Wall clock time and date at job start Tue Mar 31 2020 05:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21282 * 120.00108 * 2 1 4 4 N 1.34773 * 120.00259 * 179.97438 * 2 1 3 5 5 C 1.47027 * 125.64647 * 359.97294 * 4 2 1 6 6 C 1.54325 * 107.26964 * 178.98603 * 5 4 2 7 7 C 1.55151 * 102.94276 * 337.80691 * 6 5 4 8 8 H 1.08993 * 111.00834 * 277.38695 * 7 6 5 9 9 C 1.50708 * 111.00034 * 153.57449 * 7 6 5 10 10 O 1.21280 * 120.00140 * 0.02562 * 9 7 6 11 11 N 1.34779 * 119.99519 * 180.02562 * 9 7 6 12 12 C 1.46503 * 119.99777 * 179.97438 * 11 9 7 13 13 C 1.52993 * 109.47198 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.46980 * 180.02562 * 13 12 11 15 15 C 1.46902 * 110.99844 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47027 * 179.97438 * 15 14 13 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00004 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99804 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00499 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99671 * 179.72159 * 19 18 16 22 22 N 1.31414 * 120.00152 * 0.27554 * 21 19 18 23 23 Si 1.86803 * 119.99914 * 180.27723 * 21 19 18 24 24 H 1.48496 * 109.47187 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 119.99961 * 23 21 19 26 26 H 1.48498 * 109.47018 * 240.00007 * 23 21 19 27 27 C 1.47426 * 125.65017 * 180.02562 * 4 2 1 28 28 H 1.08994 * 109.46697 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46636 * 300.00526 * 1 2 3 30 30 H 1.08999 * 109.47003 * 60.00055 * 1 2 3 31 31 H 1.08999 * 109.88024 * 59.57128 * 5 4 2 32 32 H 1.08993 * 109.88341 * 298.40592 * 5 4 2 33 33 H 1.09005 * 110.71782 * 219.44672 * 6 5 4 34 34 H 1.09001 * 110.71910 * 96.17668 * 6 5 4 35 35 H 0.97000 * 120.00518 * 0.02562 * 11 9 7 36 36 H 1.09006 * 109.46894 * 60.00278 * 12 11 9 37 37 H 1.08997 * 109.47291 * 300.00732 * 12 11 9 38 38 H 1.08997 * 109.47529 * 60.00390 * 13 12 11 39 39 H 1.08999 * 109.47191 * 299.99920 * 13 12 11 40 40 H 1.00894 * 111.00401 * 56.04877 * 14 13 12 41 41 H 1.09004 * 109.47131 * 60.00016 * 15 14 13 42 42 H 1.08994 * 109.47471 * 299.99766 * 15 14 13 43 43 H 0.97000 * 119.99715 * 359.97438 * 18 16 15 44 44 H 0.96991 * 119.99827 * 179.97438 * 22 21 19 45 45 H 1.08996 * 110.36846 * 85.24499 * 27 4 2 46 46 H 1.08999 * 110.36244 * 322.91457 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.5747 -2.5066 0.0017 6 6 2.7282 -3.5315 -0.0242 7 6 3.9083 -2.7119 -0.6095 8 1 3.8595 -2.6792 -1.6978 9 6 5.2318 -3.2652 -0.1474 10 8 5.2627 -4.2305 0.5862 11 7 6.3811 -2.6872 -0.5495 12 6 7.6677 -3.2247 -0.0999 13 6 8.8045 -2.3924 -0.6964 14 7 10.0945 -2.9317 -0.2460 15 6 11.2119 -2.1561 -0.8009 16 6 12.5157 -2.7372 -0.3175 17 8 12.5143 -3.7028 0.4165 18 7 13.6834 -2.1839 -0.7009 19 6 14.8694 -2.7129 -0.2616 20 1 14.8682 -3.5732 0.3913 21 6 16.0734 -2.1460 -0.6616 22 7 16.0750 -1.0995 -1.4565 23 14 17.6897 -2.8715 -0.0692 24 1 17.4166 -4.0367 0.8098 25 1 18.4933 -3.3103 -1.2384 26 1 18.4440 -1.8437 0.6922 27 6 3.6481 -1.3122 0.0011 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.9486 -2.6308 -0.8818 32 1 0.9780 -2.6427 0.9036 33 1 2.4828 -4.3720 -0.6736 34 1 2.9603 -3.8764 0.9835 35 1 6.3564 -1.9150 -1.1360 36 1 7.7641 -4.2594 -0.4290 37 1 7.7185 -3.1832 0.9881 38 1 8.7083 -1.3576 -0.3678 39 1 8.7534 -2.4345 -1.7844 40 1 10.1805 -3.9088 -0.4826 41 1 11.1328 -1.1195 -0.4730 42 1 11.1772 -2.1965 -1.8895 43 1 13.6846 -1.4119 -1.2882 44 1 16.9154 -0.7037 -1.7353 45 1 4.0335 -1.2650 1.0196 46 1 4.1060 -0.5384 -0.6151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149312614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:35 Heat of formation + Delta-G solvation = -106.494065 kcal Electronic energy + Delta-G solvation = -26319.469997 eV Core-core repulsion = 22243.887084 eV Total energy + Delta-G solvation = -4075.582912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91569 -39.71518 -38.35195 -37.57137 -36.32311 -34.45164 -33.77701 -32.72434 -31.25348 -30.40182 -30.01127 -28.76210 -26.10509 -24.55376 -23.89853 -22.69723 -22.03970 -20.38154 -19.84188 -19.29434 -18.02043 -17.87743 -17.57105 -16.53950 -16.27922 -16.00920 -15.96750 -15.78739 -15.24422 -14.90039 -14.52873 -14.29509 -14.15553 -13.94925 -13.78175 -13.49752 -13.31957 -13.26883 -13.18837 -13.03015 -12.51521 -12.43631 -12.15892 -12.00571 -11.79309 -11.54261 -11.48429 -11.46334 -11.42965 -11.06018 -10.45560 -10.34842 -10.23934 -10.15317 -9.53559 -9.36034 -9.23153 -8.52573 -8.15519 -7.97993 -6.43260 -3.84074 2.12135 2.18914 2.43580 2.80202 3.15842 3.26697 3.34172 3.72879 3.88055 3.90814 4.10467 4.27168 4.28222 4.39699 4.56505 4.62511 4.65244 4.71811 4.84431 4.89901 4.94903 4.97237 5.14612 5.16063 5.24502 5.26309 5.28560 5.34893 5.39439 5.55288 5.69676 5.70625 5.77850 5.86325 5.92085 6.09692 6.23294 6.94681 7.05173 7.15542 7.53936 7.54433 7.64624 7.86322 8.04775 8.59307 9.16465 9.52239 10.03452 10.74509 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.030003 B = 0.001546 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.001313 B =18104.393659 C =18826.534080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.527 3.473 3 O -0.544 6.544 4 N -0.621 5.621 5 C 0.099 3.901 6 C -0.113 4.113 7 C -0.126 4.126 8 H 0.112 0.888 9 C 0.525 3.475 10 O -0.531 6.531 11 N -0.725 5.725 12 C 0.119 3.881 13 C 0.049 3.951 14 N -0.665 5.665 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.117 3.883 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.401 0.599 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.033 0.967 40 H 0.352 0.648 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.075 0.925 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.293 0.460 -3.225 32.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.316 3.684 3 O -0.421 6.421 4 N -0.357 5.357 5 C -0.024 4.024 6 C -0.151 4.151 7 C -0.148 4.148 8 H 0.130 0.870 9 C 0.309 3.691 10 O -0.406 6.406 11 N -0.377 5.377 12 C -0.005 4.005 13 C -0.081 4.081 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.006 4.006 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.235 0.765 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.172 0.828 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -31.821 0.192 -1.664 31.865 hybrid contribution 0.902 0.290 -1.450 1.732 sum -30.918 0.482 -3.114 31.079 Atomic orbital electron populations 1.21882 0.91066 1.04466 1.05471 1.20571 0.90481 0.81869 0.75433 1.90759 1.70695 1.30613 1.50014 1.48581 1.07004 1.06149 1.73960 1.22164 0.96609 0.81347 1.02306 1.22569 0.91694 0.96928 1.03922 1.22548 0.93397 0.96314 1.02564 0.87006 1.20088 0.84954 0.83516 0.80497 1.90747 1.87362 1.26672 1.35850 1.45944 1.06039 1.34056 1.51684 1.21322 0.80626 0.97660 1.00853 1.22083 0.89474 0.99481 0.97099 1.59937 0.99390 1.07565 1.62953 1.21673 0.90775 0.98608 0.96984 1.19774 0.84672 0.86990 0.86064 1.90534 1.86991 1.29108 1.39989 1.41862 1.04632 1.29368 1.44113 1.19770 0.82242 1.13401 1.27504 0.87811 1.25270 0.99744 0.96208 0.96713 1.69618 1.28059 1.21986 1.34632 0.85790 0.81061 0.78981 0.78463 1.19184 1.20771 1.20728 1.22095 0.81477 0.95261 1.01757 0.90387 0.88548 0.88552 0.90781 0.90640 0.89111 0.88695 0.76481 0.91198 0.90024 0.90386 0.94898 0.82813 0.89435 0.93696 0.77452 0.91908 0.90632 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.21 36.01 0.37 -0.30 16 2 C 0.53 4.34 7.96 -10.99 -0.09 4.25 16 3 O -0.54 -7.00 17.36 5.56 0.10 -6.90 16 4 N -0.62 -4.14 3.33 -170.52 -0.57 -4.71 16 5 C 0.10 0.38 5.81 -3.06 -0.02 0.36 16 6 C -0.11 -0.58 6.08 -24.90 -0.15 -0.73 16 7 C -0.13 -0.74 3.43 -89.62 -0.31 -1.05 16 8 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 9 C 0.52 4.83 7.14 -10.98 -0.08 4.75 16 10 O -0.53 -7.05 15.71 5.56 0.09 -6.97 16 11 N -0.73 -5.90 5.56 -60.29 -0.33 -6.23 16 12 C 0.12 1.26 5.93 -4.04 -0.02 1.24 16 13 C 0.05 0.53 5.80 -3.83 -0.02 0.51 16 14 N -0.67 -10.30 6.13 -115.06 -0.70 -11.01 16 15 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 16 C 0.44 10.31 7.82 -10.98 -0.09 10.22 16 17 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 18 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 22 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 23 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.12 0.81 6.36 -2.53 -0.02 0.80 16 28 H 0.08 0.14 6.60 -51.93 -0.34 -0.20 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.15 8.02 -51.93 -0.42 -0.26 16 32 H 0.08 0.21 8.09 -51.93 -0.42 -0.21 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.65 7.39 -51.93 -0.38 0.27 16 35 H 0.40 2.20 8.47 -40.82 -0.35 1.85 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.35 5.64 8.43 -39.29 -0.33 5.31 16 41 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.08 0.61 8.03 -51.93 -0.42 0.20 16 46 H 0.09 0.61 8.04 -51.93 -0.42 0.19 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -36.77 388.82 -7.66 -44.43 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -7.13 Total: 10.34 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: -0.69 Total: 12.89 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.94 Total: -59.93 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: 0.27 Total: -29.60 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.77 -7.66 -44.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149312614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.066 kcal (2) G-P(sol) polarization free energy of solvation -36.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds