Wall clock time and date at job start Tue Mar 31 2020 05:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00043 * 2 1 4 4 H 1.48509 * 109.47217 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47320 * 120.00017 * 3 2 1 6 6 H 1.48503 * 109.47515 * 240.00144 * 3 2 1 7 7 C 1.37871 * 119.99471 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99557 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00867 * 0.02562 * 7 2 1 10 10 N 1.46490 * 109.47629 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00207 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99935 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.99880 * 179.97438 * 11 10 9 14 14 N 1.46897 * 109.47067 * 179.97438 * 13 11 10 15 15 C 1.46902 * 111.00326 * 175.17907 * 14 13 11 16 16 H 1.09005 * 109.47101 * 329.32286 * 15 14 13 17 17 C 1.53006 * 109.47381 * 209.32854 * 15 14 13 18 18 H 1.09002 * 110.26897 * 301.52599 * 17 15 14 19 19 C 1.54941 * 110.31142 * 63.71922 * 17 15 14 20 20 C 1.55300 * 100.94160 * 155.36538 * 19 17 15 21 21 C 1.54387 * 102.25245 * 325.86689 * 20 19 17 22 22 O 1.43235 * 107.58717 * 21.35900 * 21 20 19 23 23 C 1.52993 * 109.47252 * 89.32422 * 15 14 13 24 24 C 1.53002 * 112.85213 * 59.13700 * 23 15 14 25 25 O 1.42897 * 109.47612 * 185.17089 * 24 23 15 26 26 C 1.53783 * 113.61528 * 287.93651 * 23 15 14 27 27 C 1.53950 * 87.02095 * 220.04875 * 26 23 15 28 28 C 1.53779 * 87.11493 * 25.36164 * 27 26 23 29 29 H 0.97001 * 120.00205 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46733 * 299.99755 * 9 7 2 31 31 H 1.08999 * 109.47089 * 59.99396 * 9 7 2 32 32 H 0.97003 * 120.00076 * 359.97438 * 10 9 7 33 33 H 1.08999 * 109.47154 * 299.99233 * 13 11 10 34 34 H 1.08999 * 109.47566 * 59.99756 * 13 11 10 35 35 H 1.00906 * 111.00227 * 51.22230 * 14 13 11 36 36 H 1.08997 * 111.13074 * 273.28503 * 19 17 15 37 37 H 1.09006 * 111.12623 * 37.44507 * 19 17 15 38 38 H 1.09009 * 110.84904 * 207.68406 * 20 19 17 39 39 H 1.08999 * 110.85214 * 84.05918 * 20 19 17 40 40 H 1.09006 * 109.82957 * 261.84603 * 21 20 19 41 41 H 1.08996 * 109.90341 * 140.91686 * 21 20 19 42 42 H 1.09007 * 109.46591 * 305.16841 * 24 23 15 43 43 H 1.09003 * 109.46902 * 65.16399 * 24 23 15 44 44 H 0.96690 * 114.00231 * 180.02562 * 25 24 23 45 45 H 1.08993 * 113.61538 * 334.57172 * 26 23 15 46 46 H 1.09008 * 113.61070 * 105.46792 * 26 23 15 47 47 H 1.09004 * 113.53916 * 270.81127 * 27 26 23 48 48 H 1.08998 * 113.74613 * 139.94888 * 27 26 23 49 49 H 1.08991 * 113.61886 * 220.08993 * 28 27 26 50 50 H 1.09006 * 113.68884 * 89.19339 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6964 -1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0015 11 6 1.7537 -4.8834 -0.0019 12 8 0.5613 -5.1050 -0.0019 13 6 2.7330 -6.0288 -0.0022 14 7 1.9985 -7.3009 -0.0020 15 6 2.9187 -8.4402 -0.1175 16 1 3.7939 -8.1432 -0.6954 17 6 2.2106 -9.5983 -0.8235 18 1 1.3173 -9.8883 -0.2703 19 6 1.8411 -9.1986 -2.2742 20 6 1.7701 -10.5926 -2.9550 21 6 2.8695 -11.3783 -2.2084 22 8 3.0994 -10.7187 -0.9579 23 6 3.3568 -8.8856 1.2790 24 6 2.1815 -9.3011 2.1661 25 8 2.6564 -9.5865 3.4833 26 6 4.3280 -7.9077 1.9611 27 6 5.0865 -9.1450 2.4747 28 6 4.5098 -9.9033 1.2676 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5575 0.8881 31 1 0.6247 -2.5563 -0.8919 32 1 3.1566 -3.4355 -0.0010 33 1 3.3595 -5.9708 -0.8922 34 1 3.3597 -5.9713 0.8878 35 1 1.3065 -7.3192 -0.7361 36 1 0.8752 -8.6948 -2.3091 37 1 2.6202 -8.5818 -2.7223 38 1 2.0009 -10.5176 -4.0178 39 1 0.7931 -11.0506 -2.8005 40 1 3.7862 -11.3827 -2.7982 41 1 2.5389 -12.4017 -2.0313 42 1 1.4548 -8.4897 2.2098 43 1 1.7086 -10.1905 1.7497 44 1 1.9637 -9.8575 4.1011 45 1 4.9030 -7.3030 1.2599 46 1 3.8679 -7.3165 2.7530 47 1 4.7227 -9.5111 3.4348 48 1 6.1709 -9.0383 2.4459 49 1 4.1963 -10.9209 1.5004 50 1 5.1337 -9.8462 0.3757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878873012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:28 Heat of formation + Delta-G solvation = -113.715452 kcal Electronic energy + Delta-G solvation = -29261.742342 eV Core-core repulsion = 25289.386630 eV Total energy + Delta-G solvation = -3972.355712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.68286 -39.01909 -38.73875 -35.97085 -35.19278 -34.12455 -32.36246 -32.28492 -30.95092 -28.19538 -27.74128 -25.96475 -25.48579 -24.58018 -22.94107 -22.18946 -21.85105 -20.48609 -19.70831 -18.46347 -17.63804 -17.38965 -16.85807 -16.36776 -15.83249 -15.58807 -15.44415 -15.08203 -14.80059 -14.68261 -14.48917 -14.35755 -14.01342 -13.55269 -13.33683 -13.07870 -12.87671 -12.48798 -12.36040 -12.22320 -12.02975 -11.93878 -11.91884 -11.76654 -11.63929 -11.40847 -11.30756 -11.06498 -11.00096 -10.86674 -10.33536 -10.28558 -10.21554 -9.93698 -9.74981 -9.56953 -9.42131 -9.02758 -8.73987 -8.43765 -7.88222 -6.17356 -4.24405 3.24687 3.28684 3.30168 3.32347 3.37869 3.93075 4.11629 4.21140 4.26524 4.32511 4.43882 4.58015 4.74128 4.78587 4.90400 4.91764 5.00143 5.07519 5.16511 5.18641 5.26964 5.35595 5.40440 5.45179 5.48761 5.53418 5.57990 5.60544 5.67946 5.71346 5.80653 5.82136 5.88013 5.92055 6.00316 6.15606 6.25993 6.45981 6.66466 6.74377 6.90771 7.29366 7.34392 7.43315 7.51088 7.66041 7.67184 7.96437 8.61905 8.77259 9.09423 9.42289 10.92809 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.002755 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.989629 B =10160.288972 C =11162.559815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.713 5.713 11 C 0.497 3.503 12 O -0.546 6.546 13 C 0.038 3.962 14 N -0.661 5.661 15 C 0.107 3.893 16 H 0.058 0.942 17 C 0.080 3.920 18 H 0.079 0.921 19 C -0.160 4.160 20 C -0.154 4.154 21 C 0.050 3.950 22 O -0.367 6.367 23 C -0.060 4.060 24 C 0.104 3.896 25 O -0.569 6.569 26 C -0.124 4.124 27 C -0.140 4.140 28 C -0.108 4.108 29 H 0.266 0.734 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.390 0.610 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.350 0.650 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.371 0.629 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.096 0.904 48 H 0.052 0.948 49 H 0.064 0.936 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.791 -23.750 -1.814 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.362 5.362 11 C 0.281 3.719 12 O -0.424 6.424 13 C -0.094 4.094 14 N -0.295 5.295 15 C -0.003 4.003 16 H 0.076 0.924 17 C 0.022 3.978 18 H 0.097 0.903 19 C -0.198 4.198 20 C -0.191 4.191 21 C -0.027 4.027 22 O -0.286 6.286 23 C -0.061 4.061 24 C 0.026 3.974 25 O -0.375 6.375 26 C -0.161 4.161 27 C -0.177 4.177 28 C -0.146 4.146 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.222 0.778 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.172 0.828 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.218 0.782 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.114 0.886 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.423 -23.689 -1.280 24.857 hybrid contribution 0.387 1.076 -1.024 1.535 sum 7.809 -22.612 -2.304 24.034 Atomic orbital electron populations 1.69966 1.06107 1.27420 1.48816 1.24949 0.94916 0.99444 0.94687 0.86475 0.79419 0.82311 0.78702 1.21063 1.20035 1.20084 1.21194 0.93229 0.90493 1.53327 0.91964 1.19078 0.88266 0.81901 0.97675 1.46445 1.11116 1.06119 1.72557 1.20345 0.89493 0.84288 0.77795 1.90655 1.16661 1.84714 1.50405 1.22020 0.95838 0.88983 1.02577 1.60152 1.15117 0.99896 1.54377 1.21585 0.94473 0.89499 0.94781 0.92395 1.23100 0.92842 0.86672 0.95166 0.90272 1.23395 1.03389 0.97701 0.95316 1.23088 0.99849 0.95436 1.00758 1.23116 0.98065 0.96247 0.85289 1.88475 1.59912 1.43122 1.37047 1.21656 0.93833 0.97480 0.93100 1.21771 0.94962 0.98692 0.81938 1.86479 1.38374 1.90890 1.21720 1.22884 0.97234 0.96287 0.99738 1.22959 0.98240 0.96942 0.99543 1.22722 0.96332 0.97839 0.97739 0.92388 0.95530 0.95643 0.77768 0.92859 0.88014 0.82841 0.89292 0.90348 0.90046 0.90435 0.91514 0.91555 0.91690 0.94199 0.78221 0.91085 0.91201 0.88561 0.92894 0.91745 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.25 6.63 5.43 -5.20 -0.03 6.60 16 10 N -0.71 -14.77 5.55 -61.48 -0.34 -15.11 16 11 C 0.50 9.62 7.86 -10.99 -0.09 9.53 16 12 O -0.55 -12.74 16.09 5.56 0.09 -12.65 16 13 C 0.04 0.53 5.83 -4.98 -0.03 0.50 16 14 N -0.66 -8.53 5.42 -107.99 -0.58 -9.11 16 15 C 0.11 1.16 1.45 -67.71 -0.10 1.06 16 16 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 17 C 0.08 0.78 2.71 -25.70 -0.07 0.72 16 18 H 0.08 0.81 6.99 -51.93 -0.36 0.45 16 19 C -0.16 -1.36 5.73 -24.49 -0.14 -1.51 16 20 C -0.15 -1.07 7.02 -24.78 -0.17 -1.24 16 21 C 0.05 0.38 7.79 37.88 0.30 0.68 16 22 O -0.37 -3.72 9.06 -35.23 -0.32 -4.04 16 23 C -0.06 -0.67 0.66 -153.69 -0.10 -0.77 16 24 C 0.10 1.17 6.00 37.16 0.22 1.40 16 25 O -0.57 -6.08 10.54 -35.23 -0.37 -6.45 16 26 C -0.12 -1.46 5.24 -25.83 -0.14 -1.59 16 27 C -0.14 -1.57 7.54 -25.83 -0.19 -1.76 16 28 C -0.11 -1.20 5.41 -25.92 -0.14 -1.34 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.39 6.92 8.32 -40.82 -0.34 6.58 16 33 H 0.05 0.64 7.93 -51.93 -0.41 0.23 16 34 H 0.10 1.34 5.86 -51.93 -0.30 1.03 16 35 H 0.35 4.67 6.54 -39.29 -0.26 4.42 16 36 H 0.09 0.76 7.65 -51.93 -0.40 0.36 16 37 H 0.08 0.68 8.05 -51.93 -0.42 0.26 16 38 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.83 7.68 -51.93 -0.40 0.44 16 43 H 0.04 0.43 7.11 -51.93 -0.37 0.06 16 44 H 0.37 2.53 9.12 45.56 0.42 2.94 16 45 H 0.07 0.79 7.49 -51.93 -0.39 0.40 16 46 H 0.07 0.92 8.09 -51.92 -0.42 0.50 16 47 H 0.10 1.16 6.18 -51.93 -0.32 0.84 16 48 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 50 H 0.07 0.82 7.96 -51.93 -0.41 0.41 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -32.41 387.82 -8.76 -41.17 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -7.70 Total: 10.97 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.10 Total: -1.09 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.19 Total: -49.55 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.60 Total: -23.14 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.41 -8.76 -41.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878873012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.542 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds