Wall clock time and date at job start Tue Mar 31 2020 05:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21274 * 119.99890 * 2 1 4 4 N 1.34777 * 119.99579 * 180.26977 * 2 1 3 5 5 C 1.46497 * 119.99363 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.47767 * 34.99764 * 5 4 2 7 7 C 1.53002 * 109.47227 * 155.00252 * 5 4 2 8 8 C 1.50708 * 109.46772 * 294.99591 * 7 5 4 9 9 O 1.21280 * 119.99800 * 359.97438 * 8 7 5 10 10 N 1.34773 * 119.99912 * 179.97438 * 8 7 5 11 11 C 1.47025 * 125.64787 * 359.69351 * 10 8 7 12 12 C 1.54343 * 107.26476 * 178.84781 * 11 10 8 13 13 C 1.55160 * 103.01787 * 338.14311 * 12 11 10 14 14 H 1.09001 * 110.99894 * 277.23145 * 13 12 11 15 15 N 1.46497 * 111.03180 * 153.39732 * 13 12 11 16 16 C 1.46497 * 120.00059 * 307.77797 * 15 13 12 17 17 C 1.36940 * 119.99891 * 127.78767 * 15 13 12 18 18 H 1.08001 * 120.00079 * 23.24976 * 17 15 13 19 19 C 1.38814 * 119.99739 * 203.26135 * 17 15 13 20 20 N 1.31622 * 120.00129 * 13.80602 * 19 17 15 21 21 Si 1.86806 * 119.99730 * 193.81409 * 19 17 15 22 22 H 1.48495 * 109.47218 * 59.99282 * 21 19 17 23 23 H 1.48496 * 109.46930 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46979 * 299.99303 * 21 19 17 25 25 C 1.47425 * 125.64964 * 180.02562 * 10 8 7 26 26 C 1.50703 * 109.46986 * 274.99572 * 5 4 2 27 27 N 1.34783 * 120.00114 * 180.02562 * 26 5 4 28 28 O 1.21281 * 119.99883 * 0.02562 * 26 5 4 29 29 H 1.08999 * 109.46855 * 239.73343 * 1 2 3 30 30 H 1.09001 * 109.46953 * 359.72714 * 1 2 3 31 31 H 1.08994 * 109.47148 * 119.72576 * 1 2 3 32 32 H 0.96992 * 120.00568 * 0.02562 * 4 2 1 33 33 H 1.08995 * 109.47102 * 54.99254 * 7 5 4 34 34 H 1.08995 * 109.47448 * 174.99927 * 7 5 4 35 35 H 1.08996 * 109.88157 * 298.39249 * 11 10 8 36 36 H 1.08998 * 109.88193 * 59.56053 * 11 10 8 37 37 H 1.08994 * 110.84924 * 219.67205 * 12 11 10 38 38 H 1.09002 * 110.51298 * 96.44965 * 12 11 10 39 39 H 1.08996 * 109.47087 * 95.16856 * 16 15 13 40 40 H 1.09002 * 109.47282 * 215.16511 * 16 15 13 41 41 H 1.09002 * 109.47286 * 335.16133 * 16 15 13 42 42 H 0.97001 * 119.99847 * 180.02562 * 20 19 17 43 43 H 1.09005 * 110.36276 * 322.92751 * 25 10 8 44 44 H 1.08992 * 110.36720 * 85.25187 * 25 10 8 45 45 H 0.97003 * 119.99651 * 359.97438 * 27 26 5 46 46 H 0.96999 * 119.99697 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0055 5 6 3.6459 -1.1672 -0.0049 6 1 4.0090 -0.3283 0.5887 7 6 4.1557 -2.4775 0.5984 8 6 3.7565 -2.5511 2.0498 9 8 3.1267 -1.6445 2.5521 10 7 4.0994 -3.6243 2.7894 11 6 4.8528 -4.7914 2.3080 12 6 5.0327 -5.7468 3.5067 13 6 4.8542 -4.8097 4.7304 14 1 5.7824 -4.2867 4.9605 15 7 4.3708 -5.5536 5.8962 16 6 3.1798 -6.3990 5.7834 17 6 5.0323 -5.4584 7.0915 18 1 5.6477 -4.5960 7.3010 19 6 4.9121 -6.4707 8.0337 20 7 4.3970 -7.6321 7.6898 21 14 5.4810 -6.1844 9.7898 22 1 4.7197 -5.0537 10.3788 23 1 5.2450 -7.4111 10.5928 24 1 6.9303 -5.8609 9.7940 25 6 3.7752 -3.8255 4.2134 26 6 4.1487 -1.0365 -1.4196 27 7 5.4739 -1.0143 -1.6644 28 8 3.3609 -0.9512 -2.3377 29 1 -0.3633 -0.5180 0.8876 30 1 -0.3633 1.0277 0.0049 31 1 -0.3633 -0.5095 -0.8924 32 1 1.6959 -2.0072 -0.0098 33 1 3.7212 -3.3192 0.0590 34 1 5.2420 -2.5162 0.5180 35 1 4.2965 -5.2901 1.5143 36 1 5.8284 -4.4760 1.9381 37 1 6.0281 -6.1908 3.5029 38 1 4.2643 -6.5199 3.4977 39 1 3.4815 -7.4268 5.5818 40 1 2.6181 -6.3618 6.7168 41 1 2.5534 -6.0374 4.9679 42 1 4.3127 -8.3394 8.3484 43 1 3.8342 -2.8803 4.7531 44 1 2.7819 -4.2619 4.3183 45 1 6.1040 -1.0821 -0.9300 46 1 5.7975 -0.9298 -2.5749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192695817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:10 Heat of formation + Delta-G solvation = -80.437741 kcal Electronic energy + Delta-G solvation = -28461.466745 eV Core-core repulsion = 24387.013720 eV Total energy + Delta-G solvation = -4074.453025 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.79800 -39.65790 -38.84868 -37.61491 -35.08635 -34.88323 -34.04730 -32.03690 -31.41168 -29.94643 -29.34247 -27.97026 -26.14535 -25.56213 -23.35329 -22.39346 -21.29711 -20.51242 -19.43532 -19.23926 -18.16687 -17.46501 -17.13352 -17.01182 -16.53888 -16.21743 -15.77106 -15.43774 -15.06474 -14.87775 -14.53663 -14.20943 -13.94560 -13.60605 -13.50638 -13.34142 -13.07128 -12.73201 -12.59866 -12.53261 -12.28516 -12.22335 -12.03637 -11.90117 -11.43867 -11.01089 -10.84621 -10.61407 -10.57643 -10.54256 -10.35244 -10.04480 -9.99321 -9.97145 -9.96270 -9.80348 -9.20566 -8.66916 -8.48274 -6.88697 -5.83859 -3.31793 2.25415 2.55570 2.59026 2.88462 2.99802 3.33276 3.39261 3.40194 3.42519 4.19084 4.31726 4.40619 4.66544 4.69585 4.81785 4.89823 4.97846 5.15616 5.17904 5.24461 5.29531 5.36824 5.40791 5.50289 5.65489 5.72311 5.80546 5.90721 6.14356 6.18600 6.27146 6.40175 6.43605 6.53191 6.66872 6.77245 6.94487 7.24838 7.34941 7.59710 7.62624 7.70898 7.90783 8.15990 8.16384 8.28050 9.11037 9.73290 10.21417 11.20579 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021758 B = 0.002548 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.595597 B =10985.894623 C =11518.085622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.527 3.473 3 O -0.548 6.548 4 N -0.700 5.700 5 C 0.146 3.854 6 H 0.124 0.876 7 C -0.144 4.144 8 C 0.522 3.478 9 O -0.532 6.532 10 N -0.611 5.611 11 C 0.100 3.900 12 C -0.151 4.151 13 C 0.174 3.826 14 H 0.078 0.922 15 N -0.584 5.584 16 C 0.159 3.841 17 C -0.264 4.264 18 H 0.069 0.931 19 C 0.007 3.993 20 N -0.904 5.904 21 Si 0.907 3.093 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.085 3.915 26 C 0.509 3.491 27 N -0.854 5.854 28 O -0.531 6.531 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.403 0.597 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.041 0.959 41 H 0.001 0.999 42 H 0.254 0.746 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.402 0.598 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.033 6.586 -17.917 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.314 3.686 3 O -0.425 6.425 4 N -0.351 5.351 5 C 0.036 3.964 6 H 0.142 0.858 7 C -0.184 4.184 8 C 0.309 3.691 9 O -0.409 6.409 10 N -0.345 5.345 11 C -0.023 4.023 12 C -0.192 4.192 13 C 0.063 3.937 14 H 0.096 0.904 15 N -0.304 5.304 16 C 0.015 3.985 17 C -0.393 4.393 18 H 0.087 0.913 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.736 3.264 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.208 1.208 25 C -0.039 4.039 26 C 0.292 3.708 27 N -0.418 5.418 28 O -0.406 6.406 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.238 0.762 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.020 0.980 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.231 0.769 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -0.691 7.758 -17.990 19.604 hybrid contribution 0.659 -0.615 0.876 1.257 sum -0.032 7.142 -17.114 18.545 Atomic orbital electron populations 1.21874 0.91457 1.05476 1.04296 1.20666 0.90623 0.83094 0.74171 1.90688 1.70835 1.31430 1.49572 1.45404 1.04718 1.09369 1.75590 1.20485 0.83177 1.00115 0.92671 0.85825 1.21931 1.03874 0.98041 0.94596 1.19854 0.80285 0.81461 0.87461 1.90769 1.40074 1.37154 1.72905 1.48495 1.54860 1.18601 1.12547 1.22110 0.95320 0.86750 0.98140 1.23225 1.02967 0.98391 0.94583 1.21411 0.94494 0.91026 0.86806 0.90356 1.43796 1.28478 1.52313 1.05842 1.20810 0.86727 0.93918 0.97076 1.19167 1.26413 1.02010 0.91743 0.91284 1.25026 1.00205 0.94732 0.99246 1.70053 1.48836 1.02683 1.33224 0.86311 0.78598 0.77040 0.84441 1.20938 1.21585 1.20837 1.23056 1.00870 1.01129 0.78867 1.21106 0.82685 0.75246 0.91783 1.43857 1.07273 1.77733 1.12978 1.90738 1.55382 1.48447 1.46009 0.89182 0.89028 0.89396 0.76215 0.87752 0.87120 0.91987 0.91770 0.90391 0.90485 0.94748 0.93984 0.98027 0.93547 0.90899 0.91391 0.76928 0.76642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.32 36.01 0.37 -1.18 16 2 C 0.53 7.01 7.77 -10.98 -0.09 6.92 16 3 O -0.55 -9.52 16.75 5.56 0.09 -9.43 16 4 N -0.70 -7.86 3.75 -54.93 -0.21 -8.07 16 5 C 0.15 1.51 1.94 -69.08 -0.13 1.38 16 6 H 0.12 1.52 7.39 -51.93 -0.38 1.14 16 7 C -0.14 -1.15 4.38 -27.88 -0.12 -1.28 16 8 C 0.52 6.59 7.71 -10.98 -0.08 6.50 16 9 O -0.53 -8.82 15.61 5.56 0.09 -8.74 16 10 N -0.61 -8.03 3.33 -170.50 -0.57 -8.60 16 11 C 0.10 1.08 6.49 -3.05 -0.02 1.06 16 12 C -0.15 -2.21 6.50 -24.88 -0.16 -2.37 16 13 C 0.17 3.15 3.54 -65.77 -0.23 2.91 16 14 H 0.08 1.45 7.96 -51.93 -0.41 1.03 16 15 N -0.58 -13.45 2.96 -171.02 -0.51 -13.95 16 16 C 0.16 3.61 7.57 59.85 0.45 4.06 16 17 C -0.26 -6.84 9.60 -15.06 -0.14 -6.99 16 18 H 0.07 1.75 7.87 -52.49 -0.41 1.34 16 19 C 0.01 0.19 5.08 -17.43 -0.09 0.10 16 20 N -0.90 -25.04 10.77 55.49 0.60 -24.44 16 21 Si 0.91 21.01 29.58 -169.99 -5.03 15.98 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.09 1.42 6.47 -2.52 -0.02 1.40 16 26 C 0.51 5.31 7.46 -10.98 -0.08 5.23 16 27 N -0.85 -5.18 8.74 31.22 0.27 -4.90 16 28 O -0.53 -7.67 17.16 5.56 0.10 -7.57 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.82 8.12 -51.93 -0.42 0.40 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.40 3.62 8.60 -40.82 -0.35 3.27 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.11 0.56 7.43 -51.93 -0.39 0.18 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.22 7.00 -51.93 -0.36 0.86 16 39 H 0.03 0.84 7.33 -51.93 -0.38 0.46 16 40 H 0.04 1.05 7.38 -51.93 -0.38 0.66 16 41 H 0.00 0.03 6.38 -51.93 -0.33 -0.31 16 42 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.07 1.32 8.04 -51.93 -0.42 0.91 16 44 H 0.07 1.21 6.42 -51.93 -0.33 0.88 16 45 H 0.40 1.33 8.19 -40.82 -0.33 1.00 16 46 H 0.40 2.04 8.93 -40.82 -0.36 1.67 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -36.42 378.96 -6.74 -43.17 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.95 Total: 3.09 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: -0.35 Total: 17.75 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.41 Total: -59.96 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: 0.28 Total: -25.74 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.42 -6.74 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192695817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.271 kcal (2) G-P(sol) polarization free energy of solvation -36.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds