Wall clock time and date at job start Tue Mar 31 2020 05:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46750 * 2 1 4 4 C 1.53000 * 109.47007 * 119.99358 * 2 1 3 5 5 H 1.09003 * 109.48891 * 59.97646 * 4 2 1 6 6 O 1.42904 * 109.48280 * 299.94772 * 4 2 1 7 7 C 1.42902 * 114.09554 * 178.85927 * 6 4 2 8 8 C 1.53094 * 109.41900 * 61.15701 * 7 6 4 9 9 C 1.53185 * 109.16067 * 302.39009 * 8 7 6 10 10 C 1.53092 * 109.48004 * 180.02562 * 4 2 1 11 11 H 1.09000 * 109.57626 * 57.66185 * 10 4 2 12 12 C 1.52999 * 109.52277 * 297.50159 * 10 4 2 13 13 N 1.46510 * 109.46970 * 175.31658 * 12 10 4 14 14 C 1.34776 * 119.99645 * 179.97438 * 13 12 10 15 15 O 1.21343 * 120.00411 * 359.97438 * 14 13 12 16 16 C 1.49450 * 119.99804 * 179.97438 * 14 13 12 17 17 O 1.21353 * 119.99782 * 359.97438 * 16 14 13 18 18 N 1.34771 * 120.00174 * 180.02562 * 16 14 13 19 19 C 1.46496 * 120.00157 * 179.97438 * 18 16 14 20 20 C 1.53007 * 109.47355 * 180.02562 * 19 18 16 21 21 C 1.50697 * 109.46894 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00599 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99675 * 179.97438 * 21 20 19 24 24 N 1.31517 * 120.00210 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00019 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.46845 * 269.99914 * 25 23 21 27 27 H 1.48503 * 109.47399 * 29.99403 * 25 23 21 28 28 H 1.48498 * 109.47295 * 150.00010 * 25 23 21 29 29 H 1.08994 * 109.47446 * 300.00040 * 1 2 3 30 30 H 1.09001 * 109.47089 * 60.00441 * 1 2 3 31 31 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47446 * 239.99960 * 2 1 3 33 33 H 1.09007 * 109.47010 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47424 * 299.99684 * 3 2 1 35 35 H 1.09000 * 109.47852 * 59.99800 * 3 2 1 36 36 H 1.09010 * 109.47927 * 301.17048 * 7 6 4 37 37 H 1.08999 * 109.48967 * 181.14619 * 7 6 4 38 38 H 1.08995 * 109.52268 * 182.48818 * 8 7 6 39 39 H 1.08997 * 109.51746 * 62.29680 * 8 7 6 40 40 H 1.08993 * 109.54219 * 297.11187 * 9 8 7 41 41 H 1.08997 * 109.53754 * 176.84143 * 9 8 7 42 42 H 1.09000 * 109.47535 * 55.31538 * 12 10 4 43 43 H 1.08998 * 109.47172 * 295.31281 * 12 10 4 44 44 H 0.97000 * 119.99679 * 359.97438 * 13 12 10 45 45 H 0.97001 * 120.00302 * 0.02562 * 18 16 14 46 46 H 1.09000 * 109.47160 * 60.00099 * 19 18 16 47 47 H 1.08999 * 109.47596 * 299.99902 * 19 18 16 48 48 H 1.08995 * 109.46729 * 60.00268 * 20 19 18 49 49 H 1.09007 * 109.46460 * 300.00123 * 20 19 18 50 50 H 0.96998 * 119.99640 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6764 -1.7487 1.2499 6 8 1.5647 -0.0468 2.4162 7 6 1.9641 -0.6563 3.6455 8 6 3.4920 -0.6538 3.7421 9 6 4.0735 -1.3914 2.5320 10 6 3.5709 -0.7207 1.2499 11 1 3.9358 0.3056 1.2082 12 6 4.0828 -1.4953 0.0338 13 7 5.5436 -1.3998 -0.0264 14 6 6.2183 -2.0100 -1.0209 15 8 5.6160 -2.6388 -1.8660 16 6 7.7083 -1.9122 -1.0826 17 8 8.3106 -1.2830 -0.2377 18 7 8.3830 -2.5219 -2.0773 19 6 9.8435 -2.4256 -2.1382 20 6 10.3555 -3.1999 -3.3545 21 6 11.8579 -3.1012 -3.4167 22 1 12.3942 -2.5426 -2.6638 23 6 12.5482 -3.7251 -4.4342 24 7 13.8594 -3.6387 -4.4889 25 14 11.6209 -4.6919 -5.7361 26 1 11.4830 -6.1045 -5.2990 27 1 10.2728 -4.0989 -5.9266 28 1 12.3697 -4.6412 -7.0175 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9565 0.8899 36 1 1.5995 -1.6831 3.6775 37 1 1.5461 -0.0960 4.4818 38 1 3.7998 -1.1576 4.6583 39 1 3.8546 0.3741 3.7510 40 1 3.7509 -2.4323 2.5500 41 1 5.1619 -1.3449 2.5653 42 1 3.6533 -1.0717 -0.8740 43 1 3.7904 -2.5417 0.1201 44 1 6.0250 -0.8975 0.6495 45 1 7.9015 -3.0240 -2.7534 46 1 10.2737 -2.8486 -1.2304 47 1 10.1353 -1.3790 -2.2251 48 1 9.9253 -2.7764 -4.2621 49 1 10.0636 -4.2466 -3.2680 50 1 14.3449 -4.0773 -5.2050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117574865.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:11 Heat of formation + Delta-G solvation = -168.252878 kcal Electronic energy + Delta-G solvation = -28016.664701 eV Core-core repulsion = 24041.944069 eV Total energy + Delta-G solvation = -3974.720632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.81715 -40.93917 -39.58581 -37.15285 -36.61115 -36.10578 -34.84473 -34.08727 -32.12972 -31.59215 -28.22283 -28.03336 -27.01497 -26.18011 -24.63792 -23.13825 -22.63638 -21.60048 -21.49683 -20.65818 -19.52905 -19.02502 -18.03645 -17.33808 -17.21982 -16.83699 -16.49536 -16.25040 -16.20633 -16.09987 -15.69377 -15.46822 -15.23188 -14.80968 -14.68724 -14.64443 -14.55021 -14.21987 -13.79054 -13.51221 -13.39759 -13.23927 -13.07237 -12.87151 -12.80144 -12.52019 -12.40432 -12.23005 -12.19985 -12.01455 -11.78626 -11.76800 -11.59907 -11.51618 -11.32441 -11.09150 -10.79379 -10.76869 -10.39287 -10.28689 -10.21997 -8.30536 -6.37338 0.30927 1.29018 1.39475 1.41132 1.52315 2.10915 2.36066 2.61877 2.84231 3.04589 3.40523 3.55581 3.60782 3.73479 4.00966 4.07425 4.14185 4.21266 4.25852 4.29275 4.33863 4.38359 4.47202 4.58809 4.60930 4.71851 4.74458 4.82217 4.88137 4.91418 4.97297 4.98842 5.04125 5.06535 5.10980 5.12236 5.15127 5.26477 5.29046 5.34916 5.36656 5.46860 5.54868 5.58329 5.88837 6.20012 6.31274 6.34291 6.66948 6.72911 6.91527 7.27207 8.85631 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.002025 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.681443 B =13822.277924 C =14442.039306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 C -0.144 4.144 4 C 0.109 3.891 5 H 0.066 0.934 6 O -0.383 6.383 7 C 0.055 3.945 8 C -0.152 4.152 9 C -0.123 4.123 10 C -0.124 4.124 11 H 0.092 0.908 12 C 0.122 3.878 13 N -0.685 5.685 14 C 0.516 3.484 15 O -0.538 6.538 16 C 0.499 3.501 17 O -0.550 6.550 18 N -0.688 5.688 19 C 0.142 3.858 20 C -0.017 4.017 21 C -0.536 4.536 22 H 0.036 0.964 23 C 0.006 3.994 24 N -0.947 5.947 25 Si 0.953 3.047 26 H -0.266 1.266 27 H -0.241 1.241 28 H -0.286 1.286 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.418 0.582 45 H 0.418 0.582 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.036 0.964 49 H 0.034 0.966 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.497 6.125 14.597 35.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.201 4.201 4 C 0.050 3.950 5 H 0.084 0.916 6 O -0.303 6.303 7 C -0.021 4.021 8 C -0.190 4.190 9 C -0.160 4.160 10 C -0.143 4.143 11 H 0.110 0.890 12 C 0.000 4.000 13 N -0.339 5.339 14 C 0.296 3.704 15 O -0.416 6.416 16 C 0.280 3.720 17 O -0.428 6.428 18 N -0.340 5.340 19 C 0.019 3.981 20 C -0.055 4.055 21 C -0.574 4.574 22 H 0.054 0.946 23 C -0.191 4.191 24 N -0.587 5.587 25 Si 0.776 3.224 26 H -0.191 1.191 27 H -0.164 1.164 28 H -0.212 1.212 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.256 0.744 45 H 0.255 0.745 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -31.475 6.248 14.501 35.213 hybrid contribution 0.793 -0.570 -0.479 1.087 sum -30.682 5.678 14.022 34.209 Atomic orbital electron populations 1.21732 0.94199 1.01929 1.01987 1.21297 0.96991 0.97059 0.95953 1.21799 1.00758 0.95653 1.01922 1.21980 0.90687 0.96108 0.86197 0.91632 1.87935 1.74415 1.54121 1.13782 1.22717 0.94122 0.98654 0.86604 1.22162 0.96456 1.01555 0.98799 1.21723 1.01026 0.99740 0.93538 1.22061 0.97250 1.00946 0.94077 0.89032 1.21658 0.77536 1.01577 0.99243 1.45727 1.08542 1.51832 1.27779 1.19880 0.87543 0.80364 0.82633 1.90755 1.69867 1.41529 1.39425 1.20377 0.88830 0.80396 0.82386 1.90740 1.70509 1.41938 1.39622 1.45978 1.08579 1.51415 1.27984 1.21278 0.76722 1.00593 0.99514 1.19696 0.94774 0.96619 0.94421 1.21198 0.91543 1.33147 1.11528 0.94586 1.26008 0.95631 0.97159 1.00307 1.70059 1.08554 1.45594 1.34498 0.85618 0.79813 0.79299 0.77669 1.19081 1.16397 1.21177 0.92597 0.92285 0.92510 0.89374 0.92796 0.92478 0.92520 0.92589 0.87866 0.89640 0.91369 0.91129 0.91338 0.90114 0.90520 0.74439 0.74549 0.92230 0.92266 0.94607 0.94736 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.05 71.98 0.65 -0.94 16 2 C -0.09 -1.11 2.52 -10.79 -0.03 -1.14 16 3 C -0.14 -1.82 8.70 71.98 0.63 -1.19 16 4 C 0.11 1.27 1.88 30.62 0.06 1.33 16 5 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 6 O -0.38 -5.17 9.06 -148.98 -1.35 -6.52 16 7 C 0.06 0.54 6.84 72.01 0.49 1.03 16 8 C -0.15 -1.44 6.14 30.69 0.19 -1.25 16 9 C -0.12 -1.34 5.14 30.72 0.16 -1.18 16 10 C -0.12 -1.45 1.63 -10.70 -0.02 -1.47 16 11 H 0.09 1.16 6.32 -2.39 -0.02 1.14 16 12 C 0.12 1.80 4.89 86.38 0.42 2.22 16 13 N -0.69 -13.12 5.31 -464.40 -2.46 -15.58 16 14 C 0.52 13.45 7.89 87.27 0.69 14.14 16 15 O -0.54 -15.86 16.48 -3.23 -0.05 -15.91 16 16 C 0.50 15.59 7.89 87.27 0.69 16.28 16 17 O -0.55 -19.43 16.48 -3.26 -0.05 -19.49 16 18 N -0.69 -22.43 5.55 -464.41 -2.58 -25.01 16 19 C 0.14 5.57 5.61 86.38 0.48 6.06 16 20 C -0.02 -0.76 4.16 29.85 0.12 -0.64 16 21 C -0.54 -30.05 9.66 25.60 0.25 -29.80 16 22 H 0.04 2.24 7.99 -2.91 -0.02 2.21 16 23 C 0.01 0.37 5.47 84.65 0.46 0.83 16 24 N -0.95 -58.47 13.96 21.45 0.30 -58.17 16 25 Si 0.95 42.60 27.47 68.60 1.88 44.49 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 27 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 28 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 29 H 0.05 0.72 7.68 -2.39 -0.02 0.70 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.98 6.40 -2.39 -0.02 0.97 16 33 H 0.05 0.69 6.38 -2.38 -0.02 0.68 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.80 7.68 -2.39 -0.02 0.78 16 36 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.81 7.28 -2.39 -0.02 0.79 16 42 H 0.08 1.22 6.28 -2.39 -0.01 1.20 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.42 7.33 7.15 -92.71 -0.66 6.67 16 45 H 0.42 12.29 7.94 -92.71 -0.74 11.55 16 46 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 48 H 0.04 1.52 7.20 -2.39 -0.02 1.50 16 49 H 0.03 1.44 7.57 -2.38 -0.02 1.42 16 50 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -68.14 394.39 0.42 -67.71 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.51 Total: 24.19 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 5.25 Total: 4.28 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -4.74 Total: -98.76 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -1.46 Total: -41.92 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.49 kcal Total: -68.14 0.42 -67.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117574865.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.538 kcal (2) G-P(sol) polarization free energy of solvation -68.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds