Wall clock time and date at job start Tue Mar 31 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47246 * 269.99908 * 3 2 1 5 5 H 1.48497 * 109.46946 * 30.00178 * 3 2 1 6 6 H 1.48508 * 109.47060 * 149.99945 * 3 2 1 7 7 C 1.38809 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00320 * 197.35850 * 7 2 1 9 9 N 1.36941 * 119.99704 * 17.35954 * 7 2 1 10 10 C 1.46931 * 120.62937 * 207.69875 * 9 7 2 11 11 C 1.53166 * 108.76581 * 233.58846 * 10 9 7 12 12 C 1.53037 * 109.32636 * 305.35257 * 11 10 9 13 13 H 1.09004 * 109.46464 * 181.38561 * 12 11 10 14 14 N 1.46500 * 109.46004 * 301.36201 * 12 11 10 15 15 C 1.34777 * 119.99919 * 275.02170 * 14 12 11 16 16 O 1.21282 * 119.99834 * 0.02562 * 15 14 12 17 17 C 1.50704 * 120.00165 * 179.97438 * 15 14 12 18 18 C 1.53000 * 109.47160 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47009 * 180.02562 * 18 17 15 20 20 C 1.53176 * 109.53983 * 294.55177 * 19 18 17 21 21 C 1.53095 * 109.16400 * 183.15509 * 20 19 18 22 22 O 1.42905 * 109.41251 * 57.60833 * 21 20 19 23 23 C 1.42904 * 114.09631 * 298.84292 * 22 21 20 24 24 C 1.53087 * 109.41659 * 61.16202 * 23 22 21 25 25 C 1.53038 * 109.52787 * 61.37449 * 12 11 10 26 26 H 1.08997 * 109.50135 * 58.59129 * 25 12 11 27 27 O 1.42900 * 109.49836 * 178.65792 * 25 12 11 28 28 C 1.46917 * 120.63395 * 27.67382 * 9 7 2 29 29 H 0.96997 * 119.99554 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.58375 * 353.36834 * 10 9 7 31 31 H 1.08996 * 109.59248 * 113.79697 * 10 9 7 32 32 H 1.08998 * 109.48196 * 185.40337 * 11 10 9 33 33 H 1.08999 * 109.50578 * 65.31893 * 11 10 9 34 34 H 0.96998 * 120.00201 * 95.02645 * 14 12 11 35 35 H 1.08996 * 109.46962 * 300.00845 * 17 15 14 36 36 H 1.08996 * 109.46543 * 60.00504 * 17 15 14 37 37 H 1.09007 * 109.46872 * 300.00041 * 18 17 15 38 38 H 1.08994 * 109.47138 * 60.00090 * 18 17 15 39 39 H 1.08994 * 109.54606 * 54.81706 * 19 18 17 40 40 H 1.09012 * 109.52466 * 303.06128 * 20 19 18 41 41 H 1.08997 * 109.52546 * 63.24459 * 20 19 18 42 42 H 1.08993 * 109.47635 * 297.62731 * 21 20 19 43 43 H 1.09003 * 109.47662 * 177.58845 * 21 20 19 44 44 H 1.09004 * 109.47950 * 301.17590 * 23 22 21 45 45 H 1.09001 * 109.47371 * 181.14102 * 23 22 21 46 46 H 1.08993 * 109.52531 * 182.48337 * 24 23 22 47 47 H 1.08997 * 109.52478 * 62.28907 * 24 23 22 48 48 H 0.96705 * 113.99757 * 179.97438 * 27 25 12 49 49 H 1.09000 * 109.58373 * 6.62519 * 28 9 7 50 50 H 1.09006 * 109.70440 * 246.27403 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2796 9 7 1.3723 -2.3612 -0.3528 10 6 1.8191 -3.6546 0.1822 11 6 2.0740 -4.6101 -0.9874 12 6 0.8184 -4.6906 -1.8586 13 1 0.9889 -5.3889 -2.6780 14 7 -0.3095 -5.1557 -1.0475 15 6 -0.5083 -6.4761 -0.8641 16 8 0.2467 -7.2791 -1.3702 17 6 -1.6682 -6.9547 -0.0293 18 6 -1.6651 -8.4839 0.0190 19 6 -2.8430 -8.9698 0.8660 20 6 -2.6453 -8.5285 2.3194 21 6 -3.7872 -9.0857 3.1735 22 8 -3.8176 -10.5095 3.0555 23 6 -4.0469 -10.9799 1.7257 24 6 -2.9155 -10.4990 0.8135 25 6 0.5006 -3.3057 -2.4270 26 1 1.3492 -2.9482 -3.0102 27 8 -0.6537 -3.3876 -3.2654 28 6 0.2278 -2.3350 -1.2736 29 1 -0.4849 0.8401 -0.0004 30 1 2.7399 -3.5171 0.7491 31 1 1.0468 -4.0684 0.8306 32 1 2.3132 -5.6011 -0.6017 33 1 2.9078 -4.2405 -1.5842 34 1 -0.9131 -4.5135 -0.6425 35 1 -1.5753 -6.5593 0.9821 36 1 -2.6018 -6.6067 -0.4712 37 1 -1.7577 -8.8795 -0.9925 38 1 -0.7314 -8.8316 0.4610 39 1 -3.7698 -8.5472 0.4782 40 1 -1.6937 -8.9102 2.6898 41 1 -2.6478 -7.4399 2.3732 42 1 -4.7345 -8.6719 2.8282 43 1 -3.6286 -8.8106 4.2163 44 1 -4.9978 -10.5910 1.3615 45 1 -4.0756 -12.0695 1.7256 46 1 -3.1113 -10.8194 -0.2096 47 1 -1.9694 -10.9203 1.1535 48 1 -0.9136 -2.5440 -3.6604 49 1 0.0986 -1.3268 -1.6673 50 1 -0.6758 -2.6396 -0.7455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100026467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:28 Heat of formation + Delta-G solvation = -154.945944 kcal Electronic energy + Delta-G solvation = -29001.076094 eV Core-core repulsion = 25026.932494 eV Total energy + Delta-G solvation = -3974.143600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26572 -40.33722 -39.33725 -36.86370 -36.38369 -35.60429 -33.72715 -32.35600 -31.89085 -31.10285 -30.43367 -27.45229 -26.63017 -24.46871 -24.11504 -23.54721 -23.11444 -21.47164 -20.88624 -20.24507 -18.84776 -18.22582 -18.06902 -17.01410 -16.97521 -16.77596 -16.73038 -16.58024 -15.80493 -15.73086 -15.53828 -15.40204 -15.16116 -14.98901 -14.64567 -14.46738 -13.99654 -13.76156 -13.52365 -13.32053 -13.17082 -13.08454 -12.91548 -12.83103 -12.68044 -12.66416 -12.24899 -12.16753 -12.11039 -11.97479 -11.83155 -11.72823 -11.27315 -11.23585 -11.14290 -10.98120 -10.75155 -10.58458 -10.39808 -9.97182 -8.71601 -7.90376 -5.35645 1.47527 1.50255 1.57630 1.73324 2.29607 2.49624 3.02614 3.13595 3.26544 3.66216 3.69442 3.73457 3.82689 3.93408 4.07658 4.12321 4.15335 4.25790 4.27748 4.31301 4.36057 4.43473 4.46138 4.52938 4.64030 4.68075 4.73240 4.82532 4.84611 4.89809 4.93859 4.96195 4.97103 5.07956 5.09553 5.16014 5.20298 5.22589 5.31655 5.33334 5.50856 5.58772 5.60166 5.65553 6.31779 6.34516 6.63024 6.81939 7.12123 7.31929 7.79791 8.31265 9.15105 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.002579 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.122875 B =10855.185142 C =11550.366072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.043 4.043 3 Si 0.963 3.037 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.265 4.265 8 H 0.066 0.934 9 N -0.602 5.602 10 C 0.148 3.852 11 C -0.131 4.131 12 C 0.168 3.832 13 H 0.070 0.930 14 N -0.706 5.706 15 C 0.508 3.492 16 O -0.588 6.588 17 C -0.135 4.135 18 C -0.087 4.087 19 C -0.085 4.085 20 C -0.154 4.154 21 C 0.057 3.943 22 O -0.408 6.408 23 C 0.058 3.942 24 C -0.150 4.150 25 C 0.083 3.917 26 H 0.059 0.941 27 O -0.573 6.573 28 C 0.158 3.842 29 H 0.251 0.749 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.406 0.594 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.060 0.940 48 H 0.391 0.609 49 H 0.064 0.936 50 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.567 -15.714 0.574 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.239 4.239 3 Si 0.792 3.208 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.198 1.198 7 C -0.395 4.395 8 H 0.084 0.916 9 N -0.327 5.327 10 C 0.023 3.977 11 C -0.171 4.171 12 C 0.062 3.938 13 H 0.088 0.912 14 N -0.357 5.357 15 C 0.296 3.704 16 O -0.469 6.469 17 C -0.174 4.174 18 C -0.125 4.125 19 C -0.103 4.103 20 C -0.191 4.191 21 C -0.019 4.019 22 O -0.328 6.328 23 C -0.019 4.019 24 C -0.187 4.187 25 C 0.022 3.978 26 H 0.076 0.924 27 O -0.380 6.380 28 C 0.032 3.968 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.242 0.758 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.120 0.880 46 H 0.102 0.898 47 H 0.079 0.921 48 H 0.240 0.760 49 H 0.083 0.917 50 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -8.073 -16.881 0.554 18.720 hybrid contribution 0.303 2.247 -0.233 2.279 sum -7.771 -14.635 0.321 16.573 Atomic orbital electron populations 1.70135 1.06291 1.25956 1.54904 1.25691 0.96057 1.01112 1.01015 0.85336 0.78109 0.79851 0.77529 1.21188 1.22244 1.19751 1.19472 0.93046 0.85838 1.41128 0.91633 1.44169 1.35863 1.02146 1.50527 1.20954 0.97630 0.85489 0.93670 1.22237 0.96802 0.99742 0.98359 1.20653 0.86606 0.93730 0.92803 0.91196 1.46043 1.30209 1.07362 1.52056 1.21336 0.86722 0.81695 0.80613 1.90637 1.49422 1.54894 1.51995 1.21755 0.96648 0.98054 1.00957 1.21246 0.98285 0.92748 1.00190 1.21202 0.98650 0.95582 0.94913 1.22317 0.99576 1.02063 0.95169 1.22701 0.97782 0.80348 1.01096 1.87897 1.93332 1.22424 1.29123 1.22704 0.97036 1.00203 0.81909 1.22223 0.99891 0.95568 1.01060 1.22596 0.88063 0.95278 0.91813 0.92352 1.86390 1.47610 1.37984 1.65981 1.21193 0.88660 0.97842 0.89120 0.93936 0.92668 0.96154 0.91197 0.90962 0.75803 0.87445 0.87060 0.92131 0.92843 0.89697 0.92101 0.89629 0.92082 0.88316 0.92126 0.88045 0.89846 0.92099 0.75977 0.91725 0.96777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.65 11.19 21.65 0.24 -50.40 16 2 C -0.04 -2.23 4.91 84.86 0.42 -1.81 16 3 Si 0.96 42.54 29.59 68.60 2.03 44.57 16 4 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.26 -13.68 9.59 84.03 0.81 -12.88 16 8 H 0.07 3.35 7.89 -2.91 -0.02 3.33 16 9 N -0.60 -27.89 2.99 -699.14 -2.09 -29.98 16 10 C 0.15 5.85 6.26 86.35 0.54 6.39 16 11 C -0.13 -4.56 5.77 30.66 0.18 -4.38 16 12 C 0.17 5.81 2.47 45.02 0.11 5.92 16 13 H 0.07 2.57 7.58 -2.38 -0.02 2.55 16 14 N -0.71 -22.33 4.15 -442.40 -1.84 -24.16 16 15 C 0.51 15.41 7.79 87.66 0.68 16.09 16 16 O -0.59 -21.85 15.64 -3.04 -0.05 -21.90 16 17 C -0.13 -2.84 5.47 29.85 0.16 -2.68 16 18 C -0.09 -1.77 3.98 30.59 0.12 -1.65 16 19 C -0.09 -1.34 2.27 -10.67 -0.02 -1.37 16 20 C -0.15 -2.43 5.10 30.68 0.16 -2.27 16 21 C 0.06 0.87 6.84 72.01 0.49 1.37 16 22 O -0.41 -7.84 10.77 -148.98 -1.60 -9.44 16 23 C 0.06 0.83 6.84 72.01 0.49 1.33 16 24 C -0.15 -2.27 5.42 30.68 0.17 -2.11 16 25 C 0.08 2.99 3.36 30.67 0.10 3.09 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 O -0.57 -18.47 13.21 -148.98 -1.97 -20.44 16 28 C 0.16 6.80 4.64 86.37 0.40 7.20 16 29 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 30 H 0.05 2.17 7.93 -2.38 -0.02 2.15 16 31 H 0.02 0.81 7.74 -2.39 -0.02 0.79 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.41 12.65 6.87 -92.71 -0.64 12.01 16 35 H 0.11 1.99 6.66 -2.39 -0.02 1.97 16 36 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.06 1.36 8.10 -2.38 -0.02 1.34 16 38 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.09 1.21 6.75 -2.39 -0.02 1.19 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.39 9.95 9.08 -74.05 -0.67 9.28 16 49 H 0.06 3.15 6.04 -2.39 -0.01 3.14 16 50 H 0.01 0.64 6.65 -2.38 -0.02 0.62 16 Total: -1.00 -64.42 384.96 -0.85 -65.26 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.37 Total: 34.25 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 4.81 Total: 12.24 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -3.69 Total: -104.55 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -3.62 Total: -51.78 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -64.42 -0.85 -65.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100026467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.681 kcal (2) G-P(sol) polarization free energy of solvation -64.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds