Wall clock time and date at job start Tue Mar 31 2020 05:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.55650 * 2 1 4 4 N 1.46498 * 109.46984 * 304.87668 * 3 2 1 5 5 C 1.34777 * 119.99954 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00214 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99891 * 179.97438 * 5 4 3 8 8 C 1.52995 * 109.47441 * 300.00137 * 7 5 4 9 9 C 1.53000 * 109.47478 * 179.97438 * 8 7 5 10 10 C 1.53007 * 109.46717 * 59.99821 * 9 8 7 11 11 O 1.42899 * 109.46809 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47293 * 300.00292 * 10 9 8 13 13 C 1.52994 * 109.47182 * 60.00207 * 12 10 9 14 14 C 1.53290 * 109.51407 * 120.12931 * 2 1 3 15 15 N 1.47166 * 108.41716 * 67.64184 * 14 2 1 16 16 C 1.36933 * 120.99120 * 230.54983 * 15 14 2 17 17 H 1.08000 * 120.00180 * 153.70650 * 16 15 14 18 18 C 1.38813 * 120.00094 * 333.70170 * 16 15 14 19 19 N 1.31620 * 119.99900 * 160.02568 * 18 16 15 20 20 Si 1.86798 * 119.99867 * 340.02586 * 18 16 15 21 21 H 1.48500 * 109.46937 * 91.85831 * 20 18 16 22 22 H 1.48502 * 109.47208 * 211.85857 * 20 18 16 23 23 H 1.48499 * 109.47296 * 331.85455 * 20 18 16 24 24 C 1.47155 * 118.02599 * 50.46688 * 15 14 2 25 25 C 1.53300 * 108.41547 * 309.53664 * 24 15 14 26 26 O 1.42958 * 109.22465 * 52.28134 * 25 24 15 27 27 H 1.09005 * 109.47423 * 180.12984 * 1 2 3 28 28 H 1.09004 * 109.47263 * 300.12500 * 1 2 3 29 29 H 1.08996 * 109.47425 * 60.12348 * 1 2 3 30 30 H 1.08997 * 109.47054 * 64.87287 * 3 2 1 31 31 H 1.08993 * 109.47324 * 184.87343 * 3 2 1 32 32 H 0.97002 * 119.99884 * 359.97438 * 4 3 2 33 33 H 1.09009 * 109.46884 * 60.00487 * 7 5 4 34 34 H 1.08993 * 109.47048 * 300.00162 * 8 7 5 35 35 H 1.09003 * 109.47181 * 60.00118 * 8 7 5 36 36 H 1.09002 * 109.47233 * 300.00834 * 9 8 7 37 37 H 1.08997 * 109.47238 * 180.02562 * 9 8 7 38 38 H 1.09002 * 109.46443 * 60.00529 * 10 9 8 39 39 H 0.96701 * 113.99988 * 300.00179 * 11 10 9 40 40 H 1.08993 * 109.47048 * 299.99779 * 12 10 9 41 41 H 1.09003 * 109.47181 * 179.97438 * 12 10 9 42 42 H 1.09007 * 109.47107 * 179.97438 * 13 12 10 43 43 H 1.09000 * 109.47792 * 59.99597 * 13 12 10 44 44 H 1.09003 * 109.68354 * 187.34399 * 14 2 1 45 45 H 1.09005 * 109.68141 * 307.89260 * 14 2 1 46 46 H 0.96999 * 119.99776 * 179.97438 * 19 18 16 47 47 H 1.08995 * 109.68037 * 189.78791 * 24 15 14 48 48 H 1.09003 * 109.67969 * 69.27666 * 24 15 14 49 49 H 1.09000 * 109.50966 * 172.20794 * 25 24 15 50 50 H 1.09003 * 109.50501 * 292.30491 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.4613 2.1662 -1.1331 5 6 1.7717 3.4622 -1.3349 6 8 2.5322 4.0284 -0.5787 7 6 1.1747 4.2073 -2.5009 8 6 1.5822 3.5220 -3.8067 9 6 0.9755 4.2781 -4.9904 10 6 1.4866 5.7203 -4.9902 11 8 0.9195 6.4267 -6.0954 12 6 1.0791 6.4056 -3.6844 13 6 1.6858 5.6495 -2.5008 14 6 2.0420 -0.7252 1.2496 15 7 1.6967 -2.1511 1.1339 16 6 1.0620 -2.8079 2.1542 17 1 0.4485 -3.6710 1.9417 18 6 1.2071 -2.3645 3.4615 19 7 0.3278 -2.7139 4.3764 20 14 2.6505 -1.2719 3.9223 21 1 2.2554 0.1532 3.7873 22 1 3.0489 -1.5442 5.3267 23 1 3.7946 -1.5561 3.0193 24 6 2.0520 -2.8498 -0.1115 25 6 1.5395 -2.0209 -1.2949 26 8 2.0074 -0.6763 -1.1656 27 1 -0.3634 -1.0277 0.0023 28 1 -0.3634 0.5158 0.8889 29 1 -0.3634 0.5119 -0.8910 30 1 1.7525 1.9302 0.9304 31 1 3.1285 1.4414 -0.0873 32 1 0.8533 1.7132 -1.7382 33 1 0.0881 4.2072 -2.4141 34 1 2.6686 3.5221 -3.8934 35 1 1.2177 2.4947 -3.8070 36 1 -0.1110 4.2778 -4.9035 37 1 1.2655 3.7896 -5.9207 38 1 2.5731 5.7206 -5.0772 39 1 1.1366 6.0471 -6.9579 40 1 -0.0073 6.4052 -3.5975 41 1 1.4436 7.4329 -3.6841 42 1 1.3958 6.1380 -1.5704 43 1 2.7723 5.6498 -2.5876 44 1 3.1241 -0.6148 1.3207 45 1 1.5704 -0.3041 2.1376 46 1 0.4294 -2.4043 5.2901 47 1 1.5871 -3.8355 -0.1249 48 1 3.1350 -2.9538 -0.1778 49 1 1.9112 -2.4478 -2.2264 50 1 0.4495 -2.0291 -1.3000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107908721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:22 Heat of formation + Delta-G solvation = -146.089599 kcal Electronic energy + Delta-G solvation = -29484.464724 eV Core-core repulsion = 25510.705164 eV Total energy + Delta-G solvation = -3973.759560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50257 -40.68241 -39.24098 -36.73585 -36.35740 -36.01767 -33.65654 -33.37446 -31.74579 -30.86994 -29.95254 -28.15753 -27.26512 -25.32263 -24.20662 -23.66862 -22.71083 -21.52525 -20.80708 -20.58784 -19.06093 -18.42568 -18.11185 -17.70768 -17.13304 -16.96320 -16.58623 -16.23052 -15.91941 -15.68345 -15.53343 -15.46045 -15.38616 -14.83451 -14.69496 -14.30778 -14.20240 -13.94028 -13.79384 -13.52299 -13.31050 -13.21714 -13.08868 -13.04723 -12.73317 -12.67222 -12.38228 -12.32908 -12.23543 -12.06508 -12.02256 -11.74213 -11.64050 -11.28100 -11.12163 -11.05856 -10.82971 -10.65124 -10.49757 -10.13865 -8.96466 -8.21845 -5.53724 1.22846 1.36019 1.42253 1.61578 2.10691 2.34382 2.65922 2.97463 3.21210 3.25969 3.64122 3.67524 3.75738 3.80928 3.84643 3.89843 4.11860 4.21163 4.28787 4.30527 4.37964 4.40586 4.42828 4.45019 4.50840 4.51670 4.59001 4.62496 4.70992 4.80074 4.81343 4.88099 4.95111 5.02642 5.04902 5.09303 5.12146 5.17584 5.18467 5.30080 5.33754 5.36391 5.44897 5.77084 6.07060 6.23158 6.53256 6.80138 6.93433 7.22593 7.52705 7.94010 8.97431 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022953 B = 0.002866 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.593767 B = 9767.829856 C =10461.703355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.103 3.897 3 C 0.141 3.859 4 N -0.706 5.706 5 C 0.512 3.488 6 O -0.587 6.587 7 C -0.100 4.100 8 C -0.105 4.105 9 C -0.140 4.140 10 C 0.102 3.898 11 O -0.586 6.586 12 C -0.109 4.109 13 C -0.092 4.092 14 C 0.102 3.898 15 N -0.616 5.616 16 C -0.241 4.241 17 H 0.064 0.936 18 C -0.027 4.027 19 N -0.951 5.951 20 Si 0.930 3.070 21 H -0.275 1.275 22 H -0.310 1.310 23 H -0.267 1.267 24 C 0.104 3.896 25 C 0.050 3.950 26 O -0.375 6.375 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.415 0.585 33 H 0.119 0.881 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.394 0.606 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.028 0.972 45 H 0.061 0.939 46 H 0.262 0.738 47 H 0.074 0.926 48 H 0.033 0.967 49 H 0.126 0.874 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.172 13.875 -23.440 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.062 3.938 3 C 0.016 3.984 4 N -0.359 5.359 5 C 0.300 3.700 6 O -0.467 6.467 7 C -0.121 4.121 8 C -0.142 4.142 9 C -0.178 4.178 10 C 0.043 3.957 11 O -0.394 6.394 12 C -0.146 4.146 13 C -0.130 4.130 14 C -0.024 4.024 15 N -0.341 5.341 16 C -0.370 4.370 17 H 0.081 0.919 18 C -0.223 4.223 19 N -0.597 5.597 20 Si 0.760 3.240 21 H -0.202 1.202 22 H -0.239 1.239 23 H -0.192 1.192 24 C -0.021 4.021 25 C -0.027 4.027 26 O -0.295 6.295 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.253 0.747 33 H 0.137 0.863 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.244 0.756 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.046 0.954 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.051 0.949 49 H 0.143 0.857 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.555 14.685 -22.413 26.801 hybrid contribution 0.617 -0.633 0.897 1.260 sum 1.172 14.051 -21.515 25.724 Atomic orbital electron populations 1.22162 0.93800 1.03097 1.02529 1.21937 0.94734 0.90572 0.86603 1.21089 0.98368 0.88771 0.90185 1.45857 1.48978 1.11088 1.29931 1.21287 0.80564 0.81646 0.86481 1.90687 1.38084 1.68677 1.49258 1.21415 1.02717 0.95432 0.92515 1.21471 1.01367 0.99750 0.91659 1.22191 1.01884 0.94993 0.98738 1.21846 0.96403 0.90935 0.86508 1.86474 1.77485 1.57495 1.17970 1.21445 1.01720 0.99291 0.92182 1.21231 1.00602 0.93004 0.98206 1.21922 0.97505 0.85497 0.97494 1.44414 1.69198 1.04755 1.15777 1.18840 1.20739 1.11791 0.85630 0.91861 1.25747 0.99849 1.00797 0.95865 1.69920 1.36054 1.50351 1.03354 0.86193 0.82580 0.79205 0.76001 1.20195 1.23870 1.19235 1.21889 0.98130 0.96392 0.85678 1.23153 0.99301 0.81561 0.98668 1.87869 1.72937 1.26467 1.42187 0.92063 0.92638 0.89701 0.91100 0.91824 0.74697 0.86327 0.91832 0.89605 0.90405 0.89523 0.92580 0.75605 0.90816 0.91320 0.91677 0.92188 0.95415 0.92115 0.92900 0.90711 0.94913 0.85664 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.71 7.86 71.98 0.57 -4.14 16 2 C 0.10 3.32 0.78 -10.70 -0.01 3.31 16 3 C 0.14 4.25 4.85 86.38 0.42 4.67 16 4 N -0.71 -16.48 5.09 -463.07 -2.36 -18.83 16 5 C 0.51 12.64 7.15 87.66 0.63 13.26 16 6 O -0.59 -19.82 15.98 -3.01 -0.05 -19.87 16 7 C -0.10 -1.62 2.52 -11.54 -0.03 -1.65 16 8 C -0.10 -1.27 5.10 30.59 0.16 -1.12 16 9 C -0.14 -1.32 5.55 30.60 0.17 -1.15 16 10 C 0.10 1.25 3.47 30.59 0.11 1.36 16 11 O -0.59 -7.60 13.32 -148.98 -1.98 -9.59 16 12 C -0.11 -1.58 5.57 30.59 0.17 -1.41 16 13 C -0.09 -1.62 4.49 30.59 0.14 -1.49 16 14 C 0.10 4.26 3.05 86.35 0.26 4.53 16 15 N -0.62 -27.72 2.35 -697.49 -1.64 -29.36 16 16 C -0.24 -13.08 10.10 84.03 0.85 -12.23 16 17 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 18 C -0.03 -1.56 5.26 84.86 0.45 -1.11 16 19 N -0.95 -58.51 13.97 21.65 0.30 -58.21 16 20 Si 0.93 46.59 24.29 68.60 1.67 48.25 16 21 H -0.28 -13.11 6.58 99.48 0.65 -12.45 16 22 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 23 H -0.27 -13.10 6.55 99.48 0.65 -12.45 16 24 C 0.10 3.69 6.73 86.35 0.58 4.27 16 25 C 0.05 1.38 6.60 72.08 0.48 1.85 16 26 O -0.38 -11.15 10.17 -148.98 -1.52 -12.67 16 27 H 0.06 2.07 6.12 -2.38 -0.01 2.05 16 28 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.08 1.86 6.59 -2.39 -0.02 1.84 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.41 7.52 6.42 -92.71 -0.60 6.92 16 33 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 0.88 7.57 -2.39 -0.02 0.86 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.39 1.78 9.08 -74.06 -0.67 1.10 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 1.30 8.10 -2.38 -0.02 1.28 16 43 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 44 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 45 H 0.06 2.81 4.60 -2.38 -0.01 2.80 16 46 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 47 H 0.07 2.59 7.96 -2.39 -0.02 2.57 16 48 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 50 H 0.06 1.61 6.26 -2.39 -0.01 1.59 16 Total: -1.00 -72.51 376.23 -1.08 -73.59 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -0.43 Total: 17.73 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 4.93 Total: 8.96 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -3.69 Total: -106.40 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -3.55 Total: -42.12 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.67 Total: 48.25 kcal Total: -72.51 -1.08 -73.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107908721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.504 kcal (2) G-P(sol) polarization free energy of solvation -72.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds