Wall clock time and date at job start Tue Mar 31 2020 05:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21274 * 119.99890 * 2 1 4 4 N 1.34777 * 119.99579 * 180.26977 * 2 1 3 5 5 C 1.46497 * 119.99363 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.47767 * 34.99764 * 5 4 2 7 7 C 1.53002 * 109.47227 * 155.00252 * 5 4 2 8 8 C 1.50708 * 109.46772 * 294.99591 * 7 5 4 9 9 O 1.21280 * 119.99800 * 359.97438 * 8 7 5 10 10 N 1.34773 * 119.99912 * 179.97438 * 8 7 5 11 11 C 1.47025 * 125.64787 * 359.69351 * 10 8 7 12 12 C 1.54343 * 107.26476 * 178.84781 * 11 10 8 13 13 C 1.55160 * 103.01787 * 338.14311 * 12 11 10 14 14 H 1.09001 * 110.99894 * 277.23145 * 13 12 11 15 15 N 1.46497 * 111.03180 * 153.39732 * 13 12 11 16 16 C 1.46497 * 120.00059 * 307.77797 * 15 13 12 17 17 C 1.36940 * 119.99891 * 127.78767 * 15 13 12 18 18 H 1.08001 * 120.00079 * 23.24976 * 17 15 13 19 19 C 1.38814 * 119.99739 * 203.26135 * 17 15 13 20 20 N 1.31622 * 120.00129 * 13.80602 * 19 17 15 21 21 Si 1.86806 * 119.99730 * 193.81409 * 19 17 15 22 22 H 1.48495 * 109.47218 * 59.99282 * 21 19 17 23 23 H 1.48496 * 109.46930 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46979 * 299.99303 * 21 19 17 25 25 C 1.47425 * 125.64964 * 180.02562 * 10 8 7 26 26 C 1.50703 * 109.46986 * 274.99572 * 5 4 2 27 27 N 1.34783 * 120.00114 * 180.02562 * 26 5 4 28 28 O 1.21281 * 119.99883 * 0.02562 * 26 5 4 29 29 H 1.08999 * 109.46855 * 239.73343 * 1 2 3 30 30 H 1.09001 * 109.46953 * 359.72714 * 1 2 3 31 31 H 1.08994 * 109.47148 * 119.72576 * 1 2 3 32 32 H 0.96992 * 120.00568 * 0.02562 * 4 2 1 33 33 H 1.08995 * 109.47102 * 54.99254 * 7 5 4 34 34 H 1.08995 * 109.47448 * 174.99927 * 7 5 4 35 35 H 1.08996 * 109.88157 * 298.39249 * 11 10 8 36 36 H 1.08998 * 109.88193 * 59.56053 * 11 10 8 37 37 H 1.08994 * 110.84924 * 219.67205 * 12 11 10 38 38 H 1.09002 * 110.51298 * 96.44965 * 12 11 10 39 39 H 1.08996 * 109.47087 * 95.16856 * 16 15 13 40 40 H 1.09002 * 109.47282 * 215.16511 * 16 15 13 41 41 H 1.09002 * 109.47286 * 335.16133 * 16 15 13 42 42 H 0.97001 * 119.99847 * 180.02562 * 20 19 17 43 43 H 1.09005 * 110.36276 * 322.92751 * 25 10 8 44 44 H 1.08992 * 110.36720 * 85.25187 * 25 10 8 45 45 H 0.97003 * 119.99651 * 359.97438 * 27 26 5 46 46 H 0.96999 * 119.99697 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0055 5 6 3.6459 -1.1672 -0.0049 6 1 4.0090 -0.3283 0.5887 7 6 4.1557 -2.4775 0.5984 8 6 3.7565 -2.5511 2.0498 9 8 3.1267 -1.6445 2.5521 10 7 4.0994 -3.6243 2.7894 11 6 4.8528 -4.7914 2.3080 12 6 5.0327 -5.7468 3.5067 13 6 4.8542 -4.8097 4.7304 14 1 5.7824 -4.2867 4.9605 15 7 4.3708 -5.5536 5.8962 16 6 3.1798 -6.3990 5.7834 17 6 5.0323 -5.4584 7.0915 18 1 5.6477 -4.5960 7.3010 19 6 4.9121 -6.4707 8.0337 20 7 4.3970 -7.6321 7.6898 21 14 5.4810 -6.1844 9.7898 22 1 4.7197 -5.0537 10.3788 23 1 5.2450 -7.4111 10.5928 24 1 6.9303 -5.8609 9.7940 25 6 3.7752 -3.8255 4.2134 26 6 4.1487 -1.0365 -1.4196 27 7 5.4739 -1.0143 -1.6644 28 8 3.3609 -0.9512 -2.3377 29 1 -0.3633 -0.5180 0.8876 30 1 -0.3633 1.0277 0.0049 31 1 -0.3633 -0.5095 -0.8924 32 1 1.6959 -2.0072 -0.0098 33 1 3.7212 -3.3192 0.0590 34 1 5.2420 -2.5162 0.5180 35 1 4.2965 -5.2901 1.5143 36 1 5.8284 -4.4760 1.9381 37 1 6.0281 -6.1908 3.5029 38 1 4.2643 -6.5199 3.4977 39 1 3.4815 -7.4268 5.5818 40 1 2.6181 -6.3618 6.7168 41 1 2.5534 -6.0374 4.9679 42 1 4.3127 -8.3394 8.3484 43 1 3.8342 -2.8803 4.7531 44 1 2.7819 -4.2619 4.3183 45 1 6.1040 -1.0821 -0.9300 46 1 5.7975 -0.9298 -2.5749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192695817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:10 Heat of formation + Delta-G solvation = -110.790251 kcal Electronic energy + Delta-G solvation = -28462.782929 eV Core-core repulsion = 24387.013720 eV Total energy + Delta-G solvation = -4075.769209 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71219 -40.72862 -39.78520 -38.89491 -36.54799 -35.99461 -34.78135 -33.53119 -32.49279 -31.27618 -30.22152 -29.19284 -28.04280 -26.56790 -24.79860 -23.66835 -22.16258 -21.36363 -20.92804 -20.21840 -18.96171 -18.93168 -18.28182 -17.93676 -17.49801 -17.48454 -16.83645 -16.42896 -16.34978 -15.98437 -15.72522 -15.36538 -15.11963 -14.84575 -14.62666 -14.51002 -14.37231 -14.22619 -13.80812 -13.50801 -13.38663 -13.06661 -13.04917 -12.92112 -12.79164 -12.70214 -12.44953 -12.39039 -12.13381 -12.09149 -11.82873 -11.48072 -11.39843 -11.01969 -10.93609 -10.67727 -10.63297 -10.12282 -9.60876 -8.77176 -7.83782 -5.32609 1.45074 1.47575 1.50345 1.55951 1.61057 1.64240 1.96814 2.11193 2.51391 2.68031 3.28095 3.39976 3.52670 3.59829 3.92682 3.96318 3.99218 4.03621 4.20098 4.26451 4.39099 4.41702 4.49083 4.50239 4.61336 4.65062 4.76218 4.82820 4.94483 5.02852 5.06522 5.22825 5.26541 5.33188 5.34799 5.46979 5.64976 5.72501 5.87437 6.32214 6.37424 6.48217 6.61182 7.13650 7.16822 7.22535 7.28570 7.85569 8.28540 9.18459 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021758 B = 0.002548 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.595597 B =10985.894623 C =11518.085622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.512 3.488 3 O -0.600 6.600 4 N -0.695 5.695 5 C 0.143 3.857 6 H 0.102 0.898 7 C -0.127 4.127 8 C 0.522 3.478 9 O -0.578 6.578 10 N -0.610 5.610 11 C 0.107 3.893 12 C -0.143 4.143 13 C 0.164 3.836 14 H 0.073 0.927 15 N -0.602 5.602 16 C 0.178 3.822 17 C -0.269 4.269 18 H 0.069 0.931 19 C -0.045 4.045 20 N -0.932 5.932 21 Si 0.964 3.036 22 H -0.283 1.283 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.099 3.901 26 C 0.511 3.489 27 N -0.829 5.829 28 O -0.576 6.576 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.414 0.586 33 H 0.135 0.865 34 H 0.152 0.848 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.013 0.987 40 H 0.009 0.991 41 H 0.030 0.970 42 H 0.249 0.751 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.418 0.582 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.191 6.204 -20.041 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.301 3.699 3 O -0.482 6.482 4 N -0.346 5.346 5 C 0.032 3.968 6 H 0.119 0.881 7 C -0.167 4.167 8 C 0.312 3.688 9 O -0.457 6.457 10 N -0.343 5.343 11 C -0.015 4.015 12 C -0.183 4.183 13 C 0.055 3.945 14 H 0.091 0.909 15 N -0.323 5.323 16 C 0.033 3.967 17 C -0.400 4.400 18 H 0.087 0.913 19 C -0.241 4.241 20 N -0.578 5.578 21 Si 0.793 3.207 22 H -0.210 1.210 23 H -0.221 1.221 24 H -0.199 1.199 25 C -0.027 4.027 26 C 0.294 3.706 27 N -0.395 5.395 28 O -0.455 6.455 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.251 0.749 33 H 0.153 0.847 34 H 0.169 0.831 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.031 0.969 40 H 0.028 0.972 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.250 0.750 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.603 7.349 -20.152 21.459 hybrid contribution 0.318 -0.436 1.515 1.609 sum 0.922 6.913 -18.637 19.899 Atomic orbital electron populations 1.21894 0.88585 1.05954 1.06030 1.21449 0.92322 0.82875 0.73247 1.90651 1.72115 1.33188 1.52206 1.45448 1.05428 1.09392 1.74313 1.20528 0.82832 1.00686 0.92710 0.88063 1.21958 1.06420 0.97629 0.90726 1.20600 0.79093 0.80203 0.88917 1.90769 1.42074 1.38732 1.74165 1.48503 1.55233 1.19732 1.10874 1.22269 0.97514 0.84949 0.96796 1.23057 1.02901 0.98086 0.94259 1.21566 0.94478 0.91661 0.86792 0.90910 1.43952 1.28716 1.52788 1.06867 1.20490 0.86801 0.93059 0.96312 1.19475 1.25647 1.01646 0.93188 0.91311 1.25699 1.01192 0.94746 1.02483 1.70194 1.50544 1.03267 1.33807 0.85393 0.78453 0.76426 0.80469 1.20986 1.22057 1.19935 1.22575 0.99505 0.99262 0.81345 1.21026 0.83609 0.74956 0.91006 1.43659 1.06045 1.75554 1.14219 1.90726 1.56795 1.50923 1.47005 0.87765 0.89290 0.87066 0.74892 0.84695 0.83054 0.88615 0.87991 0.89846 0.91799 0.96906 0.97242 0.95124 0.94188 0.93221 0.92793 0.74983 0.75631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 10.32 71.24 0.74 -2.11 16 2 C 0.51 13.54 7.77 87.66 0.68 14.22 16 3 O -0.60 -21.44 16.75 -3.01 -0.05 -21.49 16 4 N -0.69 -14.72 3.75 -446.09 -1.67 -16.40 16 5 C 0.14 2.67 1.94 44.25 0.09 2.76 16 6 H 0.10 2.42 7.39 -2.39 -0.02 2.40 16 7 C -0.13 -1.49 4.38 29.85 0.13 -1.36 16 8 C 0.52 11.72 7.71 87.66 0.68 12.39 16 9 O -0.58 -18.68 15.61 -3.03 -0.05 -18.72 16 10 N -0.61 -14.18 3.33 -811.73 -2.70 -16.88 16 11 C 0.11 1.77 6.49 86.74 0.56 2.33 16 12 C -0.14 -3.80 6.50 31.79 0.21 -3.59 16 13 C 0.16 5.80 3.54 46.39 0.16 5.96 16 14 H 0.07 2.63 7.96 -2.39 -0.02 2.62 16 15 N -0.60 -27.95 2.96 -695.00 -2.05 -30.00 16 16 C 0.18 8.23 7.57 127.77 0.97 9.19 16 17 C -0.27 -14.13 9.60 84.03 0.81 -13.32 16 18 H 0.07 3.52 7.87 -2.91 -0.02 3.50 16 19 C -0.05 -2.44 5.08 84.86 0.43 -2.01 16 20 N -0.93 -52.81 10.77 21.65 0.23 -52.58 16 21 Si 0.96 43.73 29.58 68.60 2.03 45.76 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 25 C 0.10 3.21 6.47 86.86 0.56 3.77 16 26 C 0.51 9.48 7.46 87.66 0.65 10.13 16 27 N -0.83 -7.31 8.74 -173.52 -1.52 -8.82 16 28 O -0.58 -15.82 17.16 -3.03 -0.05 -15.87 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 1.57 8.12 -2.39 -0.02 1.55 16 31 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.41 6.58 8.60 -92.71 -0.80 5.78 16 33 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.15 0.59 7.43 -2.39 -0.02 0.57 16 35 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 1.89 7.00 -2.39 -0.02 1.87 16 39 H 0.01 0.64 7.33 -2.39 -0.02 0.62 16 40 H 0.01 0.46 7.38 -2.39 -0.02 0.44 16 41 H 0.03 1.20 6.38 -2.39 -0.02 1.18 16 42 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 43 H 0.05 1.83 8.04 -2.38 -0.02 1.81 16 44 H 0.05 1.90 6.42 -2.39 -0.02 1.88 16 45 H 0.42 1.03 8.19 -92.71 -0.76 0.27 16 46 H 0.41 2.85 8.93 -92.71 -0.83 2.02 16 Total: -1.00 -84.66 378.96 -0.52 -85.18 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -1.35 Total: 11.48 kcal Atomic # 6 Polarization: 31.71 SS G_CDS: 6.66 Total: 38.37 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -7.71 Total: -124.69 kcal Atomic # 8 Polarization: -55.94 SS G_CDS: -0.15 Total: -56.09 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -84.66 -0.52 -85.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192695817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.615 kcal (2) G-P(sol) polarization free energy of solvation -84.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds