Wall clock time and date at job start Tue Mar 31 2020 05:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 119.99912 * 2 1 4 4 N 1.34780 * 119.99762 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99328 * 180.02562 * 4 2 1 6 6 H 1.09005 * 109.46784 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47463 * 59.99970 * 5 4 2 8 8 C 1.53002 * 109.47079 * 64.99861 * 7 5 4 9 9 C 1.50697 * 109.47282 * 179.97438 * 8 7 5 10 10 N 1.34778 * 120.00511 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00143 * 0.02562 * 9 8 7 12 12 C 1.50705 * 109.46934 * 299.99704 * 5 4 2 13 13 O 1.21281 * 119.99961 * 20.00903 * 12 5 4 14 14 N 1.34774 * 119.99741 * 200.00207 * 12 5 4 15 15 C 1.47422 * 125.65171 * 359.94939 * 14 12 5 16 16 C 1.54908 * 104.83357 * 155.91447 * 15 14 12 17 17 C 1.55156 * 101.58197 * 37.01425 * 16 15 14 18 18 H 1.08997 * 110.87696 * 82.93162 * 17 16 15 19 19 N 1.46502 * 110.72097 * 206.13643 * 17 16 15 20 20 C 1.36939 * 119.99694 * 268.52016 * 19 17 16 21 21 H 1.08003 * 120.00114 * 359.97438 * 20 19 17 22 22 C 1.38812 * 119.99771 * 180.02562 * 20 19 17 23 23 N 1.31614 * 120.00138 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99715 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47004 * 90.00007 * 24 22 20 26 26 H 1.48503 * 109.46892 * 209.99560 * 24 22 20 27 27 H 1.48499 * 109.47215 * 329.99621 * 24 22 20 28 28 C 1.47031 * 125.64691 * 180.02562 * 14 12 5 29 29 H 1.08999 * 109.46992 * 239.99990 * 1 2 3 30 30 H 1.08992 * 109.47119 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.46760 * 120.00397 * 1 2 3 32 32 H 0.96992 * 120.00619 * 0.02562 * 4 2 1 33 33 H 1.09002 * 109.47225 * 184.99700 * 7 5 4 34 34 H 1.08997 * 109.47714 * 304.99847 * 7 5 4 35 35 H 1.09002 * 109.46961 * 300.00001 * 8 7 5 36 36 H 1.08999 * 109.46758 * 60.00240 * 8 7 5 37 37 H 0.97001 * 119.99052 * 359.97438 * 10 9 8 38 38 H 0.96994 * 120.00558 * 180.02562 * 10 9 8 39 39 H 1.09000 * 110.36378 * 37.07938 * 15 14 12 40 40 H 1.08998 * 110.37024 * 274.75654 * 15 14 12 41 41 H 1.08999 * 111.00895 * 278.93886 * 16 15 14 42 42 H 1.09000 * 111.04072 * 155.09810 * 16 15 14 43 43 H 0.97005 * 120.00283 * 88.51967 * 19 17 16 44 44 H 0.97001 * 119.99866 * 180.02562 * 23 22 20 45 45 H 1.08998 * 109.88059 * 61.59780 * 28 14 12 46 46 H 1.08994 * 109.87878 * 300.43060 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1671 0.0011 6 1 4.0093 -2.1948 0.0010 7 6 4.1554 -0.4456 1.2503 8 6 3.7503 -1.2355 2.4964 9 6 4.2527 -0.5252 3.7268 10 7 4.0124 -1.0414 4.9484 11 8 4.8733 0.5111 3.6179 12 6 4.1486 -0.4570 -1.2294 13 8 3.4204 0.3043 -1.8302 14 7 5.4075 -0.6679 -1.6621 15 6 6.3950 -1.5616 -1.0300 16 6 7.3784 -1.9338 -2.1675 17 6 7.4581 -0.6015 -2.9587 18 1 8.1751 0.0799 -2.5007 19 7 7.8050 -0.8508 -4.3600 20 6 9.1172 -0.8465 -4.7517 21 1 9.8963 -0.6589 -4.0277 22 6 9.4458 -1.0822 -6.0796 23 7 8.4964 -1.3103 -6.9621 24 14 11.2358 -1.0756 -6.6141 25 1 11.7940 -2.4462 -6.4914 26 1 11.3288 -0.6280 -8.0270 27 1 12.0073 -0.1475 -5.7490 28 6 6.0240 -0.0436 -2.8419 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6960 -2.0073 0.0005 33 1 5.2418 -0.3674 1.2070 34 1 3.7208 0.5529 1.2959 35 1 2.6639 -1.3138 2.5397 36 1 4.1850 -2.2340 2.4508 37 1 3.5157 -1.8701 5.0355 38 1 4.3354 -0.5840 5.7404 39 1 5.9051 -2.4557 -0.6443 40 1 6.9204 -1.0407 -0.2295 41 1 6.9735 -2.7331 -2.7881 42 1 8.3540 -2.2092 -1.7669 43 1 7.1052 -1.0189 -5.0104 44 1 8.7261 -1.4753 -7.8899 45 1 6.0562 1.0384 -2.7144 46 1 5.4539 -0.2969 -3.7357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186371054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:47 Heat of formation + Delta-G solvation = -94.091727 kcal Electronic energy + Delta-G solvation = -28527.696276 eV Core-core repulsion = 24452.651170 eV Total energy + Delta-G solvation = -4075.045107 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71477 -39.61177 -38.96630 -37.07144 -35.42057 -34.09174 -33.99701 -32.77048 -31.45822 -30.09277 -29.49348 -28.35415 -26.82287 -24.01906 -23.17649 -22.53168 -21.16802 -20.35923 -19.98580 -18.93443 -17.96034 -17.51294 -17.38319 -17.06864 -16.52729 -16.11750 -15.77862 -15.55246 -15.10929 -14.62347 -14.57150 -14.15146 -13.78384 -13.65685 -13.47895 -13.26963 -13.18774 -12.89661 -12.56027 -12.44759 -12.37251 -12.08528 -11.89017 -11.70120 -11.52409 -11.34472 -11.15375 -10.84260 -10.68577 -10.31070 -10.29807 -10.08005 -10.04437 -10.01214 -9.74692 -9.60724 -8.96648 -8.92694 -8.29673 -7.03518 -5.81202 -3.11665 2.34683 2.60409 2.80820 2.98171 3.23007 3.38665 3.41883 3.47507 3.49095 4.39430 4.45588 4.55740 4.59787 4.78167 4.84122 4.86519 5.04290 5.07445 5.12860 5.21007 5.24407 5.34123 5.39376 5.57773 5.59588 5.65425 5.73175 5.80796 5.98985 6.12690 6.17774 6.26327 6.31069 6.41410 6.42122 6.60814 6.66545 6.92243 6.95266 7.39050 7.66404 7.80702 7.94612 8.25800 8.36151 8.47702 9.47717 10.02310 10.37071 11.41063 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016690 B = 0.002762 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.292491 B =10135.112150 C =11341.414098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.511 3.489 3 O -0.507 6.507 4 N -0.726 5.726 5 C 0.139 3.861 6 H 0.107 0.893 7 C -0.119 4.119 8 C -0.136 4.136 9 C 0.514 3.486 10 N -0.860 5.860 11 O -0.535 6.535 12 C 0.514 3.486 13 O -0.515 6.515 14 N -0.613 5.613 15 C 0.097 3.903 16 C -0.154 4.154 17 C 0.172 3.828 18 H 0.067 0.933 19 N -0.715 5.715 20 C -0.244 4.244 21 H 0.073 0.927 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.102 3.898 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.402 0.598 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.400 0.600 38 H 0.400 0.600 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.064 0.936 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.829 -7.545 23.931 29.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.298 3.702 3 O -0.379 6.379 4 N -0.381 5.381 5 C 0.030 3.970 6 H 0.125 0.875 7 C -0.158 4.158 8 C -0.176 4.176 9 C 0.299 3.701 10 N -0.424 5.424 11 O -0.411 6.411 12 C 0.300 3.700 13 O -0.389 6.389 14 N -0.349 5.349 15 C -0.027 4.027 16 C -0.196 4.196 17 C 0.060 3.940 18 H 0.085 0.915 19 N -0.355 5.355 20 C -0.375 4.375 21 H 0.091 0.909 22 C -0.207 4.207 23 N -0.578 5.578 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.021 4.021 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.236 0.764 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.228 0.772 38 H 0.231 0.769 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.306 -5.605 23.278 28.418 hybrid contribution 0.429 -0.997 -0.186 1.101 sum -14.877 -6.602 23.093 28.252 Atomic orbital electron populations 1.21890 0.92048 1.05402 1.03740 1.20663 0.90263 0.83627 0.75668 1.90757 1.70162 1.31123 1.45899 1.45723 1.05327 1.09140 1.77872 1.20820 0.81675 1.00690 0.93824 0.87492 1.21682 1.02707 1.01503 0.89867 1.21616 1.02906 1.00330 0.92715 1.20728 0.78986 0.85090 0.85260 1.43916 1.60711 1.29398 1.08419 1.90802 1.39924 1.23570 1.86763 1.20314 0.80761 0.83015 0.85937 1.90749 1.55137 1.35684 1.57315 1.48459 1.11707 1.45574 1.29124 1.22430 0.90538 0.92795 0.96895 1.23554 0.98101 1.01520 0.96379 1.21191 0.91913 0.93314 0.87609 0.91500 1.42371 1.06010 1.84504 1.02645 1.19236 0.83929 1.41400 0.92949 0.90931 1.24775 0.97575 1.02357 0.96008 1.69666 1.30927 1.54754 1.02473 0.86167 0.84459 0.77617 0.77787 1.21672 1.21741 1.20655 1.22317 0.94989 0.97378 0.87456 0.89895 0.89133 0.89572 0.76371 0.89697 0.88037 0.88799 0.88657 0.77194 0.76940 0.91574 0.91522 0.90694 0.90540 0.77972 0.93374 0.91754 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 10.32 36.01 0.37 -0.89 16 2 C 0.51 6.10 6.70 -10.98 -0.07 6.03 16 3 O -0.51 -8.91 12.94 -17.93 -0.23 -9.14 16 4 N -0.73 -6.49 4.65 -54.93 -0.26 -6.75 16 5 C 0.14 1.48 2.43 -69.08 -0.17 1.31 16 6 H 0.11 0.77 6.91 -51.93 -0.36 0.41 16 7 C -0.12 -1.31 3.82 -26.73 -0.10 -1.41 16 8 C -0.14 -0.91 5.59 -27.88 -0.16 -1.07 16 9 C 0.51 4.69 8.10 -10.99 -0.09 4.60 16 10 N -0.86 -4.09 8.87 31.22 0.28 -3.81 16 11 O -0.54 -7.83 16.82 5.55 0.09 -7.73 16 12 C 0.51 8.34 6.84 -10.98 -0.08 8.27 16 13 O -0.51 -10.65 14.01 -17.93 -0.25 -10.90 16 14 N -0.61 -9.77 3.33 -170.52 -0.57 -10.34 16 15 C 0.10 1.23 6.23 -2.53 -0.02 1.22 16 16 C -0.15 -2.46 6.77 -24.58 -0.17 -2.63 16 17 C 0.17 3.35 3.61 -66.09 -0.24 3.11 16 18 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 19 N -0.72 -17.65 5.22 -51.65 -0.27 -17.92 16 20 C -0.24 -6.63 9.96 -15.06 -0.15 -6.78 16 21 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 24 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.10 1.92 6.62 -3.06 -0.02 1.90 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.40 1.93 8.83 -40.82 -0.36 1.57 16 33 H 0.08 1.02 7.36 -51.93 -0.38 0.63 16 34 H 0.10 1.56 6.00 -51.93 -0.31 1.24 16 35 H 0.09 0.47 7.75 -51.93 -0.40 0.07 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.40 0.52 8.83 -40.82 -0.36 0.16 16 38 H 0.40 1.75 8.93 -40.82 -0.36 1.39 16 39 H 0.07 0.63 6.92 -51.93 -0.36 0.27 16 40 H 0.07 0.78 7.86 -51.93 -0.41 0.37 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.39 10.25 7.56 -40.82 -0.31 9.95 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.07 1.41 7.72 -51.93 -0.40 1.01 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -40.33 378.13 -7.73 -48.06 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.94 Total: 9.68 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: -0.98 Total: 13.25 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: -0.09 Total: -66.02 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.39 Total: -27.78 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -40.33 -7.73 -48.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186371054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.032 kcal (2) G-P(sol) polarization free energy of solvation -40.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds