Wall clock time and date at job start Tue Mar 31 2020 05:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 120.00113 * 2 1 4 4 N 1.34784 * 119.99961 * 179.97438 * 2 1 3 5 5 C 1.46494 * 119.99635 * 180.02562 * 4 2 1 6 6 H 1.08997 * 109.47706 * 34.99696 * 5 4 2 7 7 C 1.53004 * 109.46982 * 155.00372 * 5 4 2 8 8 C 1.50699 * 109.46636 * 294.99501 * 7 5 4 9 9 O 1.21280 * 120.00199 * 0.02562 * 8 7 5 10 10 N 1.34784 * 119.99691 * 179.97438 * 8 7 5 11 11 C 1.46497 * 119.99759 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47191 * 180.02562 * 11 10 8 13 13 C 1.53787 * 113.61409 * 274.14364 * 12 11 10 14 14 C 1.53956 * 87.01780 * 220.04836 * 13 12 11 15 15 N 1.46497 * 113.74846 * 139.94352 * 14 13 12 16 16 C 1.36938 * 120.00273 * 107.39289 * 15 14 13 17 17 H 1.08003 * 120.00176 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00306 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99651 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00117 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47188 * 90.00041 * 20 18 16 22 22 H 1.48502 * 109.46916 * 210.00019 * 20 18 16 23 23 H 1.48503 * 109.46975 * 329.99788 * 20 18 16 24 24 C 1.53776 * 113.61629 * 176.53593 * 12 11 10 25 25 C 1.50702 * 109.47343 * 274.99973 * 5 4 2 26 26 N 1.34773 * 120.00295 * 180.02562 * 25 5 4 27 27 O 1.21282 * 119.99589 * 359.97438 * 25 5 4 28 28 H 1.08999 * 109.47368 * 269.99937 * 1 2 3 29 29 H 1.08994 * 109.47145 * 30.00791 * 1 2 3 30 30 H 1.09013 * 109.46924 * 150.00119 * 1 2 3 31 31 H 0.96995 * 120.00015 * 359.72695 * 4 2 1 32 32 H 1.09002 * 109.47373 * 54.99720 * 7 5 4 33 33 H 1.09001 * 109.47302 * 175.00215 * 7 5 4 34 34 H 0.96994 * 119.99679 * 0.02562 * 10 8 7 35 35 H 1.08995 * 109.47725 * 300.00913 * 11 10 8 36 36 H 1.09002 * 109.47122 * 60.00751 * 11 10 8 37 37 H 1.08995 * 112.85264 * 45.33214 * 12 11 10 38 38 H 1.09003 * 113.61078 * 334.56234 * 13 12 11 39 39 H 1.08992 * 113.61758 * 105.46527 * 13 12 11 40 40 H 1.09000 * 113.53233 * 270.80762 * 14 13 12 41 41 H 0.96996 * 119.99849 * 287.40718 * 15 14 13 42 42 H 0.97003 * 119.99996 * 179.97438 * 19 18 16 43 43 H 1.09005 * 113.61066 * 254.52774 * 24 12 11 44 44 H 1.08995 * 113.61792 * 25.42705 * 24 12 11 45 45 H 0.96997 * 120.00131 * 0.02562 * 26 25 5 46 46 H 0.97004 * 120.00190 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0090 -0.3252 0.5904 7 6 4.1557 -2.4745 0.6111 8 6 3.7565 -2.5405 2.0628 9 8 3.1259 -1.6318 2.5603 10 7 4.0993 -3.6100 2.8080 11 6 3.7118 -3.6740 4.2193 12 6 4.2214 -4.9812 4.8294 13 6 3.2661 -6.1692 4.6267 14 6 3.6092 -6.5873 6.0682 15 7 2.4583 -7.0788 6.8297 16 6 2.3430 -8.4140 7.1109 17 1 3.1008 -9.1048 6.7717 18 6 1.2521 -8.8798 7.8321 19 7 0.3283 -8.0381 8.2450 20 14 1.0952 -10.7011 8.2163 21 1 1.7609 -10.9929 9.5113 22 1 -0.3414 -11.0663 8.3049 23 1 1.7415 -11.4919 7.1382 24 6 3.9391 -5.1093 6.3356 25 6 4.1488 -1.0437 -1.4141 26 7 5.4739 -1.0227 -1.6590 27 8 3.3610 -0.9640 -2.3328 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5139 31 1 1.6959 -2.0073 0.0049 32 1 3.7213 -3.3189 0.0760 33 1 5.2420 -2.5135 0.5310 34 1 4.6033 -4.3369 2.4099 35 1 4.1468 -2.8298 4.7543 36 1 2.6255 -3.6343 4.2999 37 1 5.2542 -5.2004 4.5585 38 1 2.2251 -5.8746 4.4937 39 1 3.6059 -6.8790 3.8726 40 1 4.4743 -7.2469 6.1358 41 1 1.7777 -6.4585 7.1345 42 1 -0.4342 -8.3636 8.7486 43 1 4.8215 -4.9648 6.9590 44 1 3.0825 -4.5244 6.6706 45 1 6.1040 -1.0875 -0.9244 46 1 5.7976 -0.9428 -2.5700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100735063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:20 Heat of formation + Delta-G solvation = -87.639447 kcal Electronic energy + Delta-G solvation = -27289.744376 eV Core-core repulsion = 23214.979061 eV Total energy + Delta-G solvation = -4074.765315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91495 -39.70188 -38.94298 -38.51845 -35.33037 -34.73031 -34.15376 -33.36532 -31.83268 -30.38670 -29.47907 -27.55598 -25.38086 -25.15490 -23.80686 -21.49664 -21.13158 -20.75294 -20.56178 -19.16003 -18.37966 -17.56613 -17.13372 -17.11962 -16.80640 -16.31328 -15.94699 -15.57125 -15.16577 -15.05710 -14.79405 -14.69288 -14.13548 -13.85645 -13.72818 -13.54201 -13.47988 -13.06285 -12.85523 -12.48028 -12.35600 -12.10157 -11.95753 -11.88235 -11.47475 -11.29074 -10.89047 -10.67202 -10.59111 -10.36778 -10.20086 -10.13805 -10.06330 -9.99033 -9.89556 -9.55913 -9.32106 -9.15880 -8.92139 -7.01820 -5.83178 -3.12343 2.14834 2.35805 2.46372 2.79083 2.90880 3.32645 3.38986 3.44135 3.46046 4.01914 4.29578 4.53573 4.53743 4.58777 4.75298 4.82649 4.88430 4.94681 5.05174 5.14656 5.22436 5.27990 5.40726 5.42099 5.66160 5.73170 5.76084 5.85355 6.02888 6.04238 6.14900 6.23380 6.27724 6.33209 6.34546 6.51233 6.74853 6.83912 7.03777 7.23351 7.29421 7.64058 7.80629 7.98326 8.07176 8.35306 9.46399 10.04308 10.38256 11.39108 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019205 B = 0.002018 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.572903 B =13872.562137 C =14410.801138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.527 3.473 3 O -0.549 6.549 4 N -0.700 5.700 5 C 0.146 3.854 6 H 0.124 0.876 7 C -0.149 4.149 8 C 0.507 3.493 9 O -0.527 6.527 10 N -0.723 5.723 11 C 0.132 3.868 12 C -0.127 4.127 13 C -0.161 4.161 14 C 0.166 3.834 15 N -0.713 5.713 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.143 4.143 25 C 0.508 3.492 26 N -0.854 5.854 27 O -0.528 6.528 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.404 0.596 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.401 0.599 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.224 12.182 -18.708 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.315 3.685 3 O -0.426 6.426 4 N -0.352 5.352 5 C 0.036 3.964 6 H 0.141 0.859 7 C -0.190 4.190 8 C 0.292 3.708 9 O -0.403 6.403 10 N -0.374 5.374 11 C 0.009 3.991 12 C -0.147 4.147 13 C -0.202 4.202 14 C 0.054 3.946 15 N -0.350 5.350 16 C -0.377 4.377 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.182 4.182 25 C 0.290 3.710 26 N -0.419 5.419 27 O -0.403 6.403 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.239 0.761 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.230 0.770 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 10.479 13.436 -18.733 25.323 hybrid contribution 0.222 -1.655 0.094 1.672 sum 10.701 11.781 -18.640 24.510 Atomic orbital electron populations 1.21840 0.91331 1.04823 1.04938 1.20693 0.90664 0.83066 0.74064 1.90690 1.70775 1.31435 1.49668 1.45466 1.04649 1.09441 1.75614 1.20461 0.83325 0.99972 0.92690 0.85855 1.21971 1.03982 0.98545 0.94536 1.20279 0.80151 0.82535 0.87848 1.90790 1.39019 1.37234 1.73227 1.46040 1.57640 1.21580 1.12164 1.21453 1.00393 0.97889 0.79354 1.22639 0.99708 0.94301 0.98006 1.23977 0.98636 0.95961 1.01663 1.21541 0.91566 0.91577 0.89946 1.42409 1.23187 1.06311 1.63121 1.19293 1.05256 0.84549 1.28569 0.91106 1.24779 0.97373 0.97840 1.00906 1.69660 1.12528 1.33247 1.42506 0.86190 0.76900 0.84921 0.78159 1.21662 1.21737 1.20742 1.23447 1.01310 1.00122 0.93357 1.21104 0.82697 0.75359 0.91819 1.43855 1.07239 1.77860 1.12929 1.90754 1.55351 1.48228 1.45971 0.88568 0.88924 0.90145 0.76120 0.87452 0.86992 0.76547 0.91703 0.91147 0.89396 0.90385 0.92787 0.90712 0.78062 0.93404 0.91983 0.90105 0.77012 0.76595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.30 36.01 0.37 -1.06 16 2 C 0.53 6.45 7.77 -10.98 -0.09 6.36 16 3 O -0.55 -8.91 16.76 5.56 0.09 -8.82 16 4 N -0.70 -6.89 3.75 -54.93 -0.21 -7.09 16 5 C 0.15 1.24 1.94 -69.08 -0.13 1.11 16 6 H 0.12 1.27 7.39 -51.93 -0.38 0.89 16 7 C -0.15 -0.78 5.19 -27.88 -0.14 -0.92 16 8 C 0.51 4.58 7.69 -10.98 -0.08 4.50 16 9 O -0.53 -7.12 15.35 5.56 0.09 -7.04 16 10 N -0.72 -5.97 5.56 -60.30 -0.33 -6.30 16 11 C 0.13 1.47 5.50 -4.04 -0.02 1.44 16 12 C -0.13 -1.48 3.75 -89.81 -0.34 -1.81 16 13 C -0.16 -2.41 7.45 -25.82 -0.19 -2.60 16 14 C 0.17 3.02 4.48 -67.03 -0.30 2.72 16 15 N -0.71 -17.16 5.41 -52.55 -0.28 -17.44 16 16 C -0.25 -6.61 9.97 -15.06 -0.15 -6.76 16 17 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 20 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.14 -2.10 7.40 -25.92 -0.19 -2.29 16 25 C 0.51 4.56 7.46 -10.99 -0.08 4.48 16 26 N -0.85 -3.88 8.74 31.22 0.27 -3.61 16 27 O -0.53 -7.07 17.16 5.56 0.10 -6.98 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.40 3.10 8.60 -40.82 -0.35 2.75 16 32 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.11 0.21 7.43 -51.93 -0.39 -0.18 16 34 H 0.40 2.25 8.47 -40.82 -0.35 1.90 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.93 7.88 -51.93 -0.41 0.52 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.31 7.92 -51.93 -0.41 0.90 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 41 H 0.39 9.93 7.92 -40.82 -0.32 9.61 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 45 H 0.40 0.60 8.19 -40.82 -0.33 0.26 16 46 H 0.40 1.53 8.93 -40.82 -0.36 1.16 16 LS Contribution 391.21 15.07 5.90 5.90 Total: -1.00 -38.69 391.21 -7.21 -45.89 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -7.08 Total: 10.86 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.45 Total: 4.71 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: 0.17 Total: -61.35 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.27 Total: -22.84 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.69 -7.21 -45.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100735063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.746 kcal (2) G-P(sol) polarization free energy of solvation -38.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds