Wall clock time and date at job start Tue Mar 31 2020 05:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46994 * 2 1 4 4 O 1.42896 * 109.47504 * 239.99977 * 2 1 3 5 5 C 1.53003 * 109.47154 * 119.99911 * 2 1 3 6 6 C 1.50698 * 109.46931 * 60.00219 * 5 2 1 7 7 O 1.21279 * 119.99808 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00023 * 180.02562 * 6 5 2 9 9 C 1.46919 * 120.63255 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.34238 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 O 1.42898 * 109.41880 * 178.67207 * 11 10 9 13 13 C 1.42900 * 114.00252 * 270.13180 * 12 11 10 14 14 C 1.53950 * 113.73977 * 248.73952 * 13 12 11 15 15 N 1.47811 * 86.03526 * 222.08655 * 14 13 12 16 16 C 1.36942 * 134.45663 * 204.64839 * 15 14 13 17 17 H 1.07993 * 120.00147 * 179.86346 * 16 15 14 18 18 C 1.38820 * 119.99732 * 359.86423 * 16 15 14 19 19 N 1.31621 * 120.00033 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99691 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47076 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46928 * 120.00021 * 20 18 16 23 23 H 1.48494 * 109.47111 * 239.99590 * 20 18 16 24 24 C 1.47577 * 91.05533 * 24.54887 * 15 14 13 25 25 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 26 26 C 1.46933 * 120.62741 * 0.02562 * 8 6 5 27 27 H 1.08996 * 109.47420 * 299.99946 * 1 2 3 28 28 H 1.09008 * 109.47080 * 60.00096 * 1 2 3 29 29 H 1.09003 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47240 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47523 * 299.99762 * 3 2 1 32 32 H 1.09005 * 109.47553 * 59.99951 * 3 2 1 33 33 H 0.96692 * 114.00362 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.46646 * 300.00179 * 5 2 1 35 35 H 1.09001 * 109.47188 * 180.02562 * 5 2 1 36 36 H 1.09002 * 109.58751 * 246.20189 * 9 8 6 37 37 H 1.08996 * 109.58750 * 6.48373 * 9 8 6 38 38 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 39 39 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 40 40 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 41 41 H 1.08994 * 112.94642 * 20.33216 * 13 12 11 42 42 H 1.09005 * 113.77098 * 336.34714 * 14 13 12 43 43 H 1.08995 * 113.77070 * 107.74480 * 14 13 12 44 44 H 0.96993 * 119.99596 * 180.02562 * 19 18 16 45 45 H 1.09000 * 113.77416 * 221.15573 * 24 15 14 46 46 H 1.09003 * 113.76723 * 89.75273 * 24 15 14 47 47 H 1.08994 * 109.50232 * 301.42239 * 25 11 10 48 48 H 1.09000 * 109.49784 * 181.32304 * 25 11 10 49 49 H 1.08994 * 109.58580 * 353.38021 * 26 8 6 50 50 H 1.09006 * 109.57831 * 113.65514 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 1.5377 -2.1420 1.2492 7 8 0.8408 -2.5388 0.3394 8 7 1.8628 -2.9718 2.2603 9 6 1.3803 -4.3594 2.2746 10 6 2.5785 -5.2996 2.4398 11 6 3.3685 -4.8927 3.6896 12 8 4.4703 -5.7853 3.8666 13 6 4.1675 -6.9314 4.6647 14 6 4.8744 -6.9385 6.0323 15 7 5.1196 -8.3747 5.7831 16 6 5.3448 -9.4624 6.5840 17 1 5.4979 -10.4358 6.1422 18 6 5.3763 -9.3136 7.9638 19 7 5.1902 -8.1270 8.5022 20 14 5.6842 -10.7972 9.0564 21 1 5.8629 -12.0053 8.2117 22 1 6.9105 -10.5719 9.8630 23 1 4.5246 -10.9935 9.9629 24 6 5.0218 -8.1663 4.3253 25 6 3.8913 -3.4640 3.5243 26 6 2.7057 -2.5054 3.3698 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 2.9703 -0.7114 -1.2330 34 1 1.6766 -0.2074 2.1392 35 1 3.1300 -0.7208 1.2495 36 1 0.6899 -4.4977 3.1067 37 1 0.8705 -4.5787 1.3365 38 1 2.2245 -6.3249 2.5468 39 1 3.2222 -5.2261 1.5632 40 1 2.7172 -4.9424 4.5622 41 1 3.0991 -7.1391 4.7219 42 1 5.7825 -6.3363 6.0607 43 1 4.2076 -6.7448 6.8725 44 1 5.2126 -8.0231 9.4663 45 1 4.4725 -8.9510 3.8052 46 1 5.9733 -7.9254 3.8512 47 1 4.5227 -3.4079 2.6376 48 1 4.4722 -3.1851 4.4034 49 1 3.0724 -1.5021 3.1533 50 1 2.1223 -2.4904 4.2905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093530820.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:44 Heat of formation + Delta-G solvation = -100.551678 kcal Electronic energy + Delta-G solvation = -28577.356555 eV Core-core repulsion = 24605.571667 eV Total energy + Delta-G solvation = -3971.784888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.45539 -40.30476 -39.12147 -38.07065 -36.70197 -34.17832 -33.73065 -32.75706 -32.15845 -29.51932 -29.13618 -28.14719 -26.62542 -25.82492 -24.73295 -24.21186 -22.22304 -21.30749 -21.16976 -19.95099 -18.83298 -18.41345 -17.85174 -17.58679 -17.00425 -16.69465 -16.34074 -15.99892 -15.76551 -15.73451 -15.40888 -15.13403 -14.87996 -14.73042 -14.45370 -14.27463 -13.74515 -13.45442 -13.33853 -13.22413 -13.16376 -13.06883 -12.98035 -12.85829 -12.81498 -12.71963 -12.67320 -12.39572 -12.24959 -12.22925 -11.93144 -11.75763 -11.61844 -11.46667 -11.41406 -10.97306 -10.89936 -10.48087 -10.21549 -9.64921 -8.98625 -7.94072 -5.29087 1.45414 1.46759 1.57312 1.70754 2.01456 2.41126 2.73352 3.25879 3.36528 3.43666 3.58607 3.71055 3.76474 3.83814 3.94700 4.04229 4.07273 4.13730 4.16663 4.24483 4.32757 4.43189 4.52086 4.59703 4.63775 4.67531 4.75249 4.79272 4.79951 4.82881 4.88929 4.93569 4.94722 4.97955 5.08356 5.12661 5.17367 5.20103 5.22801 5.32474 5.36712 5.46972 5.47638 5.59579 5.87341 6.45129 6.46236 6.88105 6.98611 7.28367 7.55694 8.50723 9.23281 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.037817 B = 0.002037 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.224500 B =13740.513075 C =13925.838501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 C -0.171 4.171 4 O -0.573 6.573 5 C -0.164 4.164 6 C 0.509 3.491 7 O -0.564 6.564 8 N -0.616 5.616 9 C 0.117 3.883 10 C -0.145 4.145 11 C 0.082 3.918 12 O -0.382 6.382 13 C 0.071 3.929 14 C 0.147 3.853 15 N -0.639 5.639 16 C -0.236 4.236 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.953 5.953 20 Si 0.984 3.016 21 H -0.264 1.264 22 H -0.292 1.292 23 H -0.289 1.289 24 C 0.119 3.881 25 C -0.127 4.127 26 C 0.112 3.888 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.381 0.619 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.016 0.984 43 H 0.046 0.954 44 H 0.250 0.750 45 H 0.064 0.936 46 H 0.045 0.955 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.121 0.879 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.301 21.173 -13.863 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.098 3.902 3 C -0.229 4.229 4 O -0.380 6.380 5 C -0.204 4.204 6 C 0.299 3.701 7 O -0.443 6.443 8 N -0.350 5.350 9 C -0.006 4.006 10 C -0.184 4.184 11 C 0.024 3.976 12 O -0.300 6.300 13 C 0.012 3.988 14 C 0.021 3.979 15 N -0.368 5.368 16 C -0.364 4.364 17 H 0.104 0.896 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.811 3.189 21 H -0.189 1.189 22 H -0.219 1.219 23 H -0.215 1.215 24 C -0.006 4.006 25 C -0.165 4.165 26 C -0.010 4.010 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.229 0.771 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.111 0.889 42 H 0.034 0.966 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.108 0.892 49 H 0.139 0.861 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.095 20.776 -14.275 26.475 hybrid contribution 0.822 -1.085 1.037 1.711 sum -7.273 19.690 -13.238 24.816 Atomic orbital electron populations 1.21993 0.93830 1.03142 1.02150 1.21040 0.94686 0.91061 0.83432 1.22443 1.02365 0.94604 1.03456 1.86677 1.27140 1.79978 1.44201 1.22579 1.04215 0.91385 1.02196 1.21157 0.79716 0.88775 0.80422 1.90673 1.39385 1.77719 1.36483 1.48337 1.51491 1.11733 1.23447 1.21438 0.95554 0.80532 1.03046 1.22393 0.97314 0.99842 0.98820 1.22345 0.88133 0.90417 0.96702 1.87929 1.36833 1.34202 1.70990 1.24367 0.98460 0.85337 0.90613 1.22664 0.95928 0.84244 0.95078 1.46079 1.84212 1.04526 1.01986 1.19455 1.41470 0.87358 0.88125 0.89556 1.25712 1.02632 0.99949 0.97834 1.70019 1.57010 1.23003 1.10144 0.84935 0.76888 0.78594 0.78440 1.18859 1.21909 1.21537 1.22866 0.97324 0.94578 0.85819 1.21972 0.98569 0.92163 1.03818 1.21954 0.90537 0.98853 0.89624 0.90005 0.93025 0.92282 0.90698 0.92304 0.89906 0.77062 0.85404 0.86145 0.90414 0.90347 0.90639 0.91939 0.91830 0.88870 0.96625 0.93534 0.94081 0.91774 0.93750 0.91095 0.89239 0.86053 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.52 71.98 0.61 -2.06 16 2 C 0.14 1.92 0.98 -10.79 -0.01 1.90 16 3 C -0.17 -1.35 8.81 71.98 0.63 -0.72 16 4 O -0.57 -10.98 11.88 -131.51 -1.56 -12.54 16 5 C -0.16 -1.73 3.30 29.85 0.10 -1.63 16 6 C 0.51 9.95 7.26 87.66 0.64 10.58 16 7 O -0.56 -16.14 12.37 14.44 0.18 -15.96 16 8 N -0.62 -10.83 2.97 -818.81 -2.43 -13.27 16 9 C 0.12 2.40 6.42 86.36 0.55 2.95 16 10 C -0.15 -3.27 5.72 30.78 0.18 -3.09 16 11 C 0.08 1.98 2.45 30.72 0.08 2.05 16 12 O -0.38 -12.51 10.01 -148.98 -1.49 -14.00 16 13 C 0.07 2.69 4.29 31.26 0.13 2.83 16 14 C 0.15 7.14 7.36 86.44 0.64 7.78 16 15 N -0.64 -33.75 3.70 -720.79 -2.67 -36.42 16 16 C -0.24 -13.44 10.70 84.03 0.90 -12.54 16 17 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 18 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 19 N -0.95 -57.62 11.39 21.65 0.25 -57.37 16 20 Si 0.98 45.68 29.55 68.60 2.03 47.71 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 24 C 0.12 4.99 8.77 86.49 0.76 5.75 16 25 C -0.13 -2.26 5.73 30.69 0.18 -2.09 16 26 C 0.11 1.36 6.34 86.38 0.55 1.91 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.06 1.44 5.51 -2.39 -0.01 1.43 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.38 4.36 9.04 -74.06 -0.67 3.69 16 34 H 0.13 0.68 7.94 -2.39 -0.02 0.66 16 35 H 0.12 0.70 7.69 -2.39 -0.02 0.69 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.87 7.00 -2.39 -0.02 1.86 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.54 7.74 -2.39 -0.02 1.52 16 41 H 0.09 3.30 7.80 -2.39 -0.02 3.28 16 42 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.05 2.48 7.17 -2.39 -0.02 2.46 16 44 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.12 0.68 5.93 -2.39 -0.01 0.67 16 50 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -77.51 391.34 0.94 -76.57 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.25 Total: 15.12 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.40 Total: 10.16 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -4.86 Total: -107.05 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -2.87 Total: -42.51 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -77.51 0.94 -76.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093530820.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.983 kcal (2) G-P(sol) polarization free energy of solvation -77.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds