Wall clock time and date at job start Tue Mar 31 2020 05:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21282 * 120.00108 * 2 1 4 4 N 1.34773 * 120.00259 * 179.97438 * 2 1 3 5 5 C 1.47027 * 125.64647 * 359.97294 * 4 2 1 6 6 C 1.54325 * 107.26964 * 178.98603 * 5 4 2 7 7 C 1.55151 * 102.94276 * 337.80691 * 6 5 4 8 8 H 1.08993 * 111.00834 * 277.38695 * 7 6 5 9 9 C 1.50708 * 111.00034 * 153.57449 * 7 6 5 10 10 O 1.21280 * 120.00140 * 0.02562 * 9 7 6 11 11 N 1.34779 * 119.99519 * 180.02562 * 9 7 6 12 12 C 1.46503 * 119.99777 * 179.97438 * 11 9 7 13 13 C 1.52993 * 109.47198 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.46980 * 180.02562 * 13 12 11 15 15 C 1.46902 * 110.99844 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47027 * 179.97438 * 15 14 13 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00004 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99804 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00499 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99671 * 179.72159 * 19 18 16 22 22 N 1.31414 * 120.00152 * 0.27554 * 21 19 18 23 23 Si 1.86803 * 119.99914 * 180.27723 * 21 19 18 24 24 H 1.48496 * 109.47187 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 119.99961 * 23 21 19 26 26 H 1.48498 * 109.47018 * 240.00007 * 23 21 19 27 27 C 1.47426 * 125.65017 * 180.02562 * 4 2 1 28 28 H 1.08994 * 109.46697 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46636 * 300.00526 * 1 2 3 30 30 H 1.08999 * 109.47003 * 60.00055 * 1 2 3 31 31 H 1.08999 * 109.88024 * 59.57128 * 5 4 2 32 32 H 1.08993 * 109.88341 * 298.40592 * 5 4 2 33 33 H 1.09005 * 110.71782 * 219.44672 * 6 5 4 34 34 H 1.09001 * 110.71910 * 96.17668 * 6 5 4 35 35 H 0.97000 * 120.00518 * 0.02562 * 11 9 7 36 36 H 1.09006 * 109.46894 * 60.00278 * 12 11 9 37 37 H 1.08997 * 109.47291 * 300.00732 * 12 11 9 38 38 H 1.08997 * 109.47529 * 60.00390 * 13 12 11 39 39 H 1.08999 * 109.47191 * 299.99920 * 13 12 11 40 40 H 1.00894 * 111.00401 * 56.04877 * 14 13 12 41 41 H 1.09004 * 109.47131 * 60.00016 * 15 14 13 42 42 H 1.08994 * 109.47471 * 299.99766 * 15 14 13 43 43 H 0.97000 * 119.99715 * 359.97438 * 18 16 15 44 44 H 0.96991 * 119.99827 * 179.97438 * 22 21 19 45 45 H 1.08996 * 110.36846 * 85.24499 * 27 4 2 46 46 H 1.08999 * 110.36244 * 322.91457 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.5747 -2.5066 0.0017 6 6 2.7282 -3.5315 -0.0242 7 6 3.9083 -2.7119 -0.6095 8 1 3.8595 -2.6792 -1.6978 9 6 5.2318 -3.2652 -0.1474 10 8 5.2627 -4.2305 0.5862 11 7 6.3811 -2.6872 -0.5495 12 6 7.6677 -3.2247 -0.0999 13 6 8.8045 -2.3924 -0.6964 14 7 10.0945 -2.9317 -0.2460 15 6 11.2119 -2.1561 -0.8009 16 6 12.5157 -2.7372 -0.3175 17 8 12.5143 -3.7028 0.4165 18 7 13.6834 -2.1839 -0.7009 19 6 14.8694 -2.7129 -0.2616 20 1 14.8682 -3.5732 0.3913 21 6 16.0734 -2.1460 -0.6616 22 7 16.0750 -1.0995 -1.4565 23 14 17.6897 -2.8715 -0.0692 24 1 17.4166 -4.0367 0.8098 25 1 18.4933 -3.3103 -1.2384 26 1 18.4440 -1.8437 0.6922 27 6 3.6481 -1.3122 0.0011 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.9486 -2.6308 -0.8818 32 1 0.9780 -2.6427 0.9036 33 1 2.4828 -4.3720 -0.6736 34 1 2.9603 -3.8764 0.9835 35 1 6.3564 -1.9150 -1.1360 36 1 7.7641 -4.2594 -0.4290 37 1 7.7185 -3.1832 0.9881 38 1 8.7083 -1.3576 -0.3678 39 1 8.7534 -2.4345 -1.7844 40 1 10.1805 -3.9088 -0.4826 41 1 11.1328 -1.1195 -0.4730 42 1 11.1772 -2.1965 -1.8895 43 1 13.6846 -1.4119 -1.2882 44 1 16.9154 -0.7037 -1.7353 45 1 4.0335 -1.2650 1.0196 46 1 4.1060 -0.5384 -0.6151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149312614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:34 Heat of formation + Delta-G solvation = -137.717698 kcal Electronic energy + Delta-G solvation = -26320.823955 eV Core-core repulsion = 22243.887084 eV Total energy + Delta-G solvation = -4076.936871 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.53706 -40.44837 -40.15055 -38.23765 -37.42664 -36.01101 -35.24783 -33.34279 -33.24866 -30.95209 -30.72456 -29.50895 -27.63109 -25.76745 -24.86703 -23.45048 -22.84217 -21.11191 -21.06584 -20.33828 -19.92768 -18.65607 -18.09613 -17.79557 -17.29797 -17.12976 -16.79454 -16.63689 -16.42729 -16.08323 -15.87690 -15.53325 -15.29284 -14.95781 -14.72363 -14.48582 -14.35302 -14.06455 -13.83692 -13.68645 -13.53234 -13.36586 -13.30704 -12.97737 -12.94362 -12.63589 -12.58174 -12.42211 -12.39086 -12.30160 -12.11858 -11.86129 -11.52376 -11.16693 -10.91674 -10.37652 -10.18266 -10.02389 -9.76704 -9.39644 -8.47817 -5.96481 1.36259 1.41912 1.45296 1.55979 1.56434 1.84670 2.04043 2.11903 2.30304 3.00646 3.19607 3.25799 3.42902 3.56891 3.77034 3.85864 3.90074 4.10705 4.17030 4.19723 4.26437 4.30776 4.45130 4.48714 4.49524 4.55276 4.60400 4.63899 4.74551 4.80251 4.89046 4.94445 4.97682 5.07800 5.12803 5.24270 5.34037 5.40630 5.83321 6.06002 6.32005 6.44245 6.46527 6.59178 7.07549 7.11921 7.16038 7.55181 8.10726 8.69703 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.030003 B = 0.001546 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.001313 B =18104.393659 C =18826.534080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.518 3.482 3 O -0.602 6.602 4 N -0.621 5.621 5 C 0.099 3.901 6 C -0.113 4.113 7 C -0.112 4.112 8 H 0.140 0.860 9 C 0.523 3.477 10 O -0.576 6.576 11 N -0.713 5.713 12 C 0.127 3.873 13 C 0.057 3.943 14 N -0.686 5.686 15 C 0.068 3.932 16 C 0.435 3.565 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.115 3.885 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.417 0.583 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.346 0.654 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.057 0.943 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.022 0.793 -4.756 34.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.310 3.690 3 O -0.483 6.483 4 N -0.355 5.355 5 C -0.022 4.022 6 C -0.151 4.151 7 C -0.134 4.134 8 H 0.157 0.843 9 C 0.309 3.691 10 O -0.455 6.455 11 N -0.366 5.366 12 C 0.003 3.997 13 C -0.072 4.072 14 N -0.319 5.319 15 C -0.064 4.064 16 C 0.223 3.777 17 O -0.512 6.512 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.817 3.183 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.009 4.009 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.165 0.835 41 H 0.125 0.875 42 H 0.091 0.909 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -33.584 0.544 -3.235 33.744 hybrid contribution 1.396 0.154 -0.948 1.694 sum -32.188 0.698 -4.183 32.466 Atomic orbital electron populations 1.21915 0.87613 1.06499 1.06073 1.21385 0.92140 0.81258 0.74264 1.90727 1.72091 1.32646 1.52848 1.48708 1.06881 1.07068 1.72804 1.22364 0.96258 0.79117 1.04482 1.22583 0.91757 0.97756 1.02983 1.22502 0.91576 0.95390 1.03928 0.84253 1.20677 0.86078 0.82794 0.79546 1.90732 1.88043 1.28830 1.37858 1.45816 1.05029 1.34265 1.51473 1.21057 0.81832 0.97423 0.99414 1.22078 0.87007 0.99621 0.98482 1.59900 1.00745 1.07292 1.63966 1.21523 0.87574 0.98936 0.98400 1.20933 0.86260 0.85985 0.84561 1.90503 1.87955 1.31023 1.41688 1.41924 1.04710 1.29735 1.44578 1.19711 0.84147 1.13835 1.28812 0.90406 1.26026 1.02346 0.96348 0.96422 1.69669 1.29230 1.22376 1.34736 0.84873 0.77124 0.78135 0.78217 1.19898 1.19494 1.19637 1.22031 0.82210 0.95826 1.00809 0.87621 0.88129 0.87650 0.87793 0.89225 0.87401 0.90941 0.74605 0.92173 0.92446 0.89136 0.92379 0.83483 0.87455 0.90876 0.76863 0.91271 0.92485 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 10.21 71.24 0.73 -0.17 16 2 C 0.52 7.97 7.96 87.66 0.70 8.67 16 3 O -0.60 -15.68 17.36 -3.04 -0.05 -15.73 16 4 N -0.62 -7.28 3.33 -811.79 -2.70 -9.98 16 5 C 0.10 0.47 5.81 86.73 0.50 0.98 16 6 C -0.11 -0.94 6.08 31.78 0.19 -0.74 16 7 C -0.11 -1.14 3.43 -10.15 -0.03 -1.17 16 8 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 9 C 0.52 9.30 7.14 87.66 0.63 9.93 16 10 O -0.58 -15.58 15.71 -3.03 -0.05 -15.63 16 11 N -0.71 -10.82 5.56 -463.05 -2.57 -13.39 16 12 C 0.13 2.65 5.93 86.38 0.51 3.16 16 13 C 0.06 1.14 5.80 86.30 0.50 1.64 16 14 N -0.69 -20.63 6.13 -517.94 -3.17 -23.80 16 15 C 0.07 2.21 6.17 85.56 0.53 2.74 16 16 C 0.44 20.57 7.82 87.66 0.69 21.25 16 17 O -0.63 -34.92 15.78 -3.07 -0.05 -34.97 16 18 N -0.57 -29.21 5.29 -306.97 -1.62 -30.84 16 19 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 20 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 22 N -0.92 -49.36 13.05 21.67 0.28 -49.08 16 23 Si 0.99 43.03 29.55 68.60 2.03 45.05 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 C 0.11 1.51 6.36 86.86 0.55 2.06 16 28 H 0.11 -0.03 6.60 -2.39 -0.02 -0.04 16 29 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.10 -0.03 8.02 -2.39 -0.02 -0.05 16 32 H 0.09 0.23 8.09 -2.39 -0.02 0.21 16 33 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.07 0.97 7.39 -2.39 -0.02 0.95 16 35 H 0.42 3.71 8.47 -92.71 -0.79 2.92 16 36 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.35 11.07 8.43 -89.70 -0.76 10.31 16 41 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 44 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 45 H 0.06 0.96 8.03 -2.39 -0.02 0.94 16 46 H 0.09 1.15 8.04 -2.39 -0.02 1.13 16 Total: -1.00 -83.36 388.82 -2.38 -85.74 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -1.25 Total: 32.76 kcal Atomic # 6 Polarization: 23.10 SS G_CDS: 6.77 Total: 29.87 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -9.79 Total: -127.09 kcal Atomic # 8 Polarization: -66.19 SS G_CDS: -0.15 Total: -66.34 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -83.36 -2.38 -85.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149312614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.973 kcal (2) G-P(sol) polarization free energy of solvation -83.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds