Wall clock time and date at job start Tue Mar 31 2020 05:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 120.00113 * 2 1 4 4 N 1.34784 * 119.99961 * 179.97438 * 2 1 3 5 5 C 1.46494 * 119.99635 * 180.02562 * 4 2 1 6 6 H 1.08997 * 109.47706 * 34.99696 * 5 4 2 7 7 C 1.53004 * 109.46982 * 155.00372 * 5 4 2 8 8 C 1.50699 * 109.46636 * 294.99501 * 7 5 4 9 9 O 1.21280 * 120.00199 * 0.02562 * 8 7 5 10 10 N 1.34784 * 119.99691 * 179.97438 * 8 7 5 11 11 C 1.46497 * 119.99759 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47191 * 180.02562 * 11 10 8 13 13 C 1.53787 * 113.61409 * 274.14364 * 12 11 10 14 14 C 1.53956 * 87.01780 * 220.04836 * 13 12 11 15 15 N 1.46497 * 113.74846 * 139.94352 * 14 13 12 16 16 C 1.36938 * 120.00273 * 107.39289 * 15 14 13 17 17 H 1.08003 * 120.00176 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00306 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99651 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00117 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47188 * 90.00041 * 20 18 16 22 22 H 1.48502 * 109.46916 * 210.00019 * 20 18 16 23 23 H 1.48503 * 109.46975 * 329.99788 * 20 18 16 24 24 C 1.53776 * 113.61629 * 176.53593 * 12 11 10 25 25 C 1.50702 * 109.47343 * 274.99973 * 5 4 2 26 26 N 1.34773 * 120.00295 * 180.02562 * 25 5 4 27 27 O 1.21282 * 119.99589 * 359.97438 * 25 5 4 28 28 H 1.08999 * 109.47368 * 269.99937 * 1 2 3 29 29 H 1.08994 * 109.47145 * 30.00791 * 1 2 3 30 30 H 1.09013 * 109.46924 * 150.00119 * 1 2 3 31 31 H 0.96995 * 120.00015 * 359.72695 * 4 2 1 32 32 H 1.09002 * 109.47373 * 54.99720 * 7 5 4 33 33 H 1.09001 * 109.47302 * 175.00215 * 7 5 4 34 34 H 0.96994 * 119.99679 * 0.02562 * 10 8 7 35 35 H 1.08995 * 109.47725 * 300.00913 * 11 10 8 36 36 H 1.09002 * 109.47122 * 60.00751 * 11 10 8 37 37 H 1.08995 * 112.85264 * 45.33214 * 12 11 10 38 38 H 1.09003 * 113.61078 * 334.56234 * 13 12 11 39 39 H 1.08992 * 113.61758 * 105.46527 * 13 12 11 40 40 H 1.09000 * 113.53233 * 270.80762 * 14 13 12 41 41 H 0.96996 * 119.99849 * 287.40718 * 15 14 13 42 42 H 0.97003 * 119.99996 * 179.97438 * 19 18 16 43 43 H 1.09005 * 113.61066 * 254.52774 * 24 12 11 44 44 H 1.08995 * 113.61792 * 25.42705 * 24 12 11 45 45 H 0.96997 * 120.00131 * 0.02562 * 26 25 5 46 46 H 0.97004 * 120.00190 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0090 -0.3252 0.5904 7 6 4.1557 -2.4745 0.6111 8 6 3.7565 -2.5405 2.0628 9 8 3.1259 -1.6318 2.5603 10 7 4.0993 -3.6100 2.8080 11 6 3.7118 -3.6740 4.2193 12 6 4.2214 -4.9812 4.8294 13 6 3.2661 -6.1692 4.6267 14 6 3.6092 -6.5873 6.0682 15 7 2.4583 -7.0788 6.8297 16 6 2.3430 -8.4140 7.1109 17 1 3.1008 -9.1048 6.7717 18 6 1.2521 -8.8798 7.8321 19 7 0.3283 -8.0381 8.2450 20 14 1.0952 -10.7011 8.2163 21 1 1.7609 -10.9929 9.5113 22 1 -0.3414 -11.0663 8.3049 23 1 1.7415 -11.4919 7.1382 24 6 3.9391 -5.1093 6.3356 25 6 4.1488 -1.0437 -1.4141 26 7 5.4739 -1.0227 -1.6590 27 8 3.3610 -0.9640 -2.3328 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5139 31 1 1.6959 -2.0073 0.0049 32 1 3.7213 -3.3189 0.0760 33 1 5.2420 -2.5135 0.5310 34 1 4.6033 -4.3369 2.4099 35 1 4.1468 -2.8298 4.7543 36 1 2.6255 -3.6343 4.2999 37 1 5.2542 -5.2004 4.5585 38 1 2.2251 -5.8746 4.4937 39 1 3.6059 -6.8790 3.8726 40 1 4.4743 -7.2469 6.1358 41 1 1.7777 -6.4585 7.1345 42 1 -0.4342 -8.3636 8.7486 43 1 4.8215 -4.9648 6.9590 44 1 3.0825 -4.5244 6.6706 45 1 6.1040 -1.0875 -0.9244 46 1 5.7976 -0.9428 -2.5700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100735063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:19 Heat of formation + Delta-G solvation = -122.012668 kcal Electronic energy + Delta-G solvation = -27291.234910 eV Core-core repulsion = 23214.979061 eV Total energy + Delta-G solvation = -4076.255849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66583 -40.59390 -39.79366 -39.67710 -36.24233 -35.82893 -34.97087 -34.77440 -32.61765 -32.08902 -30.26976 -28.60774 -26.42309 -26.33682 -25.43880 -22.48610 -22.15837 -21.56893 -21.29506 -20.42502 -19.12628 -18.91667 -18.26041 -17.91681 -17.60752 -17.09825 -16.77557 -16.54014 -16.42861 -16.00997 -15.93506 -15.69976 -15.34303 -15.04973 -14.82537 -14.63587 -14.41477 -14.23745 -13.60601 -13.39817 -13.20535 -13.13719 -13.06811 -12.95826 -12.89017 -12.69762 -12.59969 -12.17026 -12.05631 -11.56201 -11.52781 -11.48439 -11.08162 -11.01990 -10.86576 -10.76885 -10.67066 -10.13365 -9.98828 -8.95673 -7.93475 -5.21471 1.47192 1.48396 1.49763 1.58068 1.60641 1.68097 2.09740 2.19441 2.57780 2.71998 3.38783 3.43370 3.67888 3.79600 3.80494 3.93181 3.97217 4.05145 4.21206 4.29588 4.38957 4.42297 4.47274 4.47968 4.60535 4.62264 4.66387 4.84270 5.01183 5.01804 5.03018 5.10546 5.27048 5.32653 5.41413 5.48105 5.56351 5.77735 5.86778 6.29107 6.38360 6.47270 6.63606 7.21381 7.28680 7.32915 7.34518 8.13814 8.34625 9.30079 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019205 B = 0.002018 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.572903 B =13872.562137 C =14410.801138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.512 3.488 3 O -0.600 6.600 4 N -0.695 5.695 5 C 0.142 3.858 6 H 0.104 0.896 7 C -0.134 4.134 8 C 0.507 3.493 9 O -0.577 6.577 10 N -0.710 5.710 11 C 0.139 3.861 12 C -0.092 4.092 13 C -0.151 4.151 14 C 0.140 3.860 15 N -0.731 5.731 16 C -0.240 4.240 17 H 0.080 0.920 18 C -0.081 4.081 19 N -0.973 5.973 20 Si 0.972 3.028 21 H -0.288 1.288 22 H -0.299 1.299 23 H -0.267 1.267 24 C -0.140 4.140 25 C 0.508 3.492 26 N -0.829 5.829 27 O -0.579 6.579 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.414 0.586 32 H 0.133 0.867 33 H 0.156 0.844 34 H 0.418 0.582 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.124 0.876 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.371 0.629 42 H 0.250 0.750 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.419 0.581 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.857 10.819 -20.322 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.302 3.698 3 O -0.481 6.481 4 N -0.346 5.346 5 C 0.032 3.968 6 H 0.121 0.879 7 C -0.174 4.174 8 C 0.294 3.706 9 O -0.456 6.456 10 N -0.362 5.362 11 C 0.015 3.985 12 C -0.111 4.111 13 C -0.192 4.192 14 C 0.031 3.969 15 N -0.368 5.368 16 C -0.372 4.372 17 H 0.098 0.902 18 C -0.273 4.273 19 N -0.624 5.624 20 Si 0.801 3.199 21 H -0.215 1.215 22 H -0.226 1.226 23 H -0.191 1.191 24 C -0.179 4.179 25 C 0.291 3.709 26 N -0.395 5.395 27 O -0.457 6.457 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.251 0.749 32 H 0.151 0.849 33 H 0.174 0.826 34 H 0.256 0.744 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.142 0.858 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.251 0.749 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 13.244 12.008 -20.388 27.116 hybrid contribution -0.473 -1.199 0.580 1.413 sum 12.771 10.809 -19.808 25.929 Atomic orbital electron populations 1.21868 0.88873 1.06064 1.05695 1.21396 0.92205 0.82967 0.73256 1.90650 1.72006 1.33167 1.52293 1.45504 1.05597 1.09282 1.74177 1.20554 0.82653 1.01113 0.92528 0.87859 1.21990 1.06675 0.97421 0.91353 1.20867 0.79000 0.81627 0.89118 1.90791 1.41258 1.39063 1.74467 1.45840 1.57398 1.22078 1.10902 1.21154 0.98821 0.97364 0.81151 1.22456 1.00605 0.92952 0.95132 1.23724 0.98352 0.97650 0.99467 1.22025 0.90007 0.93446 0.91418 1.42647 1.24673 1.05281 1.64219 1.19731 1.04670 0.86033 1.26746 0.90232 1.25591 0.97689 1.01919 1.02074 1.69824 1.13263 1.35002 1.44266 0.85157 0.76246 0.80335 0.78145 1.21549 1.22588 1.19139 1.23337 1.01272 0.97152 0.96181 1.21127 0.83611 0.74923 0.91227 1.43653 1.06027 1.75622 1.14153 1.90737 1.56879 1.50953 1.47171 0.87892 0.88920 0.87709 0.74932 0.84873 0.82616 0.74417 0.91943 0.93769 0.85772 0.92699 0.91091 0.90201 0.79731 0.94166 0.90522 0.91787 0.74892 0.75740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 10.30 71.24 0.73 -2.03 16 2 C 0.51 12.84 7.77 87.66 0.68 13.52 16 3 O -0.60 -20.41 16.76 -3.03 -0.05 -20.46 16 4 N -0.69 -13.33 3.75 -446.10 -1.67 -15.00 16 5 C 0.14 2.22 1.94 44.25 0.09 2.31 16 6 H 0.10 2.10 7.39 -2.39 -0.02 2.09 16 7 C -0.13 -0.93 5.19 29.85 0.15 -0.77 16 8 C 0.51 7.92 7.69 87.66 0.67 8.59 16 9 O -0.58 -15.23 15.35 -3.03 -0.05 -15.28 16 10 N -0.71 -9.33 5.56 -463.07 -2.57 -11.90 16 11 C 0.14 2.80 5.50 86.38 0.47 3.28 16 12 C -0.09 -1.86 3.75 -10.27 -0.04 -1.90 16 13 C -0.15 -4.22 7.45 31.18 0.23 -3.99 16 14 C 0.14 4.93 4.48 45.58 0.20 5.13 16 15 N -0.73 -35.51 5.41 -320.17 -1.73 -37.24 16 16 C -0.24 -12.89 9.97 84.03 0.84 -12.06 16 17 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 19 N -0.97 -59.25 13.06 21.65 0.28 -58.97 16 20 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 22 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 C -0.14 -3.91 7.40 31.12 0.23 -3.68 16 25 C 0.51 8.37 7.46 87.66 0.65 9.02 16 26 N -0.83 -5.34 8.74 -173.53 -1.52 -6.85 16 27 O -0.58 -15.20 17.16 -3.04 -0.05 -15.25 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.10 1.18 8.14 -2.38 -0.02 1.17 16 31 H 0.41 5.90 8.60 -92.71 -0.80 5.11 16 32 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.16 -0.27 7.43 -2.39 -0.02 -0.29 16 34 H 0.42 2.61 8.47 -92.71 -0.79 1.83 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.04 1.15 7.88 -2.39 -0.02 1.13 16 37 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.05 1.81 7.92 -2.39 -0.02 1.79 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.08 2.71 8.10 -2.39 -0.02 2.69 16 41 H 0.37 19.77 7.92 -92.71 -0.73 19.03 16 42 H 0.25 14.81 8.31 -92.71 -0.77 14.03 16 43 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 45 H 0.42 -0.27 8.19 -92.71 -0.76 -1.03 16 46 H 0.41 2.08 8.93 -92.71 -0.83 1.25 16 Total: -1.00 -89.54 391.21 -2.78 -92.33 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -2.84 Total: 28.08 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 5.39 Total: 13.31 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -7.21 Total: -129.97 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.15 Total: -50.99 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -89.54 -2.78 -92.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100735063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.687 kcal (2) G-P(sol) polarization free energy of solvation -89.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds