Wall clock time and date at job start Tue Mar 31 2020 05:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47011 * 2 1 4 4 C 1.46762 * 124.35418 * 89.99946 * 3 2 1 5 5 C 1.54477 * 105.47435 * 162.95955 * 4 3 2 6 6 H 1.08999 * 110.97548 * 267.25813 * 5 4 3 7 7 C 1.50708 * 110.96670 * 143.53223 * 5 4 3 8 8 O 1.21280 * 120.00140 * 3.08972 * 7 5 4 9 9 N 1.34779 * 119.99519 * 183.08849 * 7 5 4 10 10 C 1.46503 * 119.99777 * 179.97438 * 9 7 5 11 11 C 1.52993 * 109.47198 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46980 * 180.02562 * 11 10 9 13 13 C 1.46902 * 110.99844 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.47027 * 179.97438 * 13 12 11 15 15 O 1.21293 * 120.00255 * 0.02562 * 14 13 12 16 16 N 1.34783 * 120.00004 * 180.02562 * 14 13 12 17 17 C 1.37092 * 119.99804 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00499 * 0.02562 * 17 16 14 19 19 C 1.38956 * 119.99671 * 179.72159 * 17 16 14 20 20 N 1.31411 * 119.99899 * 180.27617 * 19 17 16 21 21 Si 1.86800 * 120.00160 * 0.27431 * 19 17 16 22 22 H 1.48508 * 109.46685 * 89.99768 * 21 19 17 23 23 H 1.48494 * 109.47357 * 209.99847 * 21 19 17 24 24 H 1.48494 * 109.47227 * 330.00365 * 21 19 17 25 25 C 1.54631 * 101.79770 * 25.39970 * 5 4 3 26 26 C 1.34422 * 124.34658 * 269.97388 * 3 2 1 27 27 O 1.21283 * 124.94350 * 0.41117 * 26 3 2 28 28 H 1.09004 * 109.47005 * 60.00382 * 1 2 3 29 29 H 1.09000 * 109.47357 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47263 * 300.00639 * 1 2 3 31 31 H 1.08998 * 109.47429 * 239.99779 * 2 1 3 32 32 H 1.09001 * 109.47113 * 119.99094 * 2 1 3 33 33 H 1.08996 * 110.24508 * 43.95541 * 4 3 2 34 34 H 1.09006 * 110.31652 * 282.00070 * 4 3 2 35 35 H 0.97000 * 120.00518 * 0.02562 * 9 7 5 36 36 H 1.09006 * 109.46894 * 60.00278 * 10 9 7 37 37 H 1.08997 * 109.47291 * 300.00732 * 10 9 7 38 38 H 1.08997 * 109.47529 * 60.00390 * 11 10 9 39 39 H 1.08999 * 109.47191 * 299.99920 * 11 10 9 40 40 H 1.00894 * 111.00401 * 56.04877 * 12 11 10 41 41 H 1.09004 * 109.47131 * 60.00016 * 13 12 11 42 42 H 1.08994 * 109.47471 * 299.99766 * 13 12 11 43 43 H 0.97000 * 119.99715 * 359.97438 * 16 14 13 44 44 H 0.97005 * 120.00019 * 180.02562 * 20 19 17 45 45 H 1.08995 * 110.48745 * 93.90063 * 25 5 4 46 46 H 1.09007 * 110.48012 * 216.53852 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1621 1.2116 5 6 3.1749 3.3438 0.7486 6 1 4.2335 3.1031 0.8456 7 6 2.8380 4.5988 1.5121 8 8 2.0110 4.5658 2.3986 9 7 3.4558 5.7578 1.2095 10 6 3.1280 6.9780 1.9512 11 6 3.9641 8.1413 1.4144 12 7 3.6358 9.3646 2.1586 13 6 4.4220 10.5052 1.6697 14 6 4.0583 11.7392 2.4545 15 8 3.2265 11.6748 3.3349 16 7 4.6575 12.9145 2.1782 17 6 4.3270 14.0370 2.8925 18 1 3.5869 13.9795 3.6770 19 6 4.9489 15.2474 2.6115 20 7 4.6361 16.3222 3.2999 21 14 6.2296 15.3468 1.2553 22 1 5.5638 15.6743 -0.0311 23 1 7.2181 16.4049 1.5844 24 1 6.9248 14.0402 1.1342 25 6 2.7711 3.4755 -0.7382 26 6 2.2715 2.0961 -1.1098 27 8 2.1224 1.6939 -2.2443 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.8319 1.5531 1.9384 34 1 1.3643 2.5313 1.6440 35 1 4.1170 5.7844 0.5003 36 1 3.3479 6.8305 3.0086 37 1 2.0688 7.2042 1.8286 38 1 3.7447 8.2890 0.3570 39 1 5.0232 7.9148 1.5376 40 1 3.7698 9.2319 3.1497 41 1 4.2058 10.6696 0.6140 42 1 5.4841 10.2947 1.7946 43 1 5.3230 12.9659 1.4744 44 1 5.0700 17.1673 3.1035 45 1 1.9768 4.2128 -0.8540 46 1 3.6351 3.7455 -1.3456 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128644415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:56 Heat of formation + Delta-G solvation = -99.103688 kcal Electronic energy + Delta-G solvation = -26410.866042 eV Core-core repulsion = 22335.603600 eV Total energy + Delta-G solvation = -4075.262441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.31760 -39.70521 -38.55343 -36.89957 -36.39824 -34.65808 -34.35367 -33.83853 -31.70606 -30.60224 -29.33664 -28.23880 -26.36806 -24.56079 -23.71485 -23.09007 -22.22021 -20.62443 -19.84186 -19.44309 -18.45367 -18.09693 -17.27440 -16.57702 -16.31836 -16.17146 -15.93334 -15.74311 -15.34787 -14.95453 -14.58417 -14.35289 -14.20590 -14.08632 -13.93941 -13.81549 -13.62686 -13.32698 -13.10825 -12.76409 -12.60922 -12.46862 -12.35306 -12.12029 -11.94052 -11.91063 -11.65268 -11.59345 -11.55309 -11.18622 -10.62993 -10.55064 -10.13146 -10.00662 -9.60971 -9.46587 -9.23063 -8.67925 -8.29866 -8.21109 -6.34068 -3.85808 2.08005 2.15283 2.35633 2.70381 2.98848 3.04082 3.12477 3.64987 3.68879 3.75169 4.04346 4.07761 4.21952 4.30795 4.50124 4.57556 4.67889 4.73581 4.74714 4.87605 4.93970 4.95180 5.00750 5.13270 5.18254 5.21374 5.23965 5.35226 5.38551 5.50835 5.67037 5.70698 5.70820 5.75994 5.86954 6.00209 6.02276 6.58549 6.89797 7.03481 7.41241 7.54352 7.66923 7.75324 8.10934 8.55952 8.91620 9.38715 9.78253 10.78954 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.034460 B = 0.001577 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.339347 B =17752.389824 C =18249.769712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.122 3.878 3 N -0.619 5.619 4 C 0.117 3.883 5 C -0.124 4.124 6 H 0.120 0.880 7 C 0.525 3.475 8 O -0.529 6.529 9 N -0.724 5.724 10 C 0.119 3.881 11 C 0.049 3.951 12 N -0.665 5.665 13 C 0.050 3.950 14 C 0.448 3.552 15 O -0.564 6.564 16 N -0.589 5.589 17 C -0.307 4.307 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.880 5.880 21 Si 0.881 3.119 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.270 1.270 25 C -0.146 4.146 26 C 0.520 3.480 27 O -0.529 6.529 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.402 0.598 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.034 0.966 40 H 0.354 0.646 41 H 0.089 0.911 42 H 0.046 0.954 43 H 0.371 0.629 44 H 0.274 0.726 45 H 0.111 0.889 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 -31.455 -8.772 32.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.354 5.354 4 C -0.007 4.007 5 C -0.146 4.146 6 H 0.138 0.862 7 C 0.310 3.690 8 O -0.405 6.405 9 N -0.376 5.376 10 C -0.005 4.005 11 C -0.081 4.081 12 N -0.299 5.299 13 C -0.083 4.083 14 C 0.234 3.766 15 O -0.445 6.445 16 N -0.229 5.229 17 C -0.435 4.435 18 H 0.138 0.862 19 C -0.161 4.161 20 N -0.520 5.520 21 Si 0.707 3.293 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.186 4.186 26 C 0.307 3.693 27 O -0.405 6.405 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.236 0.764 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.174 0.826 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.129 0.871 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.115 -31.408 -8.444 32.524 hybrid contribution 2.346 0.218 -0.960 2.544 sum 2.231 -31.190 -9.404 32.653 Atomic orbital electron populations 1.22173 0.95544 1.02527 1.02744 1.21376 0.94638 0.80644 1.03254 1.48372 1.65841 1.14047 1.07143 1.21987 1.00630 0.91070 0.86973 1.22249 1.02867 0.94170 0.95322 0.86212 1.20011 0.81153 0.84247 0.83615 1.90764 1.32881 1.85486 1.31357 1.45865 1.43776 1.08835 1.39080 1.21334 1.01042 0.82091 0.96040 1.22083 0.96791 0.89756 0.99485 1.59922 1.58809 1.01878 1.09254 1.21702 0.95300 0.91062 1.00222 1.19666 0.85631 0.84072 0.87264 1.90579 1.34906 1.85016 1.34035 1.42196 1.37906 1.08673 1.34097 1.19442 1.23065 0.84533 1.16489 0.86243 1.25045 0.98044 0.95182 0.97846 1.69623 1.42500 1.00004 1.39860 0.86660 0.81772 0.78379 0.82476 1.19575 1.20176 1.19572 1.22378 1.04446 0.96995 0.94788 1.20745 0.76905 0.87183 0.84462 1.90750 1.53683 1.75025 1.21032 0.92177 0.91264 0.92142 0.89891 0.90128 0.89569 0.88890 0.76420 0.91063 0.89908 0.90357 0.94833 0.82600 0.89309 0.93578 0.79679 0.91573 0.87099 0.86972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 37.16 0.38 -0.58 16 2 C 0.12 0.68 6.65 -4.04 -0.03 0.65 16 3 N -0.62 -4.21 2.93 -172.39 -0.51 -4.72 16 4 C 0.12 0.65 6.69 -3.12 -0.02 0.63 16 5 C -0.12 -0.59 3.54 -90.14 -0.32 -0.91 16 6 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 7 C 0.53 4.06 7.06 -10.98 -0.08 3.98 16 8 O -0.53 -6.34 15.53 5.56 0.09 -6.26 16 9 N -0.72 -4.65 5.54 -60.29 -0.33 -4.99 16 10 C 0.12 1.08 5.93 -4.04 -0.02 1.05 16 11 C 0.05 0.45 5.80 -3.83 -0.02 0.43 16 12 N -0.67 -9.29 6.13 -115.06 -0.70 -10.00 16 13 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16 14 C 0.45 9.84 7.82 -10.98 -0.09 9.76 16 15 O -0.56 -14.86 15.78 5.55 0.09 -14.77 16 16 N -0.59 -13.67 5.09 -10.96 -0.06 -13.73 16 17 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 18 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 19 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 20 N -0.88 -25.44 13.96 55.50 0.77 -24.67 16 21 Si 0.88 18.95 27.74 -169.99 -4.72 14.24 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.24 6.51 56.52 0.37 -4.87 16 25 C -0.15 -0.77 6.40 -26.71 -0.17 -0.94 16 26 C 0.52 4.50 8.02 -10.83 -0.09 4.42 16 27 O -0.53 -6.69 17.59 5.55 0.10 -6.60 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.52 7.93 -51.93 -0.41 0.11 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.68 7.00 -51.93 -0.36 0.31 16 35 H 0.40 1.39 8.47 -40.82 -0.35 1.05 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.35 5.18 8.43 -39.29 -0.33 4.85 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.37 7.46 5.76 -40.82 -0.24 7.23 16 44 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.11 0.63 7.89 -51.93 -0.41 0.22 16 46 H 0.11 0.38 8.14 -51.92 -0.42 -0.04 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -37.20 388.04 -7.30 -44.51 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -7.15 Total: 9.60 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -0.73 Total: 11.54 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.83 Total: -58.10 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: 0.27 Total: -27.62 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.72 Total: 14.24 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.20 -7.30 -44.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128644415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.598 kcal (2) G-P(sol) polarization free energy of solvation -37.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds