Wall clock time and date at job start Tue Mar 31 2020 05:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46750 * 2 1 4 4 C 1.53000 * 109.47007 * 119.99358 * 2 1 3 5 5 H 1.09003 * 109.48891 * 59.97646 * 4 2 1 6 6 O 1.42904 * 109.48280 * 299.94772 * 4 2 1 7 7 C 1.42902 * 114.09554 * 178.85927 * 6 4 2 8 8 C 1.53094 * 109.41900 * 61.15701 * 7 6 4 9 9 C 1.53185 * 109.16067 * 302.39009 * 8 7 6 10 10 C 1.53092 * 109.48004 * 180.02562 * 4 2 1 11 11 H 1.09000 * 109.57626 * 57.66185 * 10 4 2 12 12 C 1.52999 * 109.52277 * 297.50159 * 10 4 2 13 13 N 1.46510 * 109.46970 * 175.31658 * 12 10 4 14 14 C 1.34776 * 119.99645 * 179.97438 * 13 12 10 15 15 O 1.21343 * 120.00411 * 359.97438 * 14 13 12 16 16 C 1.49450 * 119.99804 * 179.97438 * 14 13 12 17 17 O 1.21353 * 119.99782 * 359.97438 * 16 14 13 18 18 N 1.34771 * 120.00174 * 180.02562 * 16 14 13 19 19 C 1.46496 * 120.00157 * 179.97438 * 18 16 14 20 20 C 1.53007 * 109.47355 * 180.02562 * 19 18 16 21 21 C 1.50697 * 109.46894 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00599 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99675 * 179.97438 * 21 20 19 24 24 N 1.31517 * 120.00210 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00019 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.46845 * 269.99914 * 25 23 21 27 27 H 1.48503 * 109.47399 * 29.99403 * 25 23 21 28 28 H 1.48498 * 109.47295 * 150.00010 * 25 23 21 29 29 H 1.08994 * 109.47446 * 300.00040 * 1 2 3 30 30 H 1.09001 * 109.47089 * 60.00441 * 1 2 3 31 31 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47446 * 239.99960 * 2 1 3 33 33 H 1.09007 * 109.47010 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47424 * 299.99684 * 3 2 1 35 35 H 1.09000 * 109.47852 * 59.99800 * 3 2 1 36 36 H 1.09010 * 109.47927 * 301.17048 * 7 6 4 37 37 H 1.08999 * 109.48967 * 181.14619 * 7 6 4 38 38 H 1.08995 * 109.52268 * 182.48818 * 8 7 6 39 39 H 1.08997 * 109.51746 * 62.29680 * 8 7 6 40 40 H 1.08993 * 109.54219 * 297.11187 * 9 8 7 41 41 H 1.08997 * 109.53754 * 176.84143 * 9 8 7 42 42 H 1.09000 * 109.47535 * 55.31538 * 12 10 4 43 43 H 1.08998 * 109.47172 * 295.31281 * 12 10 4 44 44 H 0.97000 * 119.99679 * 359.97438 * 13 12 10 45 45 H 0.97001 * 120.00302 * 0.02562 * 18 16 14 46 46 H 1.09000 * 109.47160 * 60.00099 * 19 18 16 47 47 H 1.08999 * 109.47596 * 299.99902 * 19 18 16 48 48 H 1.08995 * 109.46729 * 60.00268 * 20 19 18 49 49 H 1.09007 * 109.46460 * 300.00123 * 20 19 18 50 50 H 0.96998 * 119.99640 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6764 -1.7487 1.2499 6 8 1.5647 -0.0468 2.4162 7 6 1.9641 -0.6563 3.6455 8 6 3.4920 -0.6538 3.7421 9 6 4.0735 -1.3914 2.5320 10 6 3.5709 -0.7207 1.2499 11 1 3.9358 0.3056 1.2082 12 6 4.0828 -1.4953 0.0338 13 7 5.5436 -1.3998 -0.0264 14 6 6.2183 -2.0100 -1.0209 15 8 5.6160 -2.6388 -1.8660 16 6 7.7083 -1.9122 -1.0826 17 8 8.3106 -1.2830 -0.2377 18 7 8.3830 -2.5219 -2.0773 19 6 9.8435 -2.4256 -2.1382 20 6 10.3555 -3.1999 -3.3545 21 6 11.8579 -3.1012 -3.4167 22 1 12.3942 -2.5426 -2.6638 23 6 12.5482 -3.7251 -4.4342 24 7 13.8594 -3.6387 -4.4889 25 14 11.6209 -4.6919 -5.7361 26 1 11.4830 -6.1045 -5.2990 27 1 10.2728 -4.0989 -5.9266 28 1 12.3697 -4.6412 -7.0175 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9565 0.8899 36 1 1.5995 -1.6831 3.6775 37 1 1.5461 -0.0960 4.4818 38 1 3.7998 -1.1576 4.6583 39 1 3.8546 0.3741 3.7510 40 1 3.7509 -2.4323 2.5500 41 1 5.1619 -1.3449 2.5653 42 1 3.6533 -1.0717 -0.8740 43 1 3.7904 -2.5417 0.1201 44 1 6.0250 -0.8975 0.6495 45 1 7.9015 -3.0240 -2.7534 46 1 10.2737 -2.8486 -1.2304 47 1 10.1353 -1.3790 -2.2251 48 1 9.9253 -2.7764 -4.2621 49 1 10.0636 -4.2466 -3.2680 50 1 14.3449 -4.0773 -5.2050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117574865.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:12 Heat of formation + Delta-G solvation = -145.876273 kcal Electronic energy + Delta-G solvation = -28015.694378 eV Core-core repulsion = 24041.944069 eV Total energy + Delta-G solvation = -3973.750310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83387 -40.15084 -38.37211 -36.20625 -35.64211 -35.13815 -33.43431 -32.79752 -31.00714 -30.29961 -27.52773 -27.20649 -25.84633 -25.35172 -23.47591 -22.36654 -21.08113 -20.90999 -20.43113 -19.96082 -18.34221 -17.22708 -16.94065 -16.43224 -16.21414 -16.10131 -15.52604 -15.35321 -15.13605 -14.86499 -14.43031 -14.32004 -14.19551 -14.18429 -13.76573 -13.53868 -13.39149 -12.97624 -12.91451 -12.66654 -12.62672 -12.27867 -12.01936 -11.88105 -11.62806 -11.51648 -11.50519 -11.27291 -11.26102 -11.06327 -10.80121 -10.58609 -10.45751 -10.32272 -9.97460 -9.87284 -9.47646 -9.41344 -9.32013 -8.79411 -8.62514 -6.13515 -4.14284 1.51863 2.42447 3.25627 3.31458 3.33453 3.33720 3.35536 3.76226 4.08546 4.17096 4.27997 4.36665 4.47063 4.58968 4.62358 4.66495 4.71031 4.81206 4.89340 4.98195 5.12270 5.18235 5.19525 5.23514 5.35165 5.36757 5.40459 5.51908 5.54111 5.58230 5.61802 5.64869 5.76871 5.82636 5.95054 5.97792 6.02989 6.07674 6.08627 6.45301 6.49238 6.79240 6.91674 7.07586 7.16977 7.53348 7.61258 7.82470 8.18764 8.40517 8.89683 9.46380 10.99177 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.002025 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.681443 B =13822.277924 C =14442.039306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.147 4.147 4 C 0.107 3.893 5 H 0.061 0.939 6 O -0.370 6.370 7 C 0.060 3.940 8 C -0.156 4.156 9 C -0.122 4.122 10 C -0.134 4.134 11 H 0.094 0.906 12 C 0.122 3.878 13 N -0.703 5.703 14 C 0.508 3.492 15 O -0.521 6.521 16 C 0.498 3.502 17 O -0.529 6.529 18 N -0.690 5.690 19 C 0.127 3.873 20 C -0.024 4.024 21 C -0.524 4.524 22 H 0.077 0.923 23 C 0.070 3.930 24 N -0.897 5.897 25 Si 0.881 3.119 26 H -0.276 1.276 27 H -0.265 1.265 28 H -0.286 1.286 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.412 0.588 45 H 0.409 0.591 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.025 0.975 49 H 0.020 0.980 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.851 6.788 14.750 33.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.204 4.204 4 C 0.048 3.952 5 H 0.079 0.921 6 O -0.289 6.289 7 C -0.017 4.017 8 C -0.193 4.193 9 C -0.159 4.159 10 C -0.153 4.153 11 H 0.112 0.888 12 C -0.001 4.001 13 N -0.358 5.358 14 C 0.289 3.711 15 O -0.396 6.396 16 C 0.278 3.722 17 O -0.407 6.407 18 N -0.341 5.341 19 C 0.005 3.995 20 C -0.061 4.061 21 C -0.563 4.563 22 H 0.095 0.905 23 C -0.132 4.132 24 N -0.535 5.535 25 Si 0.708 3.292 26 H -0.202 1.202 27 H -0.190 1.190 28 H -0.212 1.212 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.249 0.751 45 H 0.244 0.756 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.043 0.957 49 H 0.038 0.962 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -28.783 6.890 14.615 33.008 hybrid contribution -0.047 -0.861 -0.658 1.084 sum -28.829 6.029 13.957 32.593 Atomic orbital electron populations 1.21765 0.94435 1.01726 1.02201 1.21269 0.96768 0.97285 0.95821 1.21833 1.00980 0.95416 1.02179 1.21993 0.91015 0.95928 0.86244 0.92078 1.87943 1.74203 1.53573 1.13155 1.22582 0.94052 0.98136 0.86944 1.22190 0.96554 1.01879 0.98717 1.21707 1.01263 0.99504 0.93432 1.22152 0.97127 1.01387 0.94625 0.88776 1.21503 0.79260 1.01030 0.98323 1.45736 1.07584 1.53398 1.29037 1.20424 0.88935 0.79817 0.81937 1.90753 1.70097 1.40296 1.38487 1.19962 0.87631 0.81378 0.83266 1.90747 1.69710 1.41246 1.38992 1.46207 1.09876 1.50848 1.27215 1.21718 0.74867 1.01775 1.01095 1.19827 0.98117 0.95352 0.92852 1.20871 0.88786 1.34027 1.12567 0.90538 1.24993 0.94774 0.95872 0.97593 1.69900 1.06463 1.43947 1.33197 0.86763 0.80406 0.80713 0.81304 1.20160 1.18951 1.21219 0.91802 0.92666 0.92923 0.89686 0.92545 0.92742 0.91753 0.93251 0.88860 0.90673 0.90838 0.91415 0.90928 0.90368 0.90870 0.75089 0.75565 0.91260 0.91230 0.95706 0.96160 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.05 37.16 0.34 -0.57 16 2 C -0.09 -0.61 2.52 -90.62 -0.23 -0.84 16 3 C -0.15 -1.01 8.70 37.16 0.32 -0.68 16 4 C 0.11 0.71 1.88 -26.68 -0.05 0.66 16 5 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 6 O -0.37 -2.77 9.06 -35.23 -0.32 -3.09 16 7 C 0.06 0.34 6.84 37.21 0.25 0.59 16 8 C -0.16 -0.87 6.14 -26.59 -0.16 -1.03 16 9 C -0.12 -0.77 5.14 -26.54 -0.14 -0.91 16 10 C -0.13 -0.90 1.63 -90.48 -0.15 -1.04 16 11 H 0.09 0.67 6.32 -51.93 -0.33 0.34 16 12 C 0.12 1.02 4.89 -4.04 -0.02 1.00 16 13 N -0.70 -7.36 5.31 -60.73 -0.32 -7.68 16 14 C 0.51 7.07 7.89 -11.59 -0.09 6.98 16 15 O -0.52 -8.20 16.48 5.50 0.09 -8.11 16 16 C 0.50 8.09 7.89 -11.59 -0.09 8.00 16 17 O -0.53 -9.57 16.48 5.49 0.09 -9.48 16 18 N -0.69 -11.75 5.55 -60.73 -0.34 -12.08 16 19 C 0.13 2.52 5.61 -4.04 -0.02 2.50 16 20 C -0.02 -0.54 4.16 -27.88 -0.12 -0.65 16 21 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 22 H 0.08 2.27 7.99 -52.49 -0.42 1.86 16 23 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 24 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 25 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H 0.06 0.44 7.68 -51.93 -0.40 0.04 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.55 6.40 -51.93 -0.33 0.22 16 33 H 0.06 0.40 6.38 -51.92 -0.33 0.06 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.48 7.68 -51.93 -0.40 0.08 16 36 H 0.05 0.26 8.14 -51.92 -0.42 -0.17 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.49 7.28 -51.93 -0.38 0.11 16 42 H 0.08 0.67 6.28 -51.93 -0.33 0.35 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.41 3.96 7.15 -40.82 -0.29 3.67 16 45 H 0.41 6.46 7.94 -40.82 -0.32 6.13 16 46 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 48 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 49 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 50 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 394.39 15.07 5.94 5.94 Total: -1.00 -31.73 394.39 -7.87 -39.59 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.54 Total: 3.75 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -0.58 Total: 1.07 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.11 Total: -46.08 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.14 Total: -20.69 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.73 -7.87 -39.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117574865.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.282 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds