Wall clock time and date at job start Tue Mar 31 2020 05:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99709 * 2 1 4 4 H 1.48498 * 109.47483 * 269.99962 * 3 2 1 5 5 H 1.48503 * 109.47037 * 30.00106 * 3 2 1 6 6 H 1.48505 * 109.47511 * 149.99924 * 3 2 1 7 7 C 1.38809 * 120.00554 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00535 * 182.79672 * 7 2 1 9 9 N 1.36939 * 119.99909 * 2.79064 * 7 2 1 10 10 C 1.47164 * 121.06616 * 145.55993 * 9 7 2 11 11 C 1.53277 * 108.55111 * 128.89341 * 10 9 7 12 12 O 1.43102 * 109.23009 * 52.89107 * 11 10 9 13 13 C 1.42062 * 114.33313 * 298.85732 * 12 11 10 14 14 C 1.54494 * 110.38368 * 182.83071 * 13 12 11 15 15 C 1.55277 * 101.42456 * 83.74013 * 14 13 12 16 16 N 1.47492 * 104.77159 * 36.69421 * 15 14 13 17 17 C 1.34774 * 125.66074 * 155.88336 * 16 15 14 18 18 O 1.21283 * 120.00037 * 185.40903 * 17 16 15 19 19 C 1.50701 * 120.00228 * 5.41448 * 17 16 15 20 20 C 1.53006 * 112.90410 * 284.53928 * 19 17 16 21 21 F 1.39906 * 109.47021 * 316.17577 * 20 19 17 22 22 C 1.53780 * 113.61841 * 55.78707 * 19 17 16 23 23 C 1.53783 * 87.17032 * 89.16387 * 22 19 17 24 24 C 1.53774 * 87.08082 * 25.39159 * 23 22 19 25 25 C 1.47178 * 108.67468 * 335.61857 * 16 15 14 26 26 C 1.47310 * 121.06861 * 325.58459 * 9 7 2 27 27 H 0.96996 * 120.00407 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.62566 * 248.60935 * 10 9 7 29 29 H 1.08997 * 109.62445 * 8.98541 * 10 9 7 30 30 H 1.08998 * 109.51242 * 172.82183 * 11 10 9 31 31 H 1.08999 * 109.51020 * 292.97077 * 11 10 9 32 32 H 1.09003 * 111.00919 * 201.99626 * 14 13 12 33 33 H 1.08997 * 111.01096 * 325.83350 * 14 13 12 34 34 H 1.08988 * 110.50631 * 277.83549 * 15 14 13 35 35 H 1.08997 * 110.32543 * 155.45795 * 15 14 13 36 36 H 1.08998 * 109.46871 * 76.16953 * 20 19 17 37 37 H 1.08992 * 109.47210 * 196.17376 * 20 19 17 38 38 H 1.09002 * 113.61168 * 334.57004 * 22 19 17 39 39 H 1.09000 * 113.61590 * 203.75446 * 22 19 17 40 40 H 1.09000 * 113.61527 * 139.94398 * 23 22 19 41 41 H 1.09008 * 113.60845 * 270.84220 * 23 22 19 42 42 H 1.08999 * 113.61436 * 89.11929 * 24 23 22 43 43 H 1.09010 * 113.61440 * 219.93381 * 24 23 22 44 44 H 1.09004 * 109.90736 * 121.14886 * 25 16 15 45 45 H 1.08997 * 109.90964 * 242.22068 * 25 16 15 46 46 H 1.08996 * 109.67911 * 109.64609 * 26 9 7 47 47 H 1.09001 * 109.70733 * 349.11579 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6526 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0894 -1.2026 0.0451 9 7 1.3269 -2.3873 -0.0588 10 6 1.8778 -3.5470 -0.7781 11 6 1.8374 -4.7631 0.1539 12 8 0.5104 -4.9206 0.6659 13 6 0.0435 -3.8184 1.4309 14 6 -1.3640 -4.1131 1.9957 15 6 -1.0186 -4.9187 3.2774 16 7 0.2074 -4.2867 3.7999 17 6 0.6226 -4.3182 5.0817 18 8 1.5974 -3.6803 5.4192 19 6 -0.1242 -5.1461 6.0956 20 6 -1.4447 -4.5070 6.5300 21 9 -1.2489 -3.1404 6.7569 22 6 -0.2561 -6.6275 5.7045 23 6 1.0822 -6.8584 6.4259 24 6 0.7505 -5.6176 7.2715 25 6 0.9052 -3.6213 2.6879 26 6 0.0165 -2.5423 0.5960 27 1 -0.4850 0.8400 -0.0004 28 1 1.2776 -3.7461 -1.6659 29 1 2.9073 -3.3408 -1.0710 30 1 2.1219 -5.6569 -0.4013 31 1 2.5309 -4.6112 0.9810 32 1 -1.8886 -3.1892 2.2395 33 1 -1.9454 -4.7183 1.3002 34 1 -0.8313 -5.9641 3.0324 35 1 -1.8264 -4.8377 4.0047 36 1 -2.1891 -4.6420 5.7453 37 1 -1.7935 -4.9813 7.4472 38 1 -0.2084 -6.8011 4.6294 39 1 -1.0996 -7.1305 6.1774 40 1 1.1140 -7.7834 7.0016 41 1 1.9528 -6.7286 5.7829 42 1 0.1820 -5.8434 8.1737 43 1 1.6112 -4.9767 7.4629 44 1 1.0133 -2.5578 2.9009 45 1 1.8869 -4.0723 2.5429 46 1 -0.7653 -2.6146 -0.1600 47 1 -0.1754 -1.6853 1.2417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972560615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:36 Heat of formation + Delta-G solvation = -71.227538 kcal Electronic energy + Delta-G solvation = -30325.965406 eV Core-core repulsion = 26231.991804 eV Total energy + Delta-G solvation = -4093.973603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -47.67901 -40.77945 -39.37930 -37.34051 -36.08377 -34.44451 -31.74663 -31.23481 -29.61702 -29.00396 -27.60828 -26.09678 -25.73737 -24.05007 -23.21942 -22.91732 -21.07980 -21.02170 -18.72637 -18.56094 -17.00287 -16.81657 -16.48018 -16.27823 -15.95223 -15.72164 -15.22105 -15.02791 -14.62276 -14.45006 -14.34658 -14.03712 -13.46042 -13.43941 -13.10391 -12.82483 -12.79228 -12.69788 -12.48786 -12.28724 -11.99592 -11.81955 -11.47179 -11.32156 -11.16715 -10.99748 -10.91931 -10.84077 -10.71646 -10.51463 -10.44058 -10.36949 -10.23074 -10.02786 -9.61865 -9.54951 -9.00819 -8.54783 -8.36175 -6.63944 -5.86246 -3.38598 2.73162 3.08459 3.36053 3.42772 3.44073 3.99522 4.16590 4.23212 4.34044 4.42809 4.51742 4.59252 4.70064 4.84974 4.89886 4.99758 5.17593 5.26232 5.34532 5.35723 5.38005 5.45128 5.47996 5.60216 5.68298 5.72249 5.81448 5.85518 5.87353 5.92458 6.03460 6.09434 6.10835 6.20498 6.25652 6.33251 6.49149 6.59941 6.64095 6.78604 7.09789 7.50725 7.72985 7.73593 7.90818 8.34373 8.39215 9.13067 9.71437 10.32178 11.21215 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015194 B = 0.004187 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.361174 B = 6686.361018 C = 7415.060282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.012 3.988 3 Si 0.904 3.096 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.110 3.890 11 C 0.044 3.956 12 O -0.377 6.377 13 C 0.084 3.916 14 C -0.117 4.117 15 C 0.101 3.899 16 N -0.610 5.610 17 C 0.554 3.446 18 O -0.531 6.531 19 C -0.140 4.140 20 C 0.082 3.918 21 F -0.208 7.208 22 C -0.126 4.126 23 C -0.140 4.140 24 C -0.116 4.116 25 C 0.099 3.901 26 C 0.162 3.838 27 H 0.256 0.744 28 H 0.027 0.973 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.031 0.969 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.128 -15.623 10.378 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.187 4.187 3 Si 0.734 3.266 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.320 5.320 10 C -0.016 4.016 11 C -0.034 4.034 12 O -0.296 6.296 13 C 0.042 3.958 14 C -0.156 4.156 15 C -0.022 4.022 16 N -0.343 5.343 17 C 0.341 3.659 18 O -0.407 6.407 19 C -0.144 4.144 20 C 0.027 3.973 21 F -0.189 7.189 22 C -0.163 4.163 23 C -0.177 4.177 24 C -0.153 4.153 25 C -0.023 4.023 26 C 0.036 3.964 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.765 -15.225 10.602 19.155 hybrid contribution 0.556 1.158 -0.109 1.289 sum -4.209 -14.067 10.492 18.047 Atomic orbital electron populations 1.69863 1.05364 1.25751 1.53912 1.25291 0.95572 0.98354 0.99449 0.86259 0.79270 0.83371 0.77735 1.21194 1.21521 1.20306 1.19135 0.90560 0.82794 1.46106 0.91628 1.44025 1.20101 1.09135 1.58733 1.21598 0.98394 0.88130 0.93491 1.23097 0.83957 0.99214 0.97151 1.87649 1.31469 1.40782 1.69664 1.22750 0.92091 0.90686 0.90239 1.22763 0.96252 1.01120 0.95439 1.22553 0.86510 0.97270 0.95887 1.48516 1.24901 1.53709 1.07222 1.19199 0.84355 0.81307 0.81044 1.90700 1.27831 1.43594 1.78559 1.22693 0.97150 0.96396 0.98147 1.21988 0.95791 0.77229 1.02273 1.92834 1.96405 1.33399 1.96246 1.23038 0.99009 0.92082 1.02208 1.22819 0.97511 0.98340 0.99045 1.22925 1.00010 0.97251 0.95159 1.22519 0.96030 0.98820 0.84917 1.21362 0.87645 0.92582 0.94783 0.93335 0.95534 0.91912 0.89903 0.93614 0.88936 0.89080 0.90954 0.91198 0.90204 0.89770 0.90025 0.88819 0.90738 0.89958 0.89200 0.89594 0.89793 0.91416 0.95072 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.61 10.73 55.49 0.60 -25.01 16 2 C 0.01 0.34 5.31 -17.43 -0.09 0.25 16 3 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.26 -6.96 9.62 -15.06 -0.14 -7.11 16 8 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 9 N -0.60 -14.71 2.97 -172.17 -0.51 -15.22 16 10 C 0.11 2.28 6.72 -3.54 -0.02 2.26 16 11 C 0.04 0.78 6.76 37.30 0.25 1.03 16 12 O -0.38 -6.99 10.26 -35.23 -0.36 -7.35 16 13 C 0.08 1.59 0.80 -89.73 -0.07 1.51 16 14 C -0.12 -1.75 6.23 -24.74 -0.15 -1.91 16 15 C 0.10 1.30 5.47 -2.29 -0.01 1.28 16 16 N -0.61 -10.10 3.30 -170.52 -0.56 -10.66 16 17 C 0.55 9.39 5.96 -10.99 -0.07 9.33 16 18 O -0.53 -11.31 16.44 5.55 0.09 -11.22 16 19 C -0.14 -1.66 0.64 -154.76 -0.10 -1.76 16 20 C 0.08 0.86 6.85 37.16 0.25 1.11 16 21 F -0.21 -3.14 16.80 2.25 0.04 -3.10 16 22 C -0.13 -1.10 6.69 -25.92 -0.17 -1.28 16 23 C -0.14 -1.33 7.81 -25.92 -0.20 -1.53 16 24 C -0.12 -1.23 7.13 -25.83 -0.18 -1.42 16 25 C 0.10 1.94 5.95 -3.32 -0.02 1.92 16 26 C 0.16 3.77 3.91 -3.85 -0.02 3.75 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 0.84 6.22 -51.93 -0.32 0.52 16 32 H 0.09 1.39 8.01 -51.93 -0.42 0.98 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 0.85 6.89 -51.94 -0.36 0.49 16 35 H 0.07 0.72 5.60 -51.93 -0.29 0.43 16 36 H 0.08 0.69 6.08 -51.93 -0.32 0.37 16 37 H 0.08 0.61 7.85 -51.93 -0.41 0.20 16 38 H 0.08 0.78 5.84 -51.93 -0.30 0.47 16 39 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 42 H 0.09 0.72 7.90 -51.93 -0.41 0.31 16 43 H 0.09 1.13 7.42 -51.92 -0.39 0.75 16 44 H 0.08 1.94 7.61 -51.93 -0.40 1.54 16 45 H 0.07 1.40 6.01 -51.93 -0.31 1.09 16 46 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.10 2.70 5.94 -51.93 -0.31 2.40 16 LS Contribution 359.64 15.07 5.42 5.42 Total: -1.00 -32.72 359.64 -8.21 -40.93 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.14 Total: 2.02 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -0.75 Total: 7.46 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.48 Total: -50.89 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.27 Total: -18.57 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.04 Total: -3.10 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.72 -8.21 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972560615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.298 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds