Wall clock time and date at job start Tue Mar 31 2020 05:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.51933 * 2 1 4 4 C 1.53077 * 109.38461 * 239.83649 * 2 1 3 5 5 C 1.53031 * 109.65777 * 301.27208 * 4 2 1 6 6 C 1.53195 * 109.31561 * 298.70377 * 5 4 2 7 7 H 1.09001 * 109.58491 * 294.84637 * 6 5 4 8 8 C 1.52999 * 109.58973 * 174.42402 * 6 5 4 9 9 N 1.46497 * 109.47350 * 180.18972 * 8 6 5 10 10 C 1.34773 * 120.00089 * 179.97438 * 9 8 6 11 11 O 1.21286 * 119.99959 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99900 * 180.02562 * 10 9 8 13 13 H 1.09003 * 109.52595 * 304.99650 * 12 10 9 14 14 C 1.53134 * 109.52825 * 65.13252 * 12 10 9 15 15 O 1.43087 * 109.14568 * 175.14362 * 14 12 10 16 16 C 1.43073 * 113.65071 * 302.15041 * 15 14 12 17 17 C 1.53144 * 109.15031 * 57.91432 * 16 15 14 18 18 O 1.43076 * 109.15178 * 304.68972 * 17 16 15 19 19 N 1.46917 * 108.77466 * 54.63255 * 6 5 4 20 20 C 1.36946 * 120.62848 * 126.37084 * 19 6 5 21 21 H 1.07997 * 119.99756 * 327.60188 * 20 19 6 22 22 C 1.38810 * 119.99526 * 147.60008 * 20 19 6 23 23 N 1.31615 * 120.00781 * 349.23740 * 22 20 19 24 24 Si 1.86806 * 119.99342 * 169.24156 * 22 20 19 25 25 H 1.48493 * 109.47424 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47125 * 120.00287 * 24 22 20 27 27 H 1.48504 * 109.46820 * 239.99531 * 24 22 20 28 28 C 1.46919 * 118.74225 * 306.39699 * 19 6 5 29 29 H 1.09004 * 109.46940 * 299.91339 * 1 2 3 30 30 H 1.08997 * 109.47560 * 59.91597 * 1 2 3 31 31 H 1.08996 * 109.47335 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46569 * 180.08680 * 3 2 1 33 33 H 1.08997 * 109.47662 * 300.08071 * 3 2 1 34 34 H 1.08998 * 109.47136 * 60.08766 * 3 2 1 35 35 H 1.09005 * 109.34180 * 181.24688 * 4 2 1 36 36 H 1.09001 * 109.44577 * 61.36301 * 4 2 1 37 37 H 1.09005 * 109.49829 * 178.75338 * 5 4 2 38 38 H 1.08996 * 109.52757 * 58.67554 * 5 4 2 39 39 H 1.09003 * 109.47207 * 300.19736 * 8 6 5 40 40 H 1.09002 * 109.46801 * 60.18908 * 8 6 5 41 41 H 0.97004 * 119.99872 * 0.02562 * 9 8 6 42 42 H 1.09001 * 109.52526 * 295.12043 * 14 12 10 43 43 H 1.09001 * 109.52385 * 55.31068 * 14 12 10 44 44 H 1.09000 * 109.52634 * 298.01021 * 16 15 14 45 45 H 1.09002 * 109.52364 * 177.82107 * 16 15 14 46 46 H 1.08998 * 109.52358 * 184.78388 * 17 16 15 47 47 H 1.09001 * 109.57459 * 64.62553 * 17 16 15 48 48 H 0.96996 * 120.00482 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.59223 * 173.39632 * 28 19 6 50 50 H 1.09009 * 109.58784 * 293.67492 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 6 2.0381 -0.7256 -1.2485 5 6 1.5033 -2.1593 -1.2641 6 6 2.0171 -2.9053 -0.0287 7 1 3.1012 -3.0034 -0.0858 8 6 1.3764 -4.2932 0.0359 9 7 1.8660 -5.0025 1.2205 10 6 1.4345 -6.2518 1.4842 11 8 0.6411 -6.7889 0.7405 12 6 1.9378 -6.9812 2.7031 13 1 3.0274 -7.0067 2.6883 14 6 1.4598 -6.2586 3.9657 15 8 1.8448 -7.0183 5.1155 16 6 1.3353 -8.3553 5.1169 17 6 1.8147 -9.0770 3.8542 18 8 1.4282 -8.3181 2.7045 19 7 1.6545 -2.1390 1.1712 20 6 0.9684 -2.7325 2.1971 21 1 0.2565 -3.5172 1.9878 22 6 1.1881 -2.3255 3.5059 23 7 2.1967 -1.5278 3.7866 24 14 0.0521 -2.9100 4.8688 25 1 -0.9965 -3.7912 4.2954 26 1 0.8373 -3.6657 5.8776 27 1 -0.5877 -1.7370 5.5170 28 6 2.0413 -0.7239 1.2494 29 1 -0.3633 0.5125 0.8908 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1312 1.4411 -0.0016 33 1 1.6772 1.9567 -0.8892 34 1 1.6796 1.9558 0.8908 35 1 3.1279 -0.7445 -1.2366 36 1 1.6938 -0.1998 -2.1391 37 1 1.8484 -2.6666 -2.1651 38 1 0.4135 -2.1418 -1.2514 39 1 0.2928 -4.1907 0.0957 40 1 1.6391 -4.8566 -0.8595 41 1 2.5003 -4.5728 1.8154 42 1 1.9138 -5.2688 4.0130 43 1 0.3743 -6.1616 3.9412 44 1 0.2457 -8.3298 5.1306 45 1 1.6993 -8.8829 5.9986 46 1 1.3615 -10.0672 3.8063 47 1 2.9001 -9.1740 3.8788 48 1 2.3499 -1.2431 4.7011 49 1 1.6008 -0.2731 2.1388 50 1 3.1274 -0.6441 1.2992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089608939.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:28 Heat of formation + Delta-G solvation = -123.653287 kcal Electronic energy + Delta-G solvation = -30786.062210 eV Core-core repulsion = 26813.275561 eV Total energy + Delta-G solvation = -3972.786649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.56722 -40.44323 -39.63567 -37.19222 -36.55204 -34.99985 -33.93710 -32.62959 -31.71977 -29.68270 -28.41099 -27.99480 -27.30847 -26.20967 -24.81762 -23.82025 -22.79652 -21.72792 -21.30010 -19.45155 -18.89332 -18.13448 -17.94542 -17.60194 -17.28234 -16.86738 -16.59819 -16.34717 -15.97592 -15.68738 -15.58830 -15.24079 -15.04845 -14.74523 -14.62599 -14.51808 -14.08142 -13.93672 -13.72362 -13.43148 -13.06730 -12.99727 -12.81204 -12.72009 -12.69849 -12.50672 -12.47077 -12.20503 -12.10508 -11.95483 -11.84967 -11.69217 -11.56901 -11.23388 -10.99929 -10.87526 -10.75520 -10.47450 -10.32993 -9.90042 -8.47397 -7.79626 -5.27339 1.35638 1.46669 1.48145 1.50691 1.85559 2.47026 2.57624 2.94975 3.34390 3.39702 3.60531 3.73565 3.74412 3.92539 4.01374 4.06696 4.08304 4.19098 4.23168 4.34969 4.41804 4.44751 4.49323 4.55511 4.70476 4.73779 4.74373 4.76932 4.89213 4.95766 4.97626 5.08163 5.12730 5.16770 5.19158 5.28460 5.43283 5.47905 5.54869 5.60039 5.65678 5.75211 5.81529 5.83979 5.85076 5.93654 6.49320 6.61645 7.21812 7.24740 7.92995 8.46926 9.23765 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015828 B = 0.004641 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.627131 B = 6031.462715 C = 7270.246100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.092 4.092 3 C -0.128 4.128 4 C -0.091 4.091 5 C -0.125 4.125 6 C 0.161 3.839 7 H 0.035 0.965 8 C 0.140 3.860 9 N -0.685 5.685 10 C 0.515 3.485 11 O -0.575 6.575 12 C 0.050 3.950 13 H 0.114 0.886 14 C 0.044 3.956 15 O -0.387 6.387 16 C 0.011 3.989 17 C 0.020 3.980 18 O -0.377 6.377 19 N -0.595 5.595 20 C -0.226 4.226 21 H 0.059 0.941 22 C -0.021 4.021 23 N -0.918 5.918 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.282 1.282 27 H -0.302 1.302 28 C 0.197 3.803 29 H 0.027 0.973 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.414 0.586 42 H 0.108 0.892 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.140 0.860 46 H 0.136 0.864 47 H 0.079 0.921 48 H 0.247 0.753 49 H 0.049 0.951 50 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.570 -5.761 -4.309 7.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 C -0.186 4.186 4 C -0.128 4.128 5 C -0.164 4.164 6 C 0.055 3.945 7 H 0.053 0.947 8 C 0.016 3.984 9 N -0.337 5.337 10 C 0.300 3.700 11 O -0.455 6.455 12 C -0.011 4.011 13 H 0.131 0.869 14 C -0.034 4.034 15 O -0.306 6.306 16 C -0.066 4.066 17 C -0.056 4.056 18 O -0.296 6.296 19 N -0.319 5.319 20 C -0.357 4.357 21 H 0.076 0.924 22 C -0.218 4.218 23 N -0.565 5.565 24 Si 0.743 3.257 25 H -0.206 1.206 26 H -0.209 1.209 27 H -0.229 1.229 28 C 0.072 3.928 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.251 0.749 42 H 0.126 0.874 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.158 0.842 46 H 0.154 0.846 47 H 0.097 0.903 48 H 0.057 0.943 49 H 0.067 0.933 50 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 2.061 -6.095 -4.678 7.955 hybrid contribution -0.523 0.187 1.669 1.759 sum 1.538 -5.908 -3.008 6.806 Atomic orbital electron populations 1.21624 0.95148 1.00960 0.99740 1.21164 0.95747 0.95419 0.97071 1.21702 1.00555 0.95098 1.01266 1.21386 0.99724 0.94925 0.96797 1.21949 1.00935 0.96300 0.97202 1.20882 0.96148 0.89113 0.88373 0.94748 1.21314 0.98320 0.91962 0.86762 1.45928 1.46322 1.13472 1.27946 1.20158 0.81493 0.82166 0.86161 1.90640 1.35791 1.68168 1.50894 1.22438 1.00352 0.84929 0.93377 0.86887 1.23017 0.99743 0.95793 0.84830 1.88115 1.75213 1.25690 1.41538 1.23623 0.99435 0.82694 1.00803 1.23624 1.01780 0.96149 0.84070 1.88170 1.75383 1.22127 1.43928 1.44156 1.65437 1.06168 1.16098 1.19137 1.14485 1.16990 0.85064 0.92363 1.25329 0.97421 1.00839 0.98173 1.70053 1.29464 1.38789 1.18167 0.86109 0.80046 0.77514 0.82063 1.20568 1.20878 1.22936 1.20572 0.94422 0.83286 0.94561 0.95334 0.92324 0.93480 0.93027 0.91440 0.94067 0.92698 0.90998 0.90239 0.92202 0.93474 0.90729 0.74856 0.87436 0.93610 0.92458 0.84195 0.84639 0.90312 0.94309 0.93269 0.98638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.93 7.99 71.98 0.58 -3.35 16 2 C -0.09 -3.06 0.78 -52.09 -0.04 -3.10 16 3 C -0.13 -3.70 8.49 71.98 0.61 -3.09 16 4 C -0.09 -2.56 4.71 30.63 0.14 -2.42 16 5 C -0.12 -3.64 5.03 30.67 0.15 -3.49 16 6 C 0.16 5.66 3.01 44.98 0.14 5.79 16 7 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 8 C 0.14 4.98 4.43 86.38 0.38 5.36 16 9 N -0.69 -25.17 3.85 -463.06 -1.78 -26.95 16 10 C 0.52 19.76 7.18 87.66 0.63 20.39 16 11 O -0.57 -25.84 16.51 15.90 0.26 -25.58 16 12 C 0.05 1.67 3.25 29.89 0.10 1.77 16 13 H 0.11 3.18 8.14 -2.39 -0.02 3.17 16 14 C 0.04 1.55 6.05 72.03 0.44 1.99 16 15 O -0.39 -12.40 10.84 -136.00 -1.47 -13.87 16 16 C 0.01 0.24 7.05 72.03 0.51 0.75 16 17 C 0.02 0.43 7.05 72.03 0.51 0.94 16 18 O -0.38 -12.25 10.03 -122.90 -1.23 -13.48 16 19 N -0.59 -25.29 2.42 -675.25 -1.63 -26.92 16 20 C -0.23 -10.71 6.94 84.03 0.58 -10.13 16 21 H 0.06 2.90 5.92 -2.91 -0.02 2.88 16 22 C -0.02 -1.04 5.04 84.86 0.43 -0.62 16 23 N -0.92 -48.85 11.14 21.65 0.24 -48.61 16 24 Si 0.91 42.79 28.53 68.60 1.96 44.75 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 26 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 27 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 28 C 0.20 8.42 3.92 86.36 0.34 8.75 16 29 H 0.03 1.01 8.14 -2.38 -0.02 1.00 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.74 5.98 -2.39 -0.01 1.72 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.91 8.14 -2.38 -0.02 1.90 16 38 H 0.06 1.85 6.34 -2.39 -0.02 1.84 16 39 H 0.05 1.88 7.40 -2.39 -0.02 1.86 16 40 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.41 15.57 7.34 -92.71 -0.68 14.89 16 42 H 0.11 4.10 7.24 -2.39 -0.02 4.08 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 49 H 0.05 2.47 6.19 -2.38 -0.01 2.46 16 50 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 Total: -1.00 -62.66 378.69 2.07 -60.59 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 0.24 Total: 30.52 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 5.49 Total: 19.55 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -3.17 Total: -102.48 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -2.45 Total: -52.93 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.96 Total: 44.75 kcal Total: -62.66 2.07 -60.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089608939.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.061 kcal (2) G-P(sol) polarization free energy of solvation -62.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds