Wall clock time and date at job start Tue Mar 31 2020 05:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00043 * 2 1 4 4 H 1.48509 * 109.47217 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47320 * 120.00017 * 3 2 1 6 6 H 1.48503 * 109.47515 * 240.00144 * 3 2 1 7 7 C 1.37871 * 119.99471 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99557 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00867 * 0.02562 * 7 2 1 10 10 N 1.46490 * 109.47629 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00207 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99935 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.99880 * 179.97438 * 11 10 9 14 14 N 1.46897 * 109.47067 * 179.97438 * 13 11 10 15 15 C 1.46902 * 111.00326 * 175.17907 * 14 13 11 16 16 H 1.09005 * 109.47101 * 329.32286 * 15 14 13 17 17 C 1.53006 * 109.47381 * 209.32854 * 15 14 13 18 18 H 1.09002 * 110.26897 * 301.52599 * 17 15 14 19 19 C 1.54941 * 110.31142 * 63.71922 * 17 15 14 20 20 C 1.55300 * 100.94160 * 155.36538 * 19 17 15 21 21 C 1.54387 * 102.25245 * 325.86689 * 20 19 17 22 22 O 1.43235 * 107.58717 * 21.35900 * 21 20 19 23 23 C 1.52993 * 109.47252 * 89.32422 * 15 14 13 24 24 C 1.53002 * 112.85213 * 59.13700 * 23 15 14 25 25 O 1.42897 * 109.47612 * 185.17089 * 24 23 15 26 26 C 1.53783 * 113.61528 * 287.93651 * 23 15 14 27 27 C 1.53950 * 87.02095 * 220.04875 * 26 23 15 28 28 C 1.53779 * 87.11493 * 25.36164 * 27 26 23 29 29 H 0.97001 * 120.00205 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46733 * 299.99755 * 9 7 2 31 31 H 1.08999 * 109.47089 * 59.99396 * 9 7 2 32 32 H 0.97003 * 120.00076 * 359.97438 * 10 9 7 33 33 H 1.08999 * 109.47154 * 299.99233 * 13 11 10 34 34 H 1.08999 * 109.47566 * 59.99756 * 13 11 10 35 35 H 1.00906 * 111.00227 * 51.22230 * 14 13 11 36 36 H 1.08997 * 111.13074 * 273.28503 * 19 17 15 37 37 H 1.09006 * 111.12623 * 37.44507 * 19 17 15 38 38 H 1.09009 * 110.84904 * 207.68406 * 20 19 17 39 39 H 1.08999 * 110.85214 * 84.05918 * 20 19 17 40 40 H 1.09006 * 109.82957 * 261.84603 * 21 20 19 41 41 H 1.08996 * 109.90341 * 140.91686 * 21 20 19 42 42 H 1.09007 * 109.46591 * 305.16841 * 24 23 15 43 43 H 1.09003 * 109.46902 * 65.16399 * 24 23 15 44 44 H 0.96690 * 114.00231 * 180.02562 * 25 24 23 45 45 H 1.08993 * 113.61538 * 334.57172 * 26 23 15 46 46 H 1.09008 * 113.61070 * 105.46792 * 26 23 15 47 47 H 1.09004 * 113.53916 * 270.81127 * 27 26 23 48 48 H 1.08998 * 113.74613 * 139.94888 * 27 26 23 49 49 H 1.08991 * 113.61886 * 220.08993 * 28 27 26 50 50 H 1.09006 * 113.68884 * 89.19339 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6964 -1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0015 11 6 1.7537 -4.8834 -0.0019 12 8 0.5613 -5.1050 -0.0019 13 6 2.7330 -6.0288 -0.0022 14 7 1.9985 -7.3009 -0.0020 15 6 2.9187 -8.4402 -0.1175 16 1 3.7939 -8.1432 -0.6954 17 6 2.2106 -9.5983 -0.8235 18 1 1.3173 -9.8883 -0.2703 19 6 1.8411 -9.1986 -2.2742 20 6 1.7701 -10.5926 -2.9550 21 6 2.8695 -11.3783 -2.2084 22 8 3.0994 -10.7187 -0.9579 23 6 3.3568 -8.8856 1.2790 24 6 2.1815 -9.3011 2.1661 25 8 2.6564 -9.5865 3.4833 26 6 4.3280 -7.9077 1.9611 27 6 5.0865 -9.1450 2.4747 28 6 4.5098 -9.9033 1.2676 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5575 0.8881 31 1 0.6247 -2.5563 -0.8919 32 1 3.1566 -3.4355 -0.0010 33 1 3.3595 -5.9708 -0.8922 34 1 3.3597 -5.9713 0.8878 35 1 1.3065 -7.3192 -0.7361 36 1 0.8752 -8.6948 -2.3091 37 1 2.6202 -8.5818 -2.7223 38 1 2.0009 -10.5176 -4.0178 39 1 0.7931 -11.0506 -2.8005 40 1 3.7862 -11.3827 -2.7982 41 1 2.5389 -12.4017 -2.0313 42 1 1.4548 -8.4897 2.2098 43 1 1.7086 -10.1905 1.7497 44 1 1.9637 -9.8575 4.1011 45 1 4.9030 -7.3030 1.2599 46 1 3.8679 -7.3165 2.7530 47 1 4.7227 -9.5111 3.4348 48 1 6.1709 -9.0383 2.4459 49 1 4.1963 -10.9209 1.5004 50 1 5.1337 -9.8462 0.3757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878873012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:27 Heat of formation + Delta-G solvation = -139.324382 kcal Electronic energy + Delta-G solvation = -29262.852828 eV Core-core repulsion = 25289.386630 eV Total energy + Delta-G solvation = -3973.466198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55803 -40.37259 -39.74792 -36.93270 -36.29316 -35.91104 -34.33979 -32.97143 -31.94523 -29.60296 -28.93419 -27.25044 -26.40089 -25.65256 -24.37679 -23.45841 -22.47545 -21.38075 -21.33750 -19.43680 -18.94947 -18.47035 -17.83273 -17.61491 -17.05008 -16.92629 -16.80358 -16.27413 -16.12312 -15.75399 -15.50034 -15.45002 -15.15035 -14.68191 -14.47609 -14.24364 -14.03448 -13.88679 -13.73660 -13.47986 -13.17974 -13.05030 -12.93628 -12.84873 -12.68105 -12.64413 -12.43953 -12.25142 -12.23634 -12.12096 -11.71354 -11.50833 -11.21718 -11.10232 -10.78915 -10.76667 -10.70278 -10.60676 -10.32723 -9.82467 -9.42337 -8.28862 -6.45375 1.43183 1.47043 1.55151 1.77999 2.23496 2.42344 2.83143 3.05981 3.23644 3.37797 3.48014 3.61173 3.89124 3.91732 3.94410 4.03244 4.05137 4.16674 4.20690 4.30226 4.32543 4.39988 4.48080 4.52182 4.69334 4.77066 4.81832 4.88299 4.91937 4.92969 4.98281 5.00389 5.02843 5.08009 5.11657 5.21560 5.24859 5.25407 5.34334 5.48919 5.55704 5.68752 5.76858 5.85342 5.91904 6.09109 6.30480 6.65613 6.93325 6.98651 7.23975 7.50648 8.83067 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.002755 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.989629 B =10160.288972 C =11162.559815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.983 3.017 4 H -0.286 1.286 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.269 3.731 10 N -0.709 5.709 11 C 0.495 3.505 12 O -0.589 6.589 13 C 0.056 3.944 14 N -0.670 5.670 15 C 0.113 3.887 16 H 0.065 0.935 17 C 0.084 3.916 18 H 0.072 0.928 19 C -0.161 4.161 20 C -0.148 4.148 21 C 0.044 3.956 22 O -0.381 6.381 23 C -0.062 4.062 24 C 0.109 3.891 25 O -0.579 6.579 26 C -0.127 4.127 27 C -0.136 4.136 28 C -0.098 4.098 29 H 0.269 0.731 30 H -0.015 1.015 31 H -0.012 1.012 32 H 0.408 0.592 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.348 0.652 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.387 0.613 45 H 0.081 0.919 46 H 0.051 0.949 47 H 0.086 0.914 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.264 -24.222 -2.546 26.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.211 1.211 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.146 3.854 10 N -0.359 5.359 11 C 0.282 3.718 12 O -0.470 6.470 13 C -0.076 4.076 14 N -0.305 5.305 15 C 0.003 3.997 16 H 0.082 0.918 17 C 0.026 3.974 18 H 0.089 0.911 19 C -0.198 4.198 20 C -0.185 4.185 21 C -0.032 4.032 22 O -0.300 6.300 23 C -0.063 4.063 24 C 0.031 3.969 25 O -0.386 6.386 26 C -0.164 4.164 27 C -0.173 4.173 28 C -0.136 4.136 29 H 0.077 0.923 30 H 0.003 0.997 31 H 0.006 0.994 32 H 0.243 0.757 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.169 0.831 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.236 0.764 45 H 0.099 0.901 46 H 0.070 0.930 47 H 0.105 0.895 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.939 -24.204 -2.003 26.241 hybrid contribution -0.435 1.118 -0.762 1.421 sum 9.504 -23.086 -2.765 25.118 Atomic orbital electron populations 1.70132 1.08243 1.28604 1.49958 1.26051 0.95763 1.03862 0.93877 0.85230 0.77935 0.76699 0.79499 1.21127 1.18757 1.18583 1.21601 0.94306 0.90654 1.52915 0.89856 1.18499 0.88642 0.84267 0.94013 1.46180 1.11179 1.05570 1.73018 1.21315 0.89878 0.84860 0.75775 1.90636 1.19103 1.85330 1.51926 1.21903 0.94256 0.86899 1.04554 1.60119 1.15644 1.00047 1.54671 1.21549 0.94233 0.89077 0.94804 0.91762 1.22980 0.92353 0.86382 0.95734 0.91060 1.23383 1.03162 0.98636 0.94666 1.23082 0.99939 0.94182 1.01314 1.23280 0.98794 0.96551 0.84608 1.88450 1.60006 1.43181 1.38336 1.21695 0.93850 0.97505 0.93230 1.21656 0.94657 0.98172 0.82416 1.86444 1.39456 1.90914 1.21824 1.22905 0.97534 0.96403 0.99552 1.22907 0.98749 0.96540 0.99146 1.22615 0.96002 0.97218 0.97718 0.92263 0.99679 0.99358 0.75679 0.89782 0.86686 0.83120 0.89649 0.90285 0.88686 0.89986 0.90634 0.90675 0.93634 0.93707 0.76391 0.90062 0.92970 0.89526 0.91911 0.92450 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.98 42.17 29.54 68.60 2.03 44.20 16 4 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.56 -30.18 9.28 25.60 0.24 -29.94 16 8 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 9 C 0.27 14.68 5.43 85.63 0.46 15.15 16 10 N -0.71 -29.46 5.55 -466.81 -2.59 -32.05 16 11 C 0.49 19.23 7.86 87.65 0.69 19.91 16 12 O -0.59 -28.37 16.09 -3.02 -0.05 -28.42 16 13 C 0.06 1.46 5.83 85.56 0.50 1.96 16 14 N -0.67 -16.73 5.42 -495.58 -2.68 -19.42 16 15 C 0.11 2.29 1.45 44.91 0.07 2.35 16 16 H 0.06 1.25 7.65 -2.38 -0.02 1.23 16 17 C 0.08 1.53 2.71 31.26 0.08 1.62 16 18 H 0.07 1.42 6.99 -2.39 -0.02 1.40 16 19 C -0.16 -2.50 5.73 32.05 0.18 -2.32 16 20 C -0.15 -1.76 7.02 31.86 0.22 -1.54 16 21 C 0.04 0.59 7.79 72.45 0.56 1.15 16 22 O -0.38 -7.05 9.06 -148.98 -1.35 -8.40 16 23 C -0.06 -1.32 0.66 -51.65 -0.03 -1.35 16 24 C 0.11 2.41 6.00 71.98 0.43 2.84 16 25 O -0.58 -12.05 10.54 -148.98 -1.57 -13.62 16 26 C -0.13 -2.79 5.24 31.18 0.16 -2.63 16 27 C -0.14 -2.85 7.54 31.18 0.24 -2.61 16 28 C -0.10 -1.99 5.41 31.12 0.17 -1.82 16 29 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 30 H -0.01 -0.92 8.14 -2.38 -0.02 -0.93 16 31 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 32 H 0.41 13.92 8.32 -92.71 -0.77 13.15 16 33 H 0.08 1.75 7.93 -2.39 -0.02 1.73 16 34 H 0.12 2.78 5.86 -2.39 -0.01 2.77 16 35 H 0.35 9.14 6.54 -89.69 -0.59 8.56 16 36 H 0.08 1.39 7.65 -2.39 -0.02 1.37 16 37 H 0.08 1.22 8.05 -2.38 -0.02 1.20 16 38 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.05 1.18 7.68 -2.38 -0.02 1.17 16 43 H 0.04 0.94 7.11 -2.39 -0.02 0.92 16 44 H 0.39 5.06 9.12 -74.06 -0.68 4.38 16 45 H 0.08 1.61 7.49 -2.39 -0.02 1.59 16 46 H 0.05 1.33 8.09 -2.38 -0.02 1.32 16 47 H 0.09 2.00 6.18 -2.39 -0.01 1.99 16 48 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 50 H 0.08 1.55 7.96 -2.38 -0.02 1.53 16 Total: -1.00 -71.91 387.82 -2.57 -74.47 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -1.07 Total: 35.60 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 4.44 Total: 3.46 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -4.99 Total: -107.30 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -2.97 Total: -50.44 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -71.91 -2.57 -74.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878873012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.851 kcal (2) G-P(sol) polarization free energy of solvation -71.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds