Wall clock time and date at job start Tue Mar 31 2020 05:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 120.00236 * 2 1 4 4 N 1.34778 * 120.00133 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00108 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.47302 * 35.00660 * 5 4 2 7 7 C 1.53001 * 109.46971 * 155.00095 * 5 4 2 8 8 C 1.50703 * 109.47351 * 295.00007 * 7 5 4 9 9 O 1.21281 * 119.99835 * 0.02562 * 8 7 5 10 10 N 1.34773 * 119.99967 * 180.02562 * 8 7 5 11 11 C 1.48220 * 119.96991 * 180.02562 * 10 8 7 12 12 C 1.47132 * 110.34551 * 102.46166 * 11 10 8 13 13 C 1.53806 * 111.83776 * 58.29591 * 12 11 10 14 14 N 1.43463 * 107.96459 * 281.67022 * 13 12 11 15 15 C 1.36939 * 118.94271 * 273.63066 * 14 13 12 16 16 H 1.08001 * 119.99764 * 24.96659 * 15 14 13 17 17 C 1.38810 * 119.99982 * 204.97011 * 15 14 13 18 18 N 1.31622 * 119.99694 * 14.63203 * 17 15 14 19 19 Si 1.86798 * 120.00060 * 194.63929 * 17 15 14 20 20 H 1.48500 * 109.47127 * 89.99306 * 19 17 15 21 21 H 1.48498 * 109.46938 * 209.99800 * 19 17 15 22 22 H 1.48505 * 109.46913 * 329.99709 * 19 17 15 23 23 C 1.48856 * 122.11702 * 93.65134 * 14 13 12 24 24 C 1.43612 * 119.97543 * 359.72385 * 10 8 7 25 25 C 1.50701 * 109.47332 * 275.00053 * 5 4 2 26 26 N 1.34780 * 119.99852 * 179.97438 * 25 5 4 27 27 O 1.21272 * 119.99651 * 0.02562 * 25 5 4 28 28 H 1.08997 * 109.47030 * 269.99964 * 1 2 3 29 29 H 1.08996 * 109.47063 * 29.99843 * 1 2 3 30 30 H 1.09008 * 109.46964 * 150.00075 * 1 2 3 31 31 H 0.97000 * 119.99619 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.47004 * 175.00276 * 7 5 4 33 33 H 1.09001 * 109.47313 * 55.00430 * 7 5 4 34 34 H 1.08997 * 109.32609 * 222.73257 * 11 10 8 35 35 H 1.09006 * 109.31998 * 342.37145 * 11 10 8 36 36 H 1.08997 * 109.00870 * 178.90257 * 12 11 10 37 37 H 1.09002 * 109.01127 * 297.76780 * 12 11 10 38 38 H 1.08994 * 109.75979 * 41.29141 * 13 12 11 39 39 H 1.08998 * 109.76047 * 162.00288 * 13 12 11 40 40 H 0.97002 * 119.99764 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.48295 * 80.57763 * 23 14 13 42 42 H 1.08993 * 109.48358 * 200.60670 * 23 14 13 43 43 H 1.09003 * 108.87559 * 31.47304 * 24 10 8 44 44 H 1.09002 * 108.87696 * 149.90565 * 24 10 8 45 45 H 0.96997 * 119.99989 * 0.02562 * 26 25 5 46 46 H 0.96996 * 119.99660 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0095 -0.3250 0.5888 7 6 4.1561 -2.4742 0.6102 8 6 3.7580 -2.5397 2.0623 9 8 3.1278 -1.6307 2.5598 10 7 4.1023 -3.6083 2.8078 11 6 3.7099 -3.6723 4.2357 12 6 2.5571 -4.5699 4.4097 13 6 2.8574 -5.9913 3.9047 14 7 2.7526 -5.9839 2.4739 15 6 1.5260 -6.1816 1.8982 16 1 0.6271 -5.9430 2.4472 17 6 1.4379 -6.6886 0.6090 18 7 2.4902 -7.2455 0.0477 19 14 -0.1737 -6.5804 -0.3292 20 1 -0.2173 -5.3077 -1.0931 21 1 -0.2773 -7.7256 -1.2688 22 1 -1.3078 -6.6218 0.6287 23 6 3.9346 -5.7687 1.5950 24 6 4.8434 -4.6870 2.2165 25 6 4.1477 -1.0443 -1.4157 26 7 5.4728 -1.0225 -1.6615 27 8 3.3593 -0.9641 -2.3337 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8901 -0.5139 31 1 1.6959 -2.0072 0.0005 32 1 5.2424 -2.5132 0.5293 33 1 3.7213 -3.3188 0.0758 34 1 4.5487 -4.0444 4.8240 35 1 3.4418 -2.6738 4.5812 36 1 2.2996 -4.6161 5.4678 37 1 1.7084 -4.1693 3.8553 38 1 3.8659 -6.2815 4.1990 39 1 2.1352 -6.6917 4.3242 40 1 2.4285 -7.6002 -0.8531 41 1 4.4905 -6.7013 1.4986 42 1 3.6007 -5.4411 0.6106 43 1 5.4890 -4.2849 1.4358 44 1 5.4659 -5.1489 2.9829 45 1 6.1033 -1.0862 -0.9272 46 1 5.7957 -0.9437 -2.5727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197346147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:13 Heat of formation + Delta-G solvation = -79.058590 kcal Electronic energy + Delta-G solvation = -30347.977258 eV Core-core repulsion = 26273.584037 eV Total energy + Delta-G solvation = -4074.393221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.54627 -39.49271 -38.53817 -37.13558 -34.80468 -34.30405 -33.74247 -32.94901 -31.25746 -30.87531 -28.98709 -27.68213 -25.94111 -24.82676 -23.76517 -21.94490 -20.91454 -20.14249 -19.84550 -18.68111 -17.88952 -17.19125 -16.82348 -16.73201 -16.06569 -15.95802 -15.74968 -15.06646 -14.76706 -14.66731 -14.44739 -13.91973 -13.84742 -13.58795 -13.36721 -13.27319 -12.98011 -12.70262 -12.43384 -12.31420 -12.04431 -11.99129 -11.89718 -11.47891 -11.43516 -11.07066 -10.85276 -10.62592 -10.32575 -10.26647 -10.22412 -9.94540 -9.78835 -9.73978 -9.67936 -9.45735 -8.85526 -8.57396 -8.15900 -6.80240 -5.89140 -3.30979 2.58647 2.84606 2.94384 3.23614 3.30678 3.38795 3.40056 3.40192 3.72541 4.41783 4.59790 4.66639 5.00051 5.06308 5.14074 5.19974 5.27379 5.36811 5.44947 5.47369 5.57461 5.60517 5.70696 5.78637 5.85640 5.97654 5.99258 6.04867 6.20307 6.36787 6.44691 6.50089 6.72958 6.74586 6.80703 6.96042 7.23955 7.24601 7.36926 7.70452 7.71584 7.85008 8.22222 8.33893 8.47090 8.52572 9.11133 9.78401 10.23497 11.18673 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010181 B = 0.005508 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.426324 B = 5082.698874 C = 5858.242610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.528 3.472 3 O -0.557 6.557 4 N -0.695 5.695 5 C 0.149 3.851 6 H 0.120 0.880 7 C -0.149 4.149 8 C 0.521 3.479 9 O -0.544 6.544 10 N -0.582 5.582 11 C 0.131 3.869 12 C -0.170 4.170 13 C 0.162 3.838 14 N -0.590 5.590 15 C -0.252 4.252 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.908 5.908 19 Si 0.897 3.103 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.163 3.837 24 C 0.077 3.923 25 C 0.509 3.491 26 N -0.854 5.854 27 O -0.529 6.529 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.408 0.592 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.033 0.967 39 H 0.045 0.955 40 H 0.254 0.746 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.400 0.600 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.474 7.252 2.807 10.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.316 3.684 3 O -0.435 6.435 4 N -0.346 5.346 5 C 0.038 3.962 6 H 0.138 0.862 7 C -0.190 4.190 8 C 0.308 3.692 9 O -0.422 6.422 10 N -0.313 5.313 11 C 0.009 3.991 12 C -0.211 4.211 13 C 0.034 3.966 14 N -0.312 5.312 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.194 4.194 18 N -0.553 5.553 19 Si 0.727 3.273 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.037 3.963 24 C -0.048 4.048 25 C 0.292 3.708 26 N -0.419 5.419 27 O -0.403 6.403 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.244 0.756 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.229 0.771 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 6.918 8.417 2.466 11.170 hybrid contribution -0.527 -0.731 -0.671 1.123 sum 6.391 7.686 1.794 10.156 Atomic orbital electron populations 1.21828 0.91726 1.04677 1.04725 1.20615 0.90550 0.83113 0.74133 1.90652 1.70845 1.31504 1.50508 1.45503 1.04845 1.09571 1.74685 1.20452 0.83251 1.00025 0.92427 0.86238 1.22010 1.03242 0.98492 0.95210 1.20082 0.79502 0.82070 0.87517 1.90693 1.40149 1.38209 1.73110 1.47357 1.54933 1.18253 1.10751 1.20546 0.97413 1.00747 0.80380 1.21870 0.99096 1.00103 1.00008 1.20286 0.98048 0.92652 0.85647 1.43637 1.05391 1.82768 0.99375 1.19182 0.84866 1.35963 0.98151 0.91734 1.24957 0.97058 0.98202 0.99181 1.69999 1.28965 1.41214 1.15127 0.86369 0.83603 0.77406 0.79916 1.21297 1.21778 1.20514 1.21840 0.86843 0.93388 0.94240 1.22139 0.94962 0.89725 0.97991 1.21145 0.82625 0.75100 0.91959 1.43821 1.07267 1.78168 1.12684 1.90736 1.55307 1.48204 1.46095 0.88775 0.89159 0.90084 0.75613 0.87591 0.86809 0.92130 0.90455 0.92676 0.91309 0.94885 0.93638 0.93627 0.93948 0.90560 0.91728 0.91928 0.77143 0.76804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.30 36.01 0.37 -1.85 16 2 C 0.53 9.05 7.77 -10.98 -0.09 8.96 16 3 O -0.56 -11.26 16.76 5.56 0.09 -11.17 16 4 N -0.70 -11.29 3.75 -54.93 -0.21 -11.49 16 5 C 0.15 2.16 1.94 -69.08 -0.13 2.03 16 6 H 0.12 1.83 7.39 -51.93 -0.38 1.45 16 7 C -0.15 -1.95 3.74 -27.88 -0.10 -2.06 16 8 C 0.52 8.32 7.53 -10.99 -0.08 8.24 16 9 O -0.54 -10.21 14.79 5.56 0.08 -10.13 16 10 N -0.58 -8.96 2.47 -177.00 -0.44 -9.40 16 11 C 0.13 1.95 5.70 -5.91 -0.03 1.91 16 12 C -0.17 -2.79 5.64 -29.13 -0.16 -2.95 16 13 C 0.16 3.00 5.63 -5.23 -0.03 2.97 16 14 N -0.59 -12.85 2.54 -172.33 -0.44 -13.28 16 15 C -0.25 -6.29 9.27 -15.06 -0.14 -6.43 16 16 H 0.06 1.65 7.87 -52.49 -0.41 1.24 16 17 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 18 N -0.91 -23.97 10.90 55.49 0.60 -23.37 16 19 Si 0.90 20.70 29.58 -169.99 -5.03 15.67 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.16 3.22 5.17 -2.03 -0.01 3.21 16 24 C 0.08 1.14 5.00 -4.87 -0.02 1.11 16 25 C 0.51 7.40 7.46 -10.98 -0.08 7.31 16 26 N -0.85 -8.05 8.74 31.22 0.27 -7.78 16 27 O -0.53 -9.95 17.16 5.56 0.10 -9.86 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 31 H 0.41 6.53 8.60 -40.82 -0.35 6.18 16 32 H 0.11 0.98 6.66 -51.93 -0.35 0.63 16 33 H 0.11 1.67 7.31 -51.93 -0.38 1.29 16 34 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 35 H 0.08 1.20 7.12 -51.93 -0.37 0.83 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16 38 H 0.03 0.56 7.58 -51.93 -0.39 0.17 16 39 H 0.05 0.88 8.02 -51.93 -0.42 0.46 16 40 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 41 H 0.04 0.92 8.00 -51.93 -0.42 0.50 16 42 H 0.08 1.69 5.72 -51.93 -0.30 1.39 16 43 H 0.06 0.77 6.38 -51.93 -0.33 0.44 16 44 H 0.06 0.84 7.73 -51.93 -0.40 0.44 16 45 H 0.40 2.49 8.19 -40.82 -0.33 2.16 16 46 H 0.40 3.31 8.93 -40.82 -0.36 2.95 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -34.64 370.45 -6.83 -41.48 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.85 Total: 11.27 kcal Atomic # 6 Polarization: 23.09 SS G_CDS: -0.61 Total: 22.48 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -0.20 Total: -65.33 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: 0.27 Total: -31.16 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.64 -6.83 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197346147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.581 kcal (2) G-P(sol) polarization free energy of solvation -34.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds