Wall clock time and date at job start Tue Mar 31 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 119.99912 * 2 1 4 4 N 1.34780 * 119.99762 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99328 * 180.02562 * 4 2 1 6 6 H 1.09005 * 109.46784 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47463 * 59.99970 * 5 4 2 8 8 C 1.53002 * 109.47079 * 64.99861 * 7 5 4 9 9 C 1.50697 * 109.47282 * 179.97438 * 8 7 5 10 10 N 1.34778 * 120.00511 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00143 * 0.02562 * 9 8 7 12 12 C 1.50705 * 109.46934 * 299.99704 * 5 4 2 13 13 O 1.21281 * 119.99961 * 20.00903 * 12 5 4 14 14 N 1.34774 * 119.99741 * 200.00207 * 12 5 4 15 15 C 1.47422 * 125.65171 * 359.94939 * 14 12 5 16 16 C 1.54908 * 104.83357 * 155.91447 * 15 14 12 17 17 C 1.55156 * 101.58197 * 37.01425 * 16 15 14 18 18 H 1.08997 * 110.87696 * 82.93162 * 17 16 15 19 19 N 1.46502 * 110.72097 * 206.13643 * 17 16 15 20 20 C 1.36939 * 119.99694 * 268.52016 * 19 17 16 21 21 H 1.08003 * 120.00114 * 359.97438 * 20 19 17 22 22 C 1.38812 * 119.99771 * 180.02562 * 20 19 17 23 23 N 1.31614 * 120.00138 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99715 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47004 * 90.00007 * 24 22 20 26 26 H 1.48503 * 109.46892 * 209.99560 * 24 22 20 27 27 H 1.48499 * 109.47215 * 329.99621 * 24 22 20 28 28 C 1.47031 * 125.64691 * 180.02562 * 14 12 5 29 29 H 1.08999 * 109.46992 * 239.99990 * 1 2 3 30 30 H 1.08992 * 109.47119 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.46760 * 120.00397 * 1 2 3 32 32 H 0.96992 * 120.00619 * 0.02562 * 4 2 1 33 33 H 1.09002 * 109.47225 * 184.99700 * 7 5 4 34 34 H 1.08997 * 109.47714 * 304.99847 * 7 5 4 35 35 H 1.09002 * 109.46961 * 300.00001 * 8 7 5 36 36 H 1.08999 * 109.46758 * 60.00240 * 8 7 5 37 37 H 0.97001 * 119.99052 * 359.97438 * 10 9 8 38 38 H 0.96994 * 120.00558 * 180.02562 * 10 9 8 39 39 H 1.09000 * 110.36378 * 37.07938 * 15 14 12 40 40 H 1.08998 * 110.37024 * 274.75654 * 15 14 12 41 41 H 1.08999 * 111.00895 * 278.93886 * 16 15 14 42 42 H 1.09000 * 111.04072 * 155.09810 * 16 15 14 43 43 H 0.97005 * 120.00283 * 88.51967 * 19 17 16 44 44 H 0.97001 * 119.99866 * 180.02562 * 23 22 20 45 45 H 1.08998 * 109.88059 * 61.59780 * 28 14 12 46 46 H 1.08994 * 109.87878 * 300.43060 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1671 0.0011 6 1 4.0093 -2.1948 0.0010 7 6 4.1554 -0.4456 1.2503 8 6 3.7503 -1.2355 2.4964 9 6 4.2527 -0.5252 3.7268 10 7 4.0124 -1.0414 4.9484 11 8 4.8733 0.5111 3.6179 12 6 4.1486 -0.4570 -1.2294 13 8 3.4204 0.3043 -1.8302 14 7 5.4075 -0.6679 -1.6621 15 6 6.3950 -1.5616 -1.0300 16 6 7.3784 -1.9338 -2.1675 17 6 7.4581 -0.6015 -2.9587 18 1 8.1751 0.0799 -2.5007 19 7 7.8050 -0.8508 -4.3600 20 6 9.1172 -0.8465 -4.7517 21 1 9.8963 -0.6589 -4.0277 22 6 9.4458 -1.0822 -6.0796 23 7 8.4964 -1.3103 -6.9621 24 14 11.2358 -1.0756 -6.6141 25 1 11.7940 -2.4462 -6.4914 26 1 11.3288 -0.6280 -8.0270 27 1 12.0073 -0.1475 -5.7490 28 6 6.0240 -0.0436 -2.8419 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6960 -2.0073 0.0005 33 1 5.2418 -0.3674 1.2070 34 1 3.7208 0.5529 1.2959 35 1 2.6639 -1.3138 2.5397 36 1 4.1850 -2.2340 2.4508 37 1 3.5157 -1.8701 5.0355 38 1 4.3354 -0.5840 5.7404 39 1 5.9051 -2.4557 -0.6443 40 1 6.9204 -1.0407 -0.2295 41 1 6.9735 -2.7331 -2.7881 42 1 8.3540 -2.2092 -1.7669 43 1 7.1052 -1.0189 -5.0104 44 1 8.7261 -1.4753 -7.8899 45 1 6.0562 1.0384 -2.7144 46 1 5.4539 -0.2969 -3.7357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186371054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:46 Heat of formation + Delta-G solvation = -129.328578 kcal Electronic energy + Delta-G solvation = -28529.224261 eV Core-core repulsion = 24452.651170 eV Total energy + Delta-G solvation = -4076.573091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74680 -40.41616 -40.08579 -38.47097 -36.40712 -35.89498 -34.61525 -33.66565 -33.16581 -31.05279 -30.74335 -29.66939 -27.90782 -25.68126 -24.51512 -23.58567 -22.07290 -21.55712 -21.04812 -20.06454 -19.36352 -18.79840 -18.12081 -17.82945 -17.49542 -17.30666 -16.96609 -16.48919 -16.29588 -16.03009 -15.68877 -15.36320 -15.29532 -14.84071 -14.63464 -14.48721 -14.29988 -14.00910 -13.68965 -13.37537 -13.26421 -13.16598 -13.07135 -12.97478 -12.76097 -12.72748 -12.57519 -12.36073 -12.15322 -12.05257 -11.74961 -11.68309 -11.21218 -10.99199 -10.94815 -10.62440 -10.54085 -9.97851 -9.63729 -9.05655 -7.95743 -5.26221 1.48376 1.50499 1.57713 1.58739 1.69954 1.71537 2.07008 2.40887 2.56524 2.70231 3.34633 3.46454 3.75538 3.80415 3.81666 3.91188 4.01012 4.08774 4.16356 4.25939 4.30880 4.42487 4.49017 4.53548 4.59917 4.66540 4.72501 4.75411 4.85147 4.94429 5.00888 5.13572 5.20188 5.27256 5.30241 5.44370 5.51067 5.53144 5.95407 6.24687 6.54843 6.57553 6.70985 7.17990 7.31014 7.43888 7.53291 8.02376 8.26804 9.27870 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016690 B = 0.002762 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.292491 B =10135.112150 C =11341.414098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.500 3.500 3 O -0.573 6.573 4 N -0.708 5.708 5 C 0.150 3.850 6 H 0.160 0.840 7 C -0.113 4.113 8 C -0.124 4.124 9 C 0.507 3.493 10 N -0.838 5.838 11 O -0.604 6.604 12 C 0.501 3.499 13 O -0.569 6.569 14 N -0.614 5.614 15 C 0.103 3.897 16 C -0.141 4.141 17 C 0.165 3.835 18 H 0.065 0.935 19 N -0.730 5.730 20 C -0.240 4.240 21 H 0.083 0.917 22 C -0.076 4.076 23 N -0.972 5.972 24 Si 0.976 3.024 25 H -0.283 1.283 26 H -0.300 1.300 27 H -0.269 1.269 28 C 0.111 3.889 29 H 0.124 0.876 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.427 0.573 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.421 0.579 38 H 0.403 0.597 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.372 0.628 44 H 0.251 0.749 45 H 0.043 0.957 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.313 -11.016 27.016 33.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.288 3.712 3 O -0.451 6.451 4 N -0.363 5.363 5 C 0.041 3.959 6 H 0.178 0.822 7 C -0.152 4.152 8 C -0.163 4.163 9 C 0.293 3.707 10 N -0.401 5.401 11 O -0.485 6.485 12 C 0.289 3.711 13 O -0.447 6.447 14 N -0.349 5.349 15 C -0.019 4.019 16 C -0.182 4.182 17 C 0.055 3.945 18 H 0.083 0.917 19 N -0.370 5.370 20 C -0.372 4.372 21 H 0.100 0.900 22 C -0.268 4.268 23 N -0.622 5.622 24 Si 0.805 3.195 25 H -0.210 1.210 26 H -0.227 1.227 27 H -0.194 1.194 28 C -0.014 4.014 29 H 0.142 0.858 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.266 0.734 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.135 0.865 36 H 0.161 0.839 37 H 0.252 0.748 38 H 0.234 0.766 39 H 0.135 0.865 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.204 0.796 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.827 -9.195 26.485 32.195 hybrid contribution 0.513 0.129 -1.053 1.179 sum -15.314 -9.067 25.432 31.040 Atomic orbital electron populations 1.21894 0.88588 1.05352 1.06401 1.21545 0.92100 0.83334 0.74194 1.90750 1.71760 1.33648 1.48925 1.45591 1.04739 1.09649 1.76357 1.20883 0.82554 1.02219 0.90293 0.82249 1.21515 1.01605 0.99936 0.92153 1.21610 1.04499 1.01130 0.89107 1.21216 0.78142 0.84335 0.86961 1.43743 1.59404 1.29700 1.07293 1.90787 1.43317 1.26620 1.87765 1.21553 0.80048 0.82489 0.86976 1.90726 1.56592 1.38074 1.59310 1.48584 1.12451 1.45707 1.28147 1.22636 0.89463 0.94194 0.95607 1.23336 0.99930 0.98331 0.96613 1.21379 0.91855 0.95633 0.85636 0.91685 1.42534 1.04964 1.84948 1.04523 1.19647 0.85109 1.39267 0.93143 0.89953 1.25608 1.01578 1.03322 0.96305 1.69835 1.32945 1.56985 1.02434 0.85107 0.79805 0.77861 0.76766 1.20986 1.22658 1.19367 1.21945 0.94737 0.96483 0.88259 0.85800 0.90682 0.88013 0.73388 0.90903 0.93018 0.86452 0.83921 0.74755 0.76602 0.86525 0.89785 0.91786 0.89078 0.79630 0.94030 0.93820 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 10.32 71.24 0.74 -1.33 16 2 C 0.50 11.49 6.70 87.66 0.59 12.07 16 3 O -0.57 -21.13 12.94 19.43 0.25 -20.88 16 4 N -0.71 -10.52 4.65 -446.08 -2.08 -12.59 16 5 C 0.15 2.73 2.43 44.24 0.11 2.84 16 6 H 0.16 1.25 6.91 -2.38 -0.02 1.23 16 7 C -0.11 -2.29 3.82 30.59 0.12 -2.17 16 8 C -0.12 -1.15 5.59 29.85 0.17 -0.98 16 9 C 0.51 8.12 8.10 87.66 0.71 8.83 16 10 N -0.84 -5.34 8.87 -173.53 -1.54 -6.88 16 11 O -0.60 -17.79 16.82 -3.04 -0.05 -17.85 16 12 C 0.50 16.07 6.84 87.66 0.60 16.67 16 13 O -0.57 -24.57 14.01 19.43 0.27 -24.30 16 14 N -0.61 -19.18 3.33 -811.79 -2.70 -21.88 16 15 C 0.10 2.27 6.23 86.86 0.54 2.81 16 16 C -0.14 -4.22 6.77 31.99 0.22 -4.01 16 17 C 0.16 6.50 3.61 46.18 0.17 6.67 16 18 H 0.07 2.58 8.09 -2.39 -0.02 2.56 16 19 N -0.73 -36.97 5.22 -317.32 -1.66 -38.63 16 20 C -0.24 -13.15 9.96 84.03 0.84 -12.31 16 21 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 22 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 23 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 24 Si 0.98 45.92 29.55 68.60 2.03 47.94 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 C 0.11 4.35 6.62 86.73 0.57 4.93 16 29 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 31 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.43 2.01 8.83 -92.71 -0.82 1.19 16 33 H 0.07 1.63 7.36 -2.39 -0.02 1.61 16 34 H 0.05 1.63 6.00 -2.39 -0.01 1.62 16 35 H 0.12 0.58 7.75 -2.39 -0.02 0.57 16 36 H 0.14 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.42 -0.80 8.83 -92.71 -0.82 -1.62 16 38 H 0.40 2.60 8.93 -92.71 -0.83 1.77 16 39 H 0.12 1.49 6.92 -2.39 -0.02 1.48 16 40 H 0.08 1.66 7.86 -2.39 -0.02 1.64 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.37 20.66 7.56 -92.70 -0.70 19.96 16 44 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.04 1.88 7.72 -2.39 -0.02 1.86 16 Total: -1.00 -98.86 378.13 -1.48 -100.34 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -2.11 Total: 24.30 kcal Atomic # 6 Polarization: 24.30 SS G_CDS: 5.82 Total: 30.12 kcal Atomic # 7 Polarization: -131.98 SS G_CDS: -7.69 Total: -139.67 kcal Atomic # 8 Polarization: -63.50 SS G_CDS: 0.47 Total: -63.03 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -98.86 -1.48 -100.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186371054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.992 kcal (2) G-P(sol) polarization free energy of solvation -98.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds