Wall clock time and date at job start Tue Mar 31 2020 05:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.51933 * 2 1 4 4 C 1.53077 * 109.38461 * 239.83649 * 2 1 3 5 5 C 1.53031 * 109.65777 * 301.27208 * 4 2 1 6 6 C 1.53195 * 109.31561 * 298.70377 * 5 4 2 7 7 H 1.09001 * 109.58491 * 294.84637 * 6 5 4 8 8 C 1.52999 * 109.58973 * 174.42402 * 6 5 4 9 9 N 1.46497 * 109.47350 * 180.18972 * 8 6 5 10 10 C 1.34773 * 120.00089 * 179.97438 * 9 8 6 11 11 O 1.21286 * 119.99959 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99900 * 180.02562 * 10 9 8 13 13 H 1.09003 * 109.52595 * 304.99650 * 12 10 9 14 14 C 1.53134 * 109.52825 * 65.13252 * 12 10 9 15 15 O 1.43087 * 109.14568 * 175.14362 * 14 12 10 16 16 C 1.43073 * 113.65071 * 302.15041 * 15 14 12 17 17 C 1.53144 * 109.15031 * 57.91432 * 16 15 14 18 18 O 1.43076 * 109.15178 * 304.68972 * 17 16 15 19 19 N 1.46917 * 108.77466 * 54.63255 * 6 5 4 20 20 C 1.36946 * 120.62848 * 126.37084 * 19 6 5 21 21 H 1.07997 * 119.99756 * 327.60188 * 20 19 6 22 22 C 1.38810 * 119.99526 * 147.60008 * 20 19 6 23 23 N 1.31615 * 120.00781 * 349.23740 * 22 20 19 24 24 Si 1.86806 * 119.99342 * 169.24156 * 22 20 19 25 25 H 1.48493 * 109.47424 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47125 * 120.00287 * 24 22 20 27 27 H 1.48504 * 109.46820 * 239.99531 * 24 22 20 28 28 C 1.46919 * 118.74225 * 306.39699 * 19 6 5 29 29 H 1.09004 * 109.46940 * 299.91339 * 1 2 3 30 30 H 1.08997 * 109.47560 * 59.91597 * 1 2 3 31 31 H 1.08996 * 109.47335 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46569 * 180.08680 * 3 2 1 33 33 H 1.08997 * 109.47662 * 300.08071 * 3 2 1 34 34 H 1.08998 * 109.47136 * 60.08766 * 3 2 1 35 35 H 1.09005 * 109.34180 * 181.24688 * 4 2 1 36 36 H 1.09001 * 109.44577 * 61.36301 * 4 2 1 37 37 H 1.09005 * 109.49829 * 178.75338 * 5 4 2 38 38 H 1.08996 * 109.52757 * 58.67554 * 5 4 2 39 39 H 1.09003 * 109.47207 * 300.19736 * 8 6 5 40 40 H 1.09002 * 109.46801 * 60.18908 * 8 6 5 41 41 H 0.97004 * 119.99872 * 0.02562 * 9 8 6 42 42 H 1.09001 * 109.52526 * 295.12043 * 14 12 10 43 43 H 1.09001 * 109.52385 * 55.31068 * 14 12 10 44 44 H 1.09000 * 109.52634 * 298.01021 * 16 15 14 45 45 H 1.09002 * 109.52364 * 177.82107 * 16 15 14 46 46 H 1.08998 * 109.52358 * 184.78388 * 17 16 15 47 47 H 1.09001 * 109.57459 * 64.62553 * 17 16 15 48 48 H 0.96996 * 120.00482 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.59223 * 173.39632 * 28 19 6 50 50 H 1.09009 * 109.58784 * 293.67492 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 6 2.0381 -0.7256 -1.2485 5 6 1.5033 -2.1593 -1.2641 6 6 2.0171 -2.9053 -0.0287 7 1 3.1012 -3.0034 -0.0858 8 6 1.3764 -4.2932 0.0359 9 7 1.8660 -5.0025 1.2205 10 6 1.4345 -6.2518 1.4842 11 8 0.6411 -6.7889 0.7405 12 6 1.9378 -6.9812 2.7031 13 1 3.0274 -7.0067 2.6883 14 6 1.4598 -6.2586 3.9657 15 8 1.8448 -7.0183 5.1155 16 6 1.3353 -8.3553 5.1169 17 6 1.8147 -9.0770 3.8542 18 8 1.4282 -8.3181 2.7045 19 7 1.6545 -2.1390 1.1712 20 6 0.9684 -2.7325 2.1971 21 1 0.2565 -3.5172 1.9878 22 6 1.1881 -2.3255 3.5059 23 7 2.1967 -1.5278 3.7866 24 14 0.0521 -2.9100 4.8688 25 1 -0.9965 -3.7912 4.2954 26 1 0.8373 -3.6657 5.8776 27 1 -0.5877 -1.7370 5.5170 28 6 2.0413 -0.7239 1.2494 29 1 -0.3633 0.5125 0.8908 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1312 1.4411 -0.0016 33 1 1.6772 1.9567 -0.8892 34 1 1.6796 1.9558 0.8908 35 1 3.1279 -0.7445 -1.2366 36 1 1.6938 -0.1998 -2.1391 37 1 1.8484 -2.6666 -2.1651 38 1 0.4135 -2.1418 -1.2514 39 1 0.2928 -4.1907 0.0957 40 1 1.6391 -4.8566 -0.8595 41 1 2.5003 -4.5728 1.8154 42 1 1.9138 -5.2688 4.0130 43 1 0.3743 -6.1616 3.9412 44 1 0.2457 -8.3298 5.1306 45 1 1.6993 -8.8829 5.9986 46 1 1.3615 -10.0672 3.8063 47 1 2.9001 -9.1740 3.8788 48 1 2.3499 -1.2431 4.7011 49 1 1.6008 -0.2731 2.1388 50 1 3.1274 -0.6441 1.2992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089608939.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:29 Heat of formation + Delta-G solvation = -106.853137 kcal Electronic energy + Delta-G solvation = -30785.333701 eV Core-core repulsion = 26813.275561 eV Total energy + Delta-G solvation = -3972.058139 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.21842 -39.00187 -38.16777 -35.93068 -35.03846 -33.25571 -32.45815 -31.37725 -30.03288 -28.44370 -27.04672 -26.61876 -25.53532 -24.91737 -23.37515 -22.28225 -21.61047 -20.17157 -19.84044 -17.92952 -17.44090 -16.84782 -16.45562 -16.19282 -15.86058 -15.45911 -15.26558 -14.92370 -14.36274 -14.24351 -14.05129 -13.78351 -13.56252 -13.36019 -13.23629 -13.07326 -12.70438 -12.47841 -12.23622 -12.15961 -11.67498 -11.51665 -11.39808 -11.29577 -11.15663 -10.88602 -10.85171 -10.75693 -10.65835 -10.44611 -10.43238 -10.14426 -10.08579 -9.81977 -9.50630 -9.37771 -9.26886 -9.04831 -8.63963 -8.29873 -6.67258 -5.89433 -3.38129 3.01903 3.17073 3.27196 3.37879 3.39823 3.77927 4.22364 4.36092 4.60805 4.96156 5.01102 5.05576 5.14648 5.17961 5.24894 5.29618 5.43101 5.46482 5.51115 5.58912 5.61832 5.73778 5.77471 5.85223 5.98813 6.00526 6.08248 6.15714 6.22098 6.30706 6.34952 6.43393 6.46162 6.46931 6.50711 6.63915 6.89414 6.91237 6.93866 7.00173 7.01562 7.10678 7.12891 7.36667 7.65577 7.73646 8.14947 8.36689 8.75520 9.11409 9.72022 10.31274 11.16553 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015828 B = 0.004641 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.627131 B = 6031.462715 C = 7270.246100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.095 4.095 5 C -0.130 4.130 6 C 0.160 3.840 7 H 0.033 0.967 8 C 0.137 3.863 9 N -0.689 5.689 10 C 0.517 3.483 11 O -0.540 6.540 12 C 0.041 3.959 13 H 0.090 0.910 14 C 0.035 3.965 15 O -0.372 6.372 16 C 0.018 3.982 17 C 0.024 3.976 18 O -0.352 6.352 19 N -0.585 5.585 20 C -0.250 4.250 21 H 0.069 0.931 22 C 0.012 3.988 23 N -0.896 5.896 24 Si 0.876 3.124 25 H -0.276 1.276 26 H -0.281 1.281 27 H -0.289 1.289 28 C 0.188 3.812 29 H 0.044 0.956 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.415 0.585 42 H 0.124 0.876 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.061 0.939 48 H 0.254 0.746 49 H 0.086 0.914 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 -5.035 -2.778 6.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.097 4.097 3 C -0.191 4.191 4 C -0.133 4.133 5 C -0.170 4.170 6 C 0.053 3.947 7 H 0.050 0.950 8 C 0.013 3.987 9 N -0.342 5.342 10 C 0.300 3.700 11 O -0.417 6.417 12 C -0.020 4.020 13 H 0.108 0.892 14 C -0.042 4.042 15 O -0.291 6.291 16 C -0.059 4.059 17 C -0.053 4.053 18 O -0.270 6.270 19 N -0.308 5.308 20 C -0.380 4.380 21 H 0.086 0.914 22 C -0.187 4.187 23 N -0.539 5.539 24 Si 0.705 3.295 25 H -0.201 1.201 26 H -0.207 1.207 27 H -0.216 1.216 28 C 0.062 3.938 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.253 0.747 42 H 0.142 0.858 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.105 0.895 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 1.450 -5.362 -3.136 6.379 hybrid contribution -0.312 0.040 1.190 1.231 sum 1.138 -5.322 -1.946 5.779 Atomic orbital electron populations 1.21703 0.95179 1.02049 0.99228 1.21253 0.95832 0.94393 0.98211 1.21753 1.00356 0.96494 1.00508 1.21409 0.99597 0.95304 0.96995 1.22000 1.01324 0.96059 0.97573 1.20742 0.96038 0.89209 0.88679 0.94996 1.21312 0.99608 0.91645 0.86139 1.45906 1.46735 1.13558 1.27961 1.19727 0.82207 0.82210 0.85822 1.90668 1.34226 1.67380 1.49466 1.22566 0.99346 0.84776 0.95326 0.89191 1.23286 1.01269 0.95920 0.83722 1.88141 1.74941 1.23794 1.42194 1.23286 0.99393 0.84311 0.98873 1.23295 1.00328 0.95713 0.85960 1.88203 1.74741 1.22366 1.41723 1.44018 1.65583 1.05621 1.15625 1.19202 1.15649 1.18433 0.84688 0.91361 1.25070 0.96584 0.99956 0.97137 1.69962 1.28141 1.37184 1.18661 0.86674 0.81100 0.78609 0.83120 1.20121 1.20705 1.21588 1.20808 0.96056 0.83054 0.93867 0.93673 0.95073 0.91621 0.93345 0.93997 0.93044 0.92960 0.93672 0.93118 0.91618 0.91454 0.92564 0.74696 0.85820 0.91561 0.92074 0.87794 0.87598 0.92066 0.93535 0.89546 0.96479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 7.99 37.16 0.30 -1.86 16 2 C -0.10 -1.64 0.78 -154.37 -0.12 -1.76 16 3 C -0.13 -2.05 8.49 37.16 0.32 -1.73 16 4 C -0.10 -1.50 4.71 -26.68 -0.13 -1.62 16 5 C -0.13 -2.07 5.03 -26.61 -0.13 -2.20 16 6 C 0.16 2.91 3.01 -67.60 -0.20 2.70 16 7 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 8 C 0.14 2.47 4.43 -4.04 -0.02 2.45 16 9 N -0.69 -12.64 3.85 -60.29 -0.23 -12.87 16 10 C 0.52 9.90 7.18 -10.99 -0.08 9.82 16 11 O -0.54 -12.09 16.51 -14.26 -0.24 -12.33 16 12 C 0.04 0.70 3.25 -27.81 -0.09 0.61 16 13 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 14 C 0.04 0.62 6.05 37.23 0.23 0.84 16 15 O -0.37 -6.13 10.84 -48.80 -0.53 -6.66 16 16 C 0.02 0.23 7.05 37.23 0.26 0.49 16 17 C 0.02 0.30 7.05 37.23 0.26 0.56 16 18 O -0.35 -5.93 10.03 -62.51 -0.63 -6.56 16 19 N -0.59 -12.35 2.42 -164.78 -0.40 -12.75 16 20 C -0.25 -5.80 6.94 -15.06 -0.10 -5.90 16 21 H 0.07 1.65 5.92 -52.49 -0.31 1.34 16 22 C 0.01 0.30 5.04 -17.43 -0.09 0.21 16 23 N -0.90 -23.04 11.14 55.49 0.62 -22.42 16 24 Si 0.88 20.14 28.53 -169.99 -4.85 15.29 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 C 0.19 3.96 3.92 -3.72 -0.01 3.95 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.24 5.98 -51.93 -0.31 0.93 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 39 H 0.07 1.34 7.40 -51.93 -0.38 0.96 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.42 7.75 7.34 -40.82 -0.30 7.45 16 42 H 0.12 2.30 7.24 -51.93 -0.38 1.92 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.25 6.51 8.31 -40.82 -0.34 6.17 16 49 H 0.09 2.11 6.19 -51.93 -0.32 1.78 16 50 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -28.19 378.69 -8.81 -37.00 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -8.65 Total: 9.04 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 0.39 Total: 6.55 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.01 Total: -48.04 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -1.39 Total: -25.55 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.85 Total: 15.29 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.19 -8.81 -37.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089608939.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.852 kcal (2) G-P(sol) polarization free energy of solvation -28.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds