Wall clock time and date at job start Tue Mar 31 2020 05:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46994 * 2 1 4 4 O 1.42896 * 109.47504 * 239.99977 * 2 1 3 5 5 C 1.53003 * 109.47154 * 119.99911 * 2 1 3 6 6 C 1.50698 * 109.46931 * 60.00219 * 5 2 1 7 7 O 1.21279 * 119.99808 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00023 * 180.02562 * 6 5 2 9 9 C 1.46919 * 120.63255 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.34238 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 O 1.42898 * 109.41880 * 178.67207 * 11 10 9 13 13 C 1.42900 * 114.00252 * 270.13180 * 12 11 10 14 14 C 1.53950 * 113.73977 * 248.73952 * 13 12 11 15 15 N 1.47811 * 86.03526 * 222.08655 * 14 13 12 16 16 C 1.36942 * 134.45663 * 204.64839 * 15 14 13 17 17 H 1.07993 * 120.00147 * 179.86346 * 16 15 14 18 18 C 1.38820 * 119.99732 * 359.86423 * 16 15 14 19 19 N 1.31621 * 120.00033 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99691 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47076 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46928 * 120.00021 * 20 18 16 23 23 H 1.48494 * 109.47111 * 239.99590 * 20 18 16 24 24 C 1.47577 * 91.05533 * 24.54887 * 15 14 13 25 25 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 26 26 C 1.46933 * 120.62741 * 0.02562 * 8 6 5 27 27 H 1.08996 * 109.47420 * 299.99946 * 1 2 3 28 28 H 1.09008 * 109.47080 * 60.00096 * 1 2 3 29 29 H 1.09003 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47240 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47523 * 299.99762 * 3 2 1 32 32 H 1.09005 * 109.47553 * 59.99951 * 3 2 1 33 33 H 0.96692 * 114.00362 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.46646 * 300.00179 * 5 2 1 35 35 H 1.09001 * 109.47188 * 180.02562 * 5 2 1 36 36 H 1.09002 * 109.58751 * 246.20189 * 9 8 6 37 37 H 1.08996 * 109.58750 * 6.48373 * 9 8 6 38 38 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 39 39 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 40 40 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 41 41 H 1.08994 * 112.94642 * 20.33216 * 13 12 11 42 42 H 1.09005 * 113.77098 * 336.34714 * 14 13 12 43 43 H 1.08995 * 113.77070 * 107.74480 * 14 13 12 44 44 H 0.96993 * 119.99596 * 180.02562 * 19 18 16 45 45 H 1.09000 * 113.77416 * 221.15573 * 24 15 14 46 46 H 1.09003 * 113.76723 * 89.75273 * 24 15 14 47 47 H 1.08994 * 109.50232 * 301.42239 * 25 11 10 48 48 H 1.09000 * 109.49784 * 181.32304 * 25 11 10 49 49 H 1.08994 * 109.58580 * 353.38021 * 26 8 6 50 50 H 1.09006 * 109.57831 * 113.65514 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 1.5377 -2.1420 1.2492 7 8 0.8408 -2.5388 0.3394 8 7 1.8628 -2.9718 2.2603 9 6 1.3803 -4.3594 2.2746 10 6 2.5785 -5.2996 2.4398 11 6 3.3685 -4.8927 3.6896 12 8 4.4703 -5.7853 3.8666 13 6 4.1675 -6.9314 4.6647 14 6 4.8744 -6.9385 6.0323 15 7 5.1196 -8.3747 5.7831 16 6 5.3448 -9.4624 6.5840 17 1 5.4979 -10.4358 6.1422 18 6 5.3763 -9.3136 7.9638 19 7 5.1902 -8.1270 8.5022 20 14 5.6842 -10.7972 9.0564 21 1 5.8629 -12.0053 8.2117 22 1 6.9105 -10.5719 9.8630 23 1 4.5246 -10.9935 9.9629 24 6 5.0218 -8.1663 4.3253 25 6 3.8913 -3.4640 3.5243 26 6 2.7057 -2.5054 3.3698 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 2.9703 -0.7114 -1.2330 34 1 1.6766 -0.2074 2.1392 35 1 3.1300 -0.7208 1.2495 36 1 0.6899 -4.4977 3.1067 37 1 0.8705 -4.5787 1.3365 38 1 2.2245 -6.3249 2.5468 39 1 3.2222 -5.2261 1.5632 40 1 2.7172 -4.9424 4.5622 41 1 3.0991 -7.1391 4.7219 42 1 5.7825 -6.3363 6.0607 43 1 4.2076 -6.7448 6.8725 44 1 5.2126 -8.0231 9.4663 45 1 4.4725 -8.9510 3.8052 46 1 5.9733 -7.9254 3.8512 47 1 4.5227 -3.4079 2.6376 48 1 4.4722 -3.1851 4.4034 49 1 3.0724 -1.5021 3.1533 50 1 2.1223 -2.4904 4.2905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093530820.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:45 Heat of formation + Delta-G solvation = -76.568892 kcal Electronic energy + Delta-G solvation = -28576.316583 eV Core-core repulsion = 24605.571667 eV Total energy + Delta-G solvation = -3970.744916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66814 -39.01795 -38.08114 -37.03784 -35.43435 -33.08454 -32.27148 -31.66780 -31.29149 -28.60925 -27.61483 -27.44412 -24.90444 -24.70540 -23.51390 -22.82532 -21.39446 -20.55175 -19.54598 -19.07959 -17.59513 -17.04539 -16.84312 -16.35231 -16.00009 -15.60778 -15.12169 -15.02939 -14.83629 -14.46928 -14.32623 -13.91453 -13.80825 -13.76167 -13.36261 -12.88594 -12.71924 -12.62573 -12.51844 -12.42994 -12.14668 -11.95219 -11.92459 -11.81257 -11.66617 -11.40974 -11.20659 -11.15953 -11.04707 -10.90962 -10.71001 -10.49525 -10.38828 -10.21059 -9.98304 -9.68943 -9.56286 -8.84716 -8.82197 -8.73536 -6.91880 -5.80073 -3.12788 2.46277 2.74468 3.36972 3.42166 3.45016 3.89877 3.93152 4.21650 4.30634 4.45696 4.51520 4.61677 4.70104 4.83153 4.90251 4.98584 5.07009 5.10322 5.11556 5.20185 5.23758 5.29594 5.36035 5.42615 5.47200 5.50715 5.58970 5.60027 5.66549 5.67972 5.71874 5.77296 5.79489 5.90154 6.03737 6.17797 6.20059 6.37536 6.41077 6.61649 6.63839 7.08668 7.19993 7.21336 7.45614 7.50610 7.85675 7.95332 8.04175 9.01490 9.67218 10.56039 11.37319 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.037817 B = 0.002037 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.224500 B =13740.513075 C =13925.838501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.144 3.856 3 C -0.179 4.179 4 O -0.543 6.543 5 C -0.171 4.171 6 C 0.516 3.484 7 O -0.520 6.520 8 N -0.615 5.615 9 C 0.114 3.886 10 C -0.155 4.155 11 C 0.091 3.909 12 O -0.374 6.374 13 C 0.035 3.965 14 C 0.149 3.851 15 N -0.609 5.609 16 C -0.220 4.220 17 H 0.082 0.918 18 C -0.010 4.010 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.121 3.879 25 C -0.132 4.132 26 C 0.109 3.891 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.369 0.631 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.034 0.966 43 H 0.072 0.928 44 H 0.253 0.747 45 H 0.046 0.954 46 H 0.042 0.958 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 19.877 -13.963 25.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.103 3.897 3 C -0.237 4.237 4 O -0.348 6.348 5 C -0.211 4.211 6 C 0.304 3.696 7 O -0.396 6.396 8 N -0.350 5.350 9 C -0.008 4.008 10 C -0.193 4.193 11 C 0.033 3.967 12 O -0.291 6.291 13 C -0.024 4.024 14 C 0.024 3.976 15 N -0.338 5.338 16 C -0.348 4.348 17 H 0.100 0.900 18 C -0.206 4.206 19 N -0.568 5.568 20 Si 0.744 3.256 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.005 4.005 25 C -0.170 4.170 26 C -0.014 4.014 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.215 0.785 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.051 0.949 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.092 0.908 48 H 0.104 0.896 49 H 0.105 0.895 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.302 19.465 -14.351 25.569 hybrid contribution 0.890 -0.719 1.151 1.623 sum -7.412 18.746 -13.201 24.096 Atomic orbital electron populations 1.21989 0.92340 1.05146 1.01465 1.20905 0.95620 0.89577 0.83585 1.22527 1.01427 0.96633 1.03084 1.86712 1.25766 1.79351 1.42951 1.22531 1.02821 0.94130 1.01616 1.20445 0.80504 0.87407 0.81243 1.90674 1.37401 1.76672 1.34814 1.48227 1.51544 1.12286 1.22958 1.21566 0.96035 0.79806 1.03432 1.22514 0.97283 0.99636 0.99906 1.22006 0.88881 0.89609 0.96221 1.87946 1.34798 1.34444 1.71946 1.25027 0.98760 0.85103 0.93491 1.22745 0.96613 0.85110 0.93154 1.45700 1.84068 1.04230 0.99764 1.19049 1.42104 0.86290 0.87318 0.90004 1.24820 1.02286 0.97059 0.96435 1.69837 1.55773 1.20990 1.10228 0.86010 0.77486 0.81512 0.80551 1.20385 1.21695 1.21661 1.22729 0.96620 0.93070 0.88087 1.21980 0.97528 0.93684 1.03795 1.21785 0.91700 0.98104 0.89792 0.92062 0.92293 0.89053 0.92263 0.91428 0.91506 0.78524 0.88159 0.88658 0.91459 0.88807 0.90305 0.90878 0.92055 0.90220 0.94853 0.90964 0.93659 0.93616 0.94017 0.90802 0.89591 0.89480 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.52 37.16 0.32 -1.06 16 2 C 0.14 1.14 0.98 -90.62 -0.09 1.05 16 3 C -0.18 -0.97 8.81 37.16 0.33 -0.64 16 4 O -0.54 -5.40 11.88 -53.50 -0.64 -6.04 16 5 C -0.17 -1.18 3.30 -27.88 -0.09 -1.27 16 6 C 0.52 5.45 7.26 -10.99 -0.08 5.37 16 7 O -0.52 -7.39 12.37 -12.71 -0.16 -7.55 16 8 N -0.62 -6.04 2.97 -172.74 -0.51 -6.55 16 9 C 0.11 1.22 6.42 -3.71 -0.02 1.19 16 10 C -0.15 -1.82 5.72 -26.45 -0.15 -1.97 16 11 C 0.09 1.17 2.45 -26.53 -0.07 1.11 16 12 O -0.37 -6.33 10.01 -35.23 -0.35 -6.68 16 13 C 0.03 0.67 4.29 -25.80 -0.11 0.56 16 14 C 0.15 3.58 7.36 -2.84 -0.02 3.56 16 15 N -0.61 -15.98 3.70 -177.97 -0.66 -16.63 16 16 C -0.22 -6.24 10.70 -15.05 -0.16 -6.41 16 17 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.92 -27.33 11.39 55.49 0.63 -26.70 16 20 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.12 2.58 8.77 -2.97 -0.03 2.55 16 25 C -0.13 -1.33 5.73 -26.59 -0.15 -1.48 16 26 C 0.11 0.85 6.34 -3.68 -0.02 0.82 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.09 1.09 5.51 -51.93 -0.29 0.80 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.37 2.32 9.04 45.56 0.41 2.73 16 34 H 0.10 0.51 7.94 -51.93 -0.41 0.09 16 35 H 0.10 0.50 7.69 -51.93 -0.40 0.10 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.11 7.00 -51.93 -0.36 0.74 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.79 7.74 -51.93 -0.40 0.39 16 41 H 0.08 1.46 7.80 -51.93 -0.41 1.05 16 42 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.87 7.17 -51.93 -0.37 1.50 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.09 0.46 5.93 -51.93 -0.31 0.15 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 391.34 15.07 5.90 5.90 Total: -1.00 -34.69 391.34 -9.26 -43.96 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -8.00 Total: 0.19 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -0.45 Total: 3.01 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.54 Total: -49.89 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -1.15 Total: -20.26 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.69 -9.26 -43.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093530820.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.614 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds