Wall clock time and date at job start Tue Mar 31 2020 05:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47246 * 269.99908 * 3 2 1 5 5 H 1.48497 * 109.46946 * 30.00178 * 3 2 1 6 6 H 1.48508 * 109.47060 * 149.99945 * 3 2 1 7 7 C 1.38809 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00320 * 197.35850 * 7 2 1 9 9 N 1.36941 * 119.99704 * 17.35954 * 7 2 1 10 10 C 1.46931 * 120.62937 * 207.69875 * 9 7 2 11 11 C 1.53166 * 108.76581 * 233.58846 * 10 9 7 12 12 C 1.53037 * 109.32636 * 305.35257 * 11 10 9 13 13 H 1.09004 * 109.46464 * 181.38561 * 12 11 10 14 14 N 1.46500 * 109.46004 * 301.36201 * 12 11 10 15 15 C 1.34777 * 119.99919 * 275.02170 * 14 12 11 16 16 O 1.21282 * 119.99834 * 0.02562 * 15 14 12 17 17 C 1.50704 * 120.00165 * 179.97438 * 15 14 12 18 18 C 1.53000 * 109.47160 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47009 * 180.02562 * 18 17 15 20 20 C 1.53176 * 109.53983 * 294.55177 * 19 18 17 21 21 C 1.53095 * 109.16400 * 183.15509 * 20 19 18 22 22 O 1.42905 * 109.41251 * 57.60833 * 21 20 19 23 23 C 1.42904 * 114.09631 * 298.84292 * 22 21 20 24 24 C 1.53087 * 109.41659 * 61.16202 * 23 22 21 25 25 C 1.53038 * 109.52787 * 61.37449 * 12 11 10 26 26 H 1.08997 * 109.50135 * 58.59129 * 25 12 11 27 27 O 1.42900 * 109.49836 * 178.65792 * 25 12 11 28 28 C 1.46917 * 120.63395 * 27.67382 * 9 7 2 29 29 H 0.96997 * 119.99554 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.58375 * 353.36834 * 10 9 7 31 31 H 1.08996 * 109.59248 * 113.79697 * 10 9 7 32 32 H 1.08998 * 109.48196 * 185.40337 * 11 10 9 33 33 H 1.08999 * 109.50578 * 65.31893 * 11 10 9 34 34 H 0.96998 * 120.00201 * 95.02645 * 14 12 11 35 35 H 1.08996 * 109.46962 * 300.00845 * 17 15 14 36 36 H 1.08996 * 109.46543 * 60.00504 * 17 15 14 37 37 H 1.09007 * 109.46872 * 300.00041 * 18 17 15 38 38 H 1.08994 * 109.47138 * 60.00090 * 18 17 15 39 39 H 1.08994 * 109.54606 * 54.81706 * 19 18 17 40 40 H 1.09012 * 109.52466 * 303.06128 * 20 19 18 41 41 H 1.08997 * 109.52546 * 63.24459 * 20 19 18 42 42 H 1.08993 * 109.47635 * 297.62731 * 21 20 19 43 43 H 1.09003 * 109.47662 * 177.58845 * 21 20 19 44 44 H 1.09004 * 109.47950 * 301.17590 * 23 22 21 45 45 H 1.09001 * 109.47371 * 181.14102 * 23 22 21 46 46 H 1.08993 * 109.52531 * 182.48337 * 24 23 22 47 47 H 1.08997 * 109.52478 * 62.28907 * 24 23 22 48 48 H 0.96705 * 113.99757 * 179.97438 * 27 25 12 49 49 H 1.09000 * 109.58373 * 6.62519 * 28 9 7 50 50 H 1.09006 * 109.70440 * 246.27403 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2796 9 7 1.3723 -2.3612 -0.3528 10 6 1.8191 -3.6546 0.1822 11 6 2.0740 -4.6101 -0.9874 12 6 0.8184 -4.6906 -1.8586 13 1 0.9889 -5.3889 -2.6780 14 7 -0.3095 -5.1557 -1.0475 15 6 -0.5083 -6.4761 -0.8641 16 8 0.2467 -7.2791 -1.3702 17 6 -1.6682 -6.9547 -0.0293 18 6 -1.6651 -8.4839 0.0190 19 6 -2.8430 -8.9698 0.8660 20 6 -2.6453 -8.5285 2.3194 21 6 -3.7872 -9.0857 3.1735 22 8 -3.8176 -10.5095 3.0555 23 6 -4.0469 -10.9799 1.7257 24 6 -2.9155 -10.4990 0.8135 25 6 0.5006 -3.3057 -2.4270 26 1 1.3492 -2.9482 -3.0102 27 8 -0.6537 -3.3876 -3.2654 28 6 0.2278 -2.3350 -1.2736 29 1 -0.4849 0.8401 -0.0004 30 1 2.7399 -3.5171 0.7491 31 1 1.0468 -4.0684 0.8306 32 1 2.3132 -5.6011 -0.6017 33 1 2.9078 -4.2405 -1.5842 34 1 -0.9131 -4.5135 -0.6425 35 1 -1.5753 -6.5593 0.9821 36 1 -2.6018 -6.6067 -0.4712 37 1 -1.7577 -8.8795 -0.9925 38 1 -0.7314 -8.8316 0.4610 39 1 -3.7698 -8.5472 0.4782 40 1 -1.6937 -8.9102 2.6898 41 1 -2.6478 -7.4399 2.3732 42 1 -4.7345 -8.6719 2.8282 43 1 -3.6286 -8.8106 4.2163 44 1 -4.9978 -10.5910 1.3615 45 1 -4.0756 -12.0695 1.7256 46 1 -3.1113 -10.8194 -0.2096 47 1 -1.9694 -10.9203 1.1535 48 1 -0.9136 -2.5440 -3.6604 49 1 0.0986 -1.3268 -1.6673 50 1 -0.6758 -2.6396 -0.7455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100026467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:29 Heat of formation + Delta-G solvation = -133.738418 kcal Electronic energy + Delta-G solvation = -29000.156467 eV Core-core repulsion = 25026.932494 eV Total energy + Delta-G solvation = -3973.223973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.01984 -39.49326 -37.91767 -35.55299 -35.30197 -34.04825 -32.11392 -31.45927 -31.00988 -29.56717 -28.88311 -26.18642 -25.20001 -23.79915 -22.68408 -22.17901 -21.73274 -20.34919 -20.10155 -18.71572 -17.22231 -16.91030 -16.57776 -16.27460 -16.13510 -15.69344 -15.32577 -15.01267 -14.93839 -14.53859 -14.21183 -14.12755 -13.79501 -13.61163 -13.52713 -13.07603 -12.70186 -12.49572 -12.33400 -12.21633 -12.06145 -11.85504 -11.68405 -11.56952 -11.34275 -11.09832 -11.04228 -10.94702 -10.87702 -10.50636 -10.47780 -10.45755 -10.23529 -10.03594 -9.73813 -9.69410 -9.46300 -9.33808 -8.67969 -8.53781 -6.82905 -5.93211 -3.36428 2.97891 3.29287 3.37300 3.38085 3.53700 3.64893 4.36536 4.44222 4.49594 4.57364 4.62372 4.76603 4.93483 5.01527 5.10535 5.17187 5.21595 5.23358 5.30696 5.37747 5.43052 5.45271 5.49978 5.57186 5.64117 5.69855 5.72287 5.80466 5.81181 5.90201 5.90902 5.96683 6.01497 6.14943 6.23298 6.27866 6.43186 6.43898 6.68526 6.78257 6.94939 6.97039 7.02294 7.37007 7.67177 7.92376 8.06391 8.30342 8.59203 9.05510 9.68274 10.23889 11.14864 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.002579 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.122875 B =10855.185142 C =11550.366072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.146 3.854 11 C -0.144 4.144 12 C 0.165 3.835 13 H 0.077 0.923 14 N -0.706 5.706 15 C 0.511 3.489 16 O -0.556 6.556 17 C -0.142 4.142 18 C -0.094 4.094 19 C -0.091 4.091 20 C -0.155 4.155 21 C 0.060 3.940 22 O -0.386 6.386 23 C 0.060 3.940 24 C -0.151 4.151 25 C 0.066 3.934 26 H 0.061 0.939 27 O -0.573 6.573 28 C 0.146 3.854 29 H 0.255 0.745 30 H 0.056 0.944 31 H 0.020 0.980 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.404 0.596 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.093 0.907 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.375 0.625 49 H 0.092 0.908 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.868 -15.349 0.641 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.020 3.980 11 C -0.184 4.184 12 C 0.060 3.940 13 H 0.095 0.905 14 N -0.357 5.357 15 C 0.298 3.702 16 O -0.434 6.434 17 C -0.182 4.182 18 C -0.132 4.132 19 C -0.109 4.109 20 C -0.192 4.192 21 C -0.017 4.017 22 O -0.305 6.305 23 C -0.016 4.016 24 C -0.189 4.189 25 C 0.005 3.995 26 H 0.078 0.922 27 O -0.378 6.378 28 C 0.020 3.980 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.240 0.760 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.067 0.933 45 H 0.109 0.891 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.222 0.778 49 H 0.110 0.890 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.369 -16.507 0.627 18.088 hybrid contribution 0.089 2.168 -0.250 2.184 sum -7.280 -14.339 0.377 16.086 Atomic orbital electron populations 1.70016 1.05245 1.25698 1.53746 1.25053 0.95341 0.98529 1.00673 0.86261 0.79182 0.83422 0.77745 1.21392 1.21706 1.20351 1.19222 0.92892 0.84656 1.41627 0.91378 1.43970 1.35656 1.01765 1.49812 1.20911 0.97855 0.86357 0.92884 1.22389 0.96570 1.00225 0.99255 1.20776 0.86060 0.94369 0.92780 0.90516 1.46034 1.30590 1.06881 1.52233 1.20605 0.86195 0.82438 0.80994 1.90651 1.47965 1.54268 1.50565 1.21715 0.97788 0.97762 1.00974 1.21329 0.98122 0.93246 1.00488 1.21244 0.99201 0.95214 0.95263 1.22331 1.00006 1.01644 0.95266 1.22602 0.97438 0.80995 1.00647 1.87925 1.93181 1.21476 1.27892 1.22578 0.96791 0.99459 0.82800 1.22237 1.00242 0.95964 1.00424 1.22942 0.87681 0.95929 0.92902 0.92152 1.86412 1.48296 1.36646 1.66401 1.21384 0.89458 0.98603 0.88588 0.93519 0.92518 0.96220 0.91777 0.91245 0.76032 0.88934 0.89171 0.91169 0.91101 0.90996 0.90814 0.90408 0.93249 0.88914 0.93318 0.89065 0.90798 0.90871 0.77782 0.88977 0.95779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 11.19 55.49 0.62 -23.92 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 20.74 29.59 -169.99 -5.03 15.71 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.25 -6.60 9.59 -15.06 -0.14 -6.75 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -13.69 2.99 -172.33 -0.52 -14.20 16 10 C 0.15 2.94 6.26 -3.72 -0.02 2.91 16 11 C -0.14 -2.57 5.77 -26.63 -0.15 -2.73 16 12 C 0.16 2.94 2.47 -67.89 -0.17 2.77 16 13 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 14 N -0.71 -11.58 4.15 -53.76 -0.22 -11.80 16 15 C 0.51 8.06 7.79 -10.98 -0.09 7.97 16 16 O -0.56 -10.49 15.64 5.56 0.09 -10.40 16 17 C -0.14 -1.64 5.47 -27.88 -0.15 -1.79 16 18 C -0.09 -1.02 3.98 -26.73 -0.11 -1.12 16 19 C -0.09 -0.80 2.27 -90.44 -0.21 -1.00 16 20 C -0.15 -1.35 5.10 -26.59 -0.14 -1.48 16 21 C 0.06 0.51 6.84 37.21 0.25 0.76 16 22 O -0.39 -3.97 10.77 -35.23 -0.38 -4.35 16 23 C 0.06 0.49 6.84 37.20 0.25 0.74 16 24 C -0.15 -1.25 5.42 -26.59 -0.14 -1.39 16 25 C 0.07 1.21 3.36 -26.61 -0.09 1.12 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 O -0.57 -9.64 13.21 -35.23 -0.47 -10.10 16 28 C 0.15 3.16 4.64 -3.71 -0.02 3.14 16 29 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 31 H 0.02 0.40 7.74 -51.93 -0.40 0.00 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.40 6.54 6.87 -40.82 -0.28 6.26 16 35 H 0.09 0.96 6.66 -51.93 -0.35 0.62 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 38 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 41 H 0.08 0.63 6.75 -51.93 -0.35 0.28 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.38 5.04 9.08 45.56 0.41 5.46 16 49 H 0.09 2.23 6.04 -51.93 -0.31 1.92 16 50 H 0.02 0.54 6.65 -51.93 -0.35 0.20 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -30.60 384.96 -9.00 -39.59 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -7.89 Total: 10.51 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -1.00 Total: 3.15 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.12 Total: -49.92 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.76 Total: -24.85 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.60 -9.00 -39.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100026467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.145 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds