Wall clock time and date at job start Tue Mar 31 2020 05:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.51076 * 2 1 4 4 N 1.46493 * 109.46682 * 59.90171 * 3 2 1 5 5 C 1.34781 * 119.99816 * 180.02562 * 4 3 2 6 6 O 1.21287 * 119.99821 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.00259 * 180.02562 * 5 4 3 8 8 C 1.53001 * 109.46529 * 299.99619 * 7 5 4 9 9 C 1.53008 * 109.46982 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.46992 * 59.99586 * 9 8 7 11 11 O 1.42898 * 109.47077 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47187 * 300.00392 * 10 9 8 13 13 C 1.52994 * 109.47164 * 179.97438 * 7 5 4 14 14 C 1.53293 * 109.51208 * 239.90242 * 2 1 3 15 15 N 1.47157 * 108.38382 * 292.32345 * 14 2 1 16 16 C 1.36939 * 120.98171 * 129.44370 * 15 14 2 17 17 H 1.07993 * 120.00605 * 206.24261 * 16 15 14 18 18 C 1.38819 * 119.99798 * 26.24200 * 16 15 14 19 19 N 1.31615 * 119.99895 * 16.91172 * 18 16 15 20 20 Si 1.86801 * 119.99951 * 196.91155 * 18 16 15 21 21 H 1.48504 * 109.46906 * 59.99872 * 20 18 16 22 22 H 1.48497 * 109.47004 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47124 * 300.00123 * 20 18 16 24 24 C 1.47143 * 118.03745 * 309.46745 * 15 14 2 25 25 C 1.53297 * 108.38704 * 50.53469 * 24 15 14 26 26 O 1.42956 * 109.55307 * 120.12916 * 2 1 3 27 27 H 1.09004 * 109.47199 * 60.00293 * 1 2 3 28 28 H 1.08998 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47234 * 299.99770 * 1 2 3 30 30 H 1.08995 * 109.46901 * 299.89953 * 3 2 1 31 31 H 1.09004 * 109.46521 * 179.89768 * 3 2 1 32 32 H 0.96997 * 120.00536 * 359.97438 * 4 3 2 33 33 H 1.08997 * 109.47360 * 59.99312 * 7 5 4 34 34 H 1.08991 * 109.47523 * 60.00189 * 8 7 5 35 35 H 1.09006 * 109.47324 * 299.99786 * 8 7 5 36 36 H 1.08997 * 109.47019 * 299.99762 * 9 8 7 37 37 H 1.08993 * 109.47034 * 179.97438 * 9 8 7 38 38 H 1.09006 * 109.47038 * 60.00524 * 10 9 8 39 39 H 0.96694 * 114.00438 * 180.02562 * 11 10 9 40 40 H 1.09004 * 109.46530 * 180.02562 * 12 10 9 41 41 H 1.08997 * 109.46965 * 299.99910 * 12 10 9 42 42 H 1.08997 * 109.47438 * 59.99489 * 13 7 5 43 43 H 1.09002 * 109.47138 * 299.99676 * 13 7 5 44 44 H 1.09000 * 109.68710 * 52.04596 * 14 2 1 45 45 H 1.09001 * 109.68229 * 172.56886 * 14 2 1 46 46 H 0.97005 * 119.99594 * 179.97438 * 19 18 16 47 47 H 1.09007 * 109.68173 * 170.25558 * 24 15 14 48 48 H 1.08999 * 109.68211 * 290.80901 * 24 15 14 49 49 H 1.08998 * 109.51142 * 67.61844 * 25 24 15 50 50 H 1.08998 * 109.51394 * 187.72279 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.5512 2.1337 1.1950 5 6 1.8769 3.4241 1.4078 6 8 2.5759 4.0126 0.6103 7 6 1.3735 4.1354 2.6374 8 6 -0.1565 4.1358 2.6357 9 6 -0.6676 4.8585 3.8837 10 6 -0.1571 6.3009 3.8828 11 8 -0.6350 6.9760 5.0480 12 6 1.3729 6.3004 3.8844 13 6 1.8844 5.5775 2.6373 14 6 2.0420 -0.7246 -1.2501 15 7 1.6971 -2.1504 -1.1340 16 6 1.0620 -2.8073 -2.1540 17 1 0.4494 -3.6709 -1.9415 18 6 1.2055 -2.3631 -3.4613 19 7 2.1870 -1.5437 -3.7739 20 14 0.0058 -2.9282 -4.7769 21 1 -1.3698 -2.5101 -4.4049 22 1 0.3739 -2.3156 -6.0786 23 1 0.0591 -4.4077 -4.8928 24 6 2.0543 -2.8494 0.1106 25 6 1.5417 -2.0213 1.2944 26 8 2.0085 -0.6762 1.1651 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6795 1.9557 -0.8909 31 1 3.1311 1.4413 0.0018 32 1 0.9919 1.6632 1.8326 33 1 1.7357 3.6220 3.5280 34 1 -0.5201 3.1083 2.6359 35 1 -0.5187 4.6493 1.7450 36 1 -0.3054 4.3455 4.7746 37 1 -1.7576 4.8592 3.8823 38 1 -0.5194 6.8139 2.9919 39 1 -0.3499 7.8977 5.1134 40 1 1.7364 7.3280 3.8842 41 1 1.7351 5.7873 4.7752 42 1 1.5226 6.0912 1.7467 43 1 2.9744 5.5769 2.6387 44 1 1.5697 -0.3037 -2.1377 45 1 3.1239 -0.6128 -1.3219 46 1 2.2875 -1.2336 -4.6875 47 1 1.5901 -3.8355 0.1240 48 1 3.1375 -2.9520 0.1760 49 1 0.4517 -2.0294 1.2995 50 1 1.9133 -2.4486 2.2257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107908720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:20 Heat of formation + Delta-G solvation = -127.351160 kcal Electronic energy + Delta-G solvation = -29359.646473 eV Core-core repulsion = 25386.699472 eV Total energy + Delta-G solvation = -3972.947000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.33241 -39.16313 -38.30439 -35.68164 -34.94156 -34.34474 -31.91589 -31.28251 -31.04451 -30.01772 -27.97280 -26.47965 -25.60701 -23.40743 -23.23572 -22.87536 -21.25473 -20.54210 -19.88170 -18.70849 -17.57113 -17.37976 -16.92394 -16.06045 -15.91258 -15.26906 -15.07627 -14.91298 -14.68743 -14.39246 -14.07588 -13.97067 -13.87434 -13.52182 -13.41493 -13.01574 -12.83489 -12.67450 -12.54749 -12.34630 -12.10077 -11.85380 -11.62393 -11.50318 -11.42274 -11.21335 -11.03710 -10.99720 -10.82836 -10.70042 -10.50298 -10.33736 -10.29382 -10.09332 -10.00337 -9.67782 -9.51465 -9.06205 -8.80830 -8.55785 -6.76561 -5.86762 -3.30182 2.76503 3.30211 3.34145 3.39526 3.39830 3.82808 4.22836 4.32025 4.38409 4.41652 4.70572 4.81951 4.84623 4.96285 5.04040 5.12640 5.13542 5.20973 5.31850 5.43159 5.45610 5.50323 5.61705 5.65385 5.67113 5.74275 5.81433 5.84571 5.89652 5.91852 5.98583 6.01258 6.08504 6.12024 6.12795 6.29858 6.44024 6.56362 6.67899 6.74372 6.80194 7.04798 7.30415 7.44333 7.68028 7.69194 7.85867 8.30671 8.38169 9.08491 9.71609 10.28772 11.21232 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021116 B = 0.002652 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.701898 B =10557.049818 C =10789.922135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 C 0.139 3.861 4 N -0.716 5.716 5 C 0.512 3.488 6 O -0.545 6.545 7 C -0.108 4.108 8 C -0.108 4.108 9 C -0.110 4.110 10 C 0.102 3.898 11 O -0.570 6.570 12 C -0.151 4.151 13 C -0.096 4.096 14 C 0.160 3.840 15 N -0.590 5.590 16 C -0.255 4.255 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.384 6.384 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.401 0.599 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.377 0.623 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.029 0.971 46 H 0.256 0.744 47 H 0.061 0.939 48 H 0.025 0.975 49 H 0.048 0.952 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 12.995 16.027 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.015 3.985 4 N -0.367 5.367 5 C 0.298 3.702 6 O -0.423 6.423 7 C -0.130 4.130 8 C -0.146 4.146 9 C -0.148 4.148 10 C 0.043 3.957 11 O -0.376 6.376 12 C -0.189 4.189 13 C -0.134 4.134 14 C 0.033 3.967 15 N -0.314 5.314 16 C -0.385 4.385 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.208 1.208 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.304 6.304 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.237 0.763 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.224 0.776 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.114 0.886 45 H 0.047 0.953 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.043 0.957 49 H 0.066 0.934 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.356 12.940 15.481 20.642 hybrid contribution -0.614 -0.250 -0.787 1.029 sum -4.970 12.690 14.694 20.041 Atomic orbital electron populations 1.22200 0.95769 1.03211 1.00681 1.22547 0.93530 0.90689 0.89508 1.21351 0.99824 0.89906 0.87397 1.46012 1.53149 1.11638 1.25920 1.20552 0.80364 0.81910 0.87372 1.90699 1.38120 1.66331 1.47144 1.21382 0.96879 0.97474 0.97237 1.21502 0.93116 1.01523 0.98489 1.21457 1.01279 0.93551 0.98464 1.21875 0.92645 0.93612 0.87524 1.86504 1.76958 1.28941 1.45189 1.22282 0.96133 1.01194 0.99259 1.21261 1.01446 0.93033 0.97684 1.21292 0.97815 0.83934 0.93661 1.43988 1.68600 1.04941 1.13877 1.19113 1.21726 1.12227 0.85398 0.91461 1.25042 0.97274 1.00093 0.97094 1.70005 1.29176 1.36736 1.18633 0.86357 0.80979 0.78350 0.81016 1.20976 1.21534 1.20840 1.21597 0.97545 0.95223 0.87374 1.23033 0.98296 0.83129 0.98723 1.87810 1.72933 1.25785 1.43849 0.91914 0.90834 0.93973 0.90154 0.90946 0.76349 0.88425 0.90566 0.90984 0.90903 0.90863 0.92609 0.77616 0.91452 0.91023 0.90982 0.90731 0.88562 0.95293 0.93354 0.92052 0.95670 0.93396 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 7.92 37.16 0.29 -2.39 16 2 C 0.08 1.43 0.76 -90.46 -0.07 1.36 16 3 C 0.14 2.35 4.82 -4.04 -0.02 2.33 16 4 N -0.72 -9.93 5.05 -60.29 -0.30 -10.23 16 5 C 0.51 7.16 7.15 -10.98 -0.08 7.08 16 6 O -0.55 -9.75 15.98 5.55 0.09 -9.66 16 7 C -0.11 -1.08 2.53 -91.77 -0.23 -1.31 16 8 C -0.11 -0.92 5.10 -26.73 -0.14 -1.05 16 9 C -0.11 -0.88 5.57 -26.73 -0.15 -1.03 16 10 C 0.10 0.80 3.47 -26.73 -0.09 0.70 16 11 O -0.57 -4.63 13.32 -35.23 -0.47 -5.09 16 12 C -0.15 -1.13 5.54 -26.76 -0.15 -1.28 16 13 C -0.10 -0.92 4.49 -26.76 -0.12 -1.04 16 14 C 0.16 3.68 4.11 -3.53 -0.01 3.67 16 15 N -0.59 -14.23 2.57 -171.83 -0.44 -14.67 16 16 C -0.26 -6.73 9.65 -15.06 -0.15 -6.88 16 17 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 18 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 19 N -0.90 -25.53 11.14 55.49 0.62 -24.91 16 20 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.11 2.21 6.73 -3.54 -0.02 2.19 16 25 C 0.05 0.78 6.60 37.31 0.25 1.03 16 26 O -0.38 -6.93 9.98 -35.23 -0.35 -7.28 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.07 1.35 6.12 -51.93 -0.32 1.03 16 29 H 0.04 0.58 6.86 -51.93 -0.36 0.22 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.40 4.85 6.61 -40.82 -0.27 4.58 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.60 7.56 -51.93 -0.39 0.20 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.38 1.53 9.08 45.56 0.41 1.94 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.07 0.79 8.10 -51.93 -0.42 0.36 16 44 H 0.10 2.45 6.13 -51.93 -0.32 2.13 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.05 0.78 6.25 -51.93 -0.32 0.46 16 50 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -31.70 383.16 -8.75 -40.45 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.86 Total: 6.13 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -0.77 Total: 3.39 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.13 Total: -49.81 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.73 Total: -22.04 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.70 -8.75 -40.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107908720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.897 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds