Wall clock time and date at job start Tue Mar 31 2020 05:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47011 * 2 1 4 4 C 1.46762 * 124.35418 * 89.99946 * 3 2 1 5 5 C 1.54477 * 105.47435 * 162.95955 * 4 3 2 6 6 H 1.08999 * 110.97548 * 267.25813 * 5 4 3 7 7 C 1.50708 * 110.96670 * 143.53223 * 5 4 3 8 8 O 1.21280 * 120.00140 * 3.08972 * 7 5 4 9 9 N 1.34779 * 119.99519 * 183.08849 * 7 5 4 10 10 C 1.46503 * 119.99777 * 179.97438 * 9 7 5 11 11 C 1.52993 * 109.47198 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46980 * 180.02562 * 11 10 9 13 13 C 1.46902 * 110.99844 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.47027 * 179.97438 * 13 12 11 15 15 O 1.21293 * 120.00255 * 0.02562 * 14 13 12 16 16 N 1.34783 * 120.00004 * 180.02562 * 14 13 12 17 17 C 1.37092 * 119.99804 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00499 * 0.02562 * 17 16 14 19 19 C 1.38956 * 119.99671 * 179.72159 * 17 16 14 20 20 N 1.31411 * 119.99899 * 180.27617 * 19 17 16 21 21 Si 1.86800 * 120.00160 * 0.27431 * 19 17 16 22 22 H 1.48508 * 109.46685 * 89.99768 * 21 19 17 23 23 H 1.48494 * 109.47357 * 209.99847 * 21 19 17 24 24 H 1.48494 * 109.47227 * 330.00365 * 21 19 17 25 25 C 1.54631 * 101.79770 * 25.39970 * 5 4 3 26 26 C 1.34422 * 124.34658 * 269.97388 * 3 2 1 27 27 O 1.21283 * 124.94350 * 0.41117 * 26 3 2 28 28 H 1.09004 * 109.47005 * 60.00382 * 1 2 3 29 29 H 1.09000 * 109.47357 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47263 * 300.00639 * 1 2 3 31 31 H 1.08998 * 109.47429 * 239.99779 * 2 1 3 32 32 H 1.09001 * 109.47113 * 119.99094 * 2 1 3 33 33 H 1.08996 * 110.24508 * 43.95541 * 4 3 2 34 34 H 1.09006 * 110.31652 * 282.00070 * 4 3 2 35 35 H 0.97000 * 120.00518 * 0.02562 * 9 7 5 36 36 H 1.09006 * 109.46894 * 60.00278 * 10 9 7 37 37 H 1.08997 * 109.47291 * 300.00732 * 10 9 7 38 38 H 1.08997 * 109.47529 * 60.00390 * 11 10 9 39 39 H 1.08999 * 109.47191 * 299.99920 * 11 10 9 40 40 H 1.00894 * 111.00401 * 56.04877 * 12 11 10 41 41 H 1.09004 * 109.47131 * 60.00016 * 13 12 11 42 42 H 1.08994 * 109.47471 * 299.99766 * 13 12 11 43 43 H 0.97000 * 119.99715 * 359.97438 * 16 14 13 44 44 H 0.97005 * 120.00019 * 180.02562 * 20 19 17 45 45 H 1.08995 * 110.48745 * 93.90063 * 25 5 4 46 46 H 1.09007 * 110.48012 * 216.53852 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1621 1.2116 5 6 3.1749 3.3438 0.7486 6 1 4.2335 3.1031 0.8456 7 6 2.8380 4.5988 1.5121 8 8 2.0110 4.5658 2.3986 9 7 3.4558 5.7578 1.2095 10 6 3.1280 6.9780 1.9512 11 6 3.9641 8.1413 1.4144 12 7 3.6358 9.3646 2.1586 13 6 4.4220 10.5052 1.6697 14 6 4.0583 11.7392 2.4545 15 8 3.2265 11.6748 3.3349 16 7 4.6575 12.9145 2.1782 17 6 4.3270 14.0370 2.8925 18 1 3.5869 13.9795 3.6770 19 6 4.9489 15.2474 2.6115 20 7 4.6361 16.3222 3.2999 21 14 6.2296 15.3468 1.2553 22 1 5.5638 15.6743 -0.0311 23 1 7.2181 16.4049 1.5844 24 1 6.9248 14.0402 1.1342 25 6 2.7711 3.4755 -0.7382 26 6 2.2715 2.0961 -1.1098 27 8 2.1224 1.6939 -2.2443 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.8319 1.5531 1.9384 34 1 1.3643 2.5313 1.6440 35 1 4.1170 5.7844 0.5003 36 1 3.3479 6.8305 3.0086 37 1 2.0688 7.2042 1.8286 38 1 3.7447 8.2890 0.3570 39 1 5.0232 7.9148 1.5376 40 1 3.7698 9.2319 3.1497 41 1 4.2058 10.6696 0.6140 42 1 5.4841 10.2947 1.7946 43 1 5.3230 12.9659 1.4744 44 1 5.0700 17.1673 3.1035 45 1 1.9768 4.2128 -0.8540 46 1 3.6351 3.7455 -1.3456 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128644415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:55 Heat of formation + Delta-G solvation = -131.725971 kcal Electronic energy + Delta-G solvation = -26412.280650 eV Core-core repulsion = 22335.603600 eV Total energy + Delta-G solvation = -4076.677050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.88722 -40.42025 -40.23081 -37.67166 -37.27224 -36.02234 -35.30017 -34.83648 -33.73457 -31.26197 -30.17621 -28.76008 -27.76158 -25.68219 -24.66767 -23.73496 -22.95760 -21.28590 -21.20967 -20.41537 -20.26733 -18.70966 -17.85599 -17.72618 -17.26643 -17.07906 -16.84251 -16.69504 -16.32682 -16.18128 -15.58036 -15.42026 -15.02811 -14.91296 -14.88995 -14.64165 -14.48280 -14.42714 -14.18799 -14.05651 -13.75634 -13.38275 -13.25139 -12.97461 -12.94371 -12.61576 -12.46982 -12.40693 -12.39219 -12.32019 -12.02249 -11.96167 -11.49952 -11.21921 -10.80748 -10.43905 -10.23777 -10.13060 -9.79551 -9.34667 -8.40066 -6.01450 1.31541 1.38049 1.46123 1.46775 1.54701 1.81763 1.97516 2.13011 2.24939 2.82361 3.16107 3.16939 3.31405 3.50903 3.77997 3.88199 3.93915 4.09354 4.14537 4.19137 4.21142 4.23386 4.44888 4.47813 4.51918 4.53848 4.61757 4.63655 4.74507 4.79146 4.91268 4.92743 4.96237 5.00825 5.22607 5.37341 5.52699 5.53790 5.89947 6.03129 6.04146 6.34524 6.51883 6.60933 6.89543 7.06127 7.21578 7.41184 7.98493 8.77665 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.034460 B = 0.001577 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.339347 B =17752.389824 C =18249.769712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.616 5.616 4 C 0.114 3.886 5 C -0.107 4.107 6 H 0.157 0.843 7 C 0.525 3.475 8 O -0.577 6.577 9 N -0.707 5.707 10 C 0.125 3.875 11 C 0.058 3.942 12 N -0.692 5.692 13 C 0.066 3.934 14 C 0.445 3.555 15 O -0.617 6.617 16 N -0.590 5.590 17 C -0.331 4.331 18 H 0.053 0.947 19 C -0.016 4.016 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.258 1.258 23 H -0.277 1.277 24 H -0.227 1.227 25 C -0.137 4.137 26 C 0.509 3.491 27 O -0.578 6.578 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.421 0.579 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.346 0.654 41 H 0.119 0.881 42 H 0.084 0.916 43 H 0.391 0.609 44 H 0.279 0.721 45 H 0.107 0.893 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.068 -33.342 -11.261 35.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.349 5.349 4 C -0.009 4.009 5 C -0.129 4.129 6 H 0.174 0.826 7 C 0.311 3.689 8 O -0.456 6.456 9 N -0.360 5.360 10 C 0.001 3.999 11 C -0.071 4.071 12 N -0.325 5.325 13 C -0.066 4.066 14 C 0.233 3.767 15 O -0.502 6.502 16 N -0.232 5.232 17 C -0.461 4.461 18 H 0.071 0.929 19 C -0.215 4.215 20 N -0.576 5.576 21 Si 0.787 3.213 22 H -0.182 1.182 23 H -0.202 1.202 24 H -0.150 1.150 25 C -0.177 4.177 26 C 0.297 3.703 27 O -0.458 6.458 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.258 0.742 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.164 0.836 41 H 0.137 0.863 42 H 0.102 0.898 43 H 0.227 0.773 44 H 0.088 0.912 45 H 0.125 0.875 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.297 -33.333 -10.950 35.240 hybrid contribution 1.137 0.739 -0.050 1.357 sum 4.433 -32.594 -11.000 34.685 Atomic orbital electron populations 1.22135 0.95793 1.03250 1.01388 1.21534 0.94453 0.80382 1.04158 1.48532 1.64792 1.14421 1.07194 1.22063 1.00332 0.91716 0.86770 1.22216 1.04596 0.92006 0.94051 0.82566 1.20490 0.80191 0.85154 0.83021 1.90758 1.34988 1.86211 1.33664 1.45670 1.43765 1.07599 1.38993 1.21073 0.99686 0.83345 0.95832 1.22093 0.98167 0.87371 0.99491 1.59890 1.59707 1.03582 1.09300 1.21620 0.97353 0.87654 1.00010 1.21104 0.83638 0.85571 0.86384 1.90559 1.37001 1.86140 1.36475 1.42014 1.38909 1.07810 1.34437 1.19014 1.23097 0.87315 1.16639 0.92895 1.26159 1.00578 0.93734 1.00980 1.69815 1.44388 1.01032 1.42391 0.85331 0.77811 0.80349 0.77786 1.18228 1.20204 1.15010 1.22379 1.05265 0.94713 0.95367 1.21326 0.76443 0.88421 0.84061 1.90719 1.55970 1.76228 1.22874 0.94619 0.89586 0.92257 0.90762 0.87384 0.87292 0.90867 0.74155 0.92381 0.92531 0.88583 0.91998 0.83550 0.86321 0.89844 0.77325 0.91171 0.87519 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.24 71.98 0.74 -1.11 16 2 C 0.12 1.18 6.65 86.38 0.57 1.75 16 3 N -0.62 -7.64 2.93 -817.91 -2.40 -10.04 16 4 C 0.11 1.06 6.69 86.83 0.58 1.64 16 5 C -0.11 -0.70 3.54 -10.48 -0.04 -0.73 16 6 H 0.16 -0.03 8.14 -2.39 -0.02 -0.05 16 7 C 0.53 7.04 7.06 87.66 0.62 7.66 16 8 O -0.58 -13.60 15.53 -3.03 -0.05 -13.65 16 9 N -0.71 -7.01 5.54 -463.05 -2.57 -9.58 16 10 C 0.13 2.06 5.93 86.38 0.51 2.57 16 11 C 0.06 0.84 5.80 86.30 0.50 1.34 16 12 N -0.69 -17.77 6.13 -517.94 -3.17 -20.94 16 13 C 0.07 1.76 6.17 85.56 0.53 2.29 16 14 C 0.44 19.27 7.82 87.66 0.69 19.96 16 15 O -0.62 -33.73 15.78 -3.07 -0.05 -33.78 16 16 N -0.59 -26.87 5.09 -306.97 -1.56 -28.43 16 17 C -0.33 -19.20 10.16 84.04 0.85 -18.35 16 18 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 19 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 20 N -0.94 -56.08 13.96 21.66 0.30 -55.77 16 21 Si 0.97 37.63 27.74 68.60 1.90 39.53 16 22 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 23 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.23 -7.20 6.51 99.48 0.65 -6.55 16 25 C -0.14 -1.12 6.40 30.61 0.20 -0.92 16 26 C 0.51 8.33 8.02 87.92 0.71 9.04 16 27 O -0.58 -14.72 17.59 -3.04 -0.05 -14.77 16 28 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.90 7.93 -2.39 -0.02 0.89 16 32 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 1.03 7.00 -2.38 -0.02 1.01 16 35 H 0.42 1.02 8.47 -92.71 -0.79 0.23 16 36 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.35 9.82 8.43 -89.70 -0.76 9.06 16 41 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.39 14.38 5.76 -92.71 -0.53 13.85 16 44 H 0.28 15.25 8.31 -92.70 -0.77 14.48 16 45 H 0.11 1.01 7.89 -2.39 -0.02 1.00 16 46 H 0.14 0.40 8.14 -2.38 -0.02 0.38 16 Total: -1.00 -90.76 388.04 -1.84 -92.60 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -1.11 Total: 30.10 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: 6.92 Total: 24.73 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -9.40 Total: -124.76 kcal Atomic # 8 Polarization: -62.05 SS G_CDS: -0.15 Total: -62.20 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 1.90 Total: 39.53 kcal Total: -90.76 -1.84 -92.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128644415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.129 kcal (2) G-P(sol) polarization free energy of solvation -90.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds