6.60 -3.61 -0.02 1.82 16 13 N -0.61 -9.14 3.00 -172.18 -0.52 -9.66 16 14 C 0.52 7.69 7.71 -10.98 -0.08 7.61 16 15 O -0.56 -9.77 15.43 5.56 0.09 -9.68 16 16 C -0.14 -1.63 4.43 -27.88 -0.12 -1.75 16 17 C 0.08 0.94 5.23 37.16 0.19 1.13 16 18 O -0.38 -4.57 10.33 -37.80 -0.39 -4.96 16 19 C 0.06 0.50 5.47 37.16 0.20 0.71 16 20 C 0.08 0.69 3.81 -26.01 -0.10 0.59 16 21 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 22 C -0.15 -0.79 6.54 -24.78 -0.16 -0.95 16 23 C -0.16 -0.74 7.16 -24.48 -0.18 -0.92 16 24 C 0.05 0.31 7.78 38.19 0.30 0.60 16 25 O -0.37 -3.85 11.00 -37.80 -0.42 -4.26 16 26 C 0.11 1.51 6.53 -3.36 -0.02 1.49 16 27 C 0.05 0.90 5.47 -3.46 -0.02 0.88 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H -0.01 -0.24 8.13 -51.93 -0.42 -0.66 16 30 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 33 H 0.09 1.36 7.06 -51.93 -0.37 0.99 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.10 1.12 7.67 -51.93 -0.40 0.72 16 36 H 0.10 1.09 7.99 -51.93 -0.41 0.67 16 37 H 0.06 0.68 8.10 -51.93 -0.42 0.25 16 38 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.37 7.85 -51.93 -0.41 -0.04 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.08 0.94 6.02 -51.93 -0.31 0.63 16 49 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.10 1.87 6.67 -51.93 -0.35 1.52 16 LS Contribution 396.15 15.07 5.97 5.97 Total: -1.00 -32.76 396.15 -10.01 -42.77 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -8.92 Total: -2.74 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.45 Total: 4.11 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.87 Total: -47.33 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.72 Total: -18.90 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.76 -10.01 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.157 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds