Wall clock time and date at job start Tue Mar 31 2020 05:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 120.00236 * 2 1 4 4 N 1.34778 * 120.00133 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00108 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.47302 * 35.00660 * 5 4 2 7 7 C 1.53001 * 109.46971 * 155.00095 * 5 4 2 8 8 C 1.50703 * 109.47351 * 295.00007 * 7 5 4 9 9 O 1.21281 * 119.99835 * 0.02562 * 8 7 5 10 10 N 1.34773 * 119.99967 * 180.02562 * 8 7 5 11 11 C 1.48220 * 119.96991 * 180.02562 * 10 8 7 12 12 C 1.47132 * 110.34551 * 102.46166 * 11 10 8 13 13 C 1.53806 * 111.83776 * 58.29591 * 12 11 10 14 14 N 1.43463 * 107.96459 * 281.67022 * 13 12 11 15 15 C 1.36939 * 118.94271 * 273.63066 * 14 13 12 16 16 H 1.08001 * 119.99764 * 24.96659 * 15 14 13 17 17 C 1.38810 * 119.99982 * 204.97011 * 15 14 13 18 18 N 1.31622 * 119.99694 * 14.63203 * 17 15 14 19 19 Si 1.86798 * 120.00060 * 194.63929 * 17 15 14 20 20 H 1.48500 * 109.47127 * 89.99306 * 19 17 15 21 21 H 1.48498 * 109.46938 * 209.99800 * 19 17 15 22 22 H 1.48505 * 109.46913 * 329.99709 * 19 17 15 23 23 C 1.48856 * 122.11702 * 93.65134 * 14 13 12 24 24 C 1.43612 * 119.97543 * 359.72385 * 10 8 7 25 25 C 1.50701 * 109.47332 * 275.00053 * 5 4 2 26 26 N 1.34780 * 119.99852 * 179.97438 * 25 5 4 27 27 O 1.21272 * 119.99651 * 0.02562 * 25 5 4 28 28 H 1.08997 * 109.47030 * 269.99964 * 1 2 3 29 29 H 1.08996 * 109.47063 * 29.99843 * 1 2 3 30 30 H 1.09008 * 109.46964 * 150.00075 * 1 2 3 31 31 H 0.97000 * 119.99619 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.47004 * 175.00276 * 7 5 4 33 33 H 1.09001 * 109.47313 * 55.00430 * 7 5 4 34 34 H 1.08997 * 109.32609 * 222.73257 * 11 10 8 35 35 H 1.09006 * 109.31998 * 342.37145 * 11 10 8 36 36 H 1.08997 * 109.00870 * 178.90257 * 12 11 10 37 37 H 1.09002 * 109.01127 * 297.76780 * 12 11 10 38 38 H 1.08994 * 109.75979 * 41.29141 * 13 12 11 39 39 H 1.08998 * 109.76047 * 162.00288 * 13 12 11 40 40 H 0.97002 * 119.99764 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.48295 * 80.57763 * 23 14 13 42 42 H 1.08993 * 109.48358 * 200.60670 * 23 14 13 43 43 H 1.09003 * 108.87559 * 31.47304 * 24 10 8 44 44 H 1.09002 * 108.87696 * 149.90565 * 24 10 8 45 45 H 0.96997 * 119.99989 * 0.02562 * 26 25 5 46 46 H 0.96996 * 119.99660 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0095 -0.3250 0.5888 7 6 4.1561 -2.4742 0.6102 8 6 3.7580 -2.5397 2.0623 9 8 3.1278 -1.6307 2.5598 10 7 4.1023 -3.6083 2.8078 11 6 3.7099 -3.6723 4.2357 12 6 2.5571 -4.5699 4.4097 13 6 2.8574 -5.9913 3.9047 14 7 2.7526 -5.9839 2.4739 15 6 1.5260 -6.1816 1.8982 16 1 0.6271 -5.9430 2.4472 17 6 1.4379 -6.6886 0.6090 18 7 2.4902 -7.2455 0.0477 19 14 -0.1737 -6.5804 -0.3292 20 1 -0.2173 -5.3077 -1.0931 21 1 -0.2773 -7.7256 -1.2688 22 1 -1.3078 -6.6218 0.6287 23 6 3.9346 -5.7687 1.5950 24 6 4.8434 -4.6870 2.2165 25 6 4.1477 -1.0443 -1.4157 26 7 5.4728 -1.0225 -1.6615 27 8 3.3593 -0.9641 -2.3337 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8901 -0.5139 31 1 1.6959 -2.0072 0.0005 32 1 5.2424 -2.5132 0.5293 33 1 3.7213 -3.3188 0.0758 34 1 4.5487 -4.0444 4.8240 35 1 3.4418 -2.6738 4.5812 36 1 2.2996 -4.6161 5.4678 37 1 1.7084 -4.1693 3.8553 38 1 3.8659 -6.2815 4.1990 39 1 2.1352 -6.6917 4.3242 40 1 2.4285 -7.6002 -0.8531 41 1 4.4905 -6.7013 1.4986 42 1 3.6007 -5.4411 0.6106 43 1 5.4890 -4.2849 1.4358 44 1 5.4659 -5.1489 2.9829 45 1 6.1033 -1.0862 -0.9272 46 1 5.7957 -0.9437 -2.5727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197346147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:12 Heat of formation + Delta-G solvation = -106.644039 kcal Electronic energy + Delta-G solvation = -30349.173452 eV Core-core repulsion = 26273.584037 eV Total energy + Delta-G solvation = -4075.589416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77196 -40.76674 -39.80410 -38.58269 -36.14739 -35.79287 -34.81880 -34.36194 -32.79281 -32.25226 -30.13350 -29.16929 -27.35342 -26.14803 -25.36980 -23.24508 -22.12608 -21.43025 -21.32023 -19.91522 -19.07420 -18.53987 -18.19956 -18.00964 -17.41115 -17.30174 -16.94621 -16.52716 -16.07140 -15.99838 -15.81697 -15.53398 -15.24583 -14.94970 -14.65037 -14.55374 -14.37801 -13.95780 -13.81352 -13.58060 -13.37442 -13.17747 -13.08300 -13.01634 -12.80813 -12.65949 -12.47264 -12.29455 -12.03348 -11.65371 -11.63529 -11.49084 -11.38198 -11.03193 -10.80530 -10.68380 -10.44345 -10.12695 -9.46928 -8.59507 -7.81911 -5.23529 1.44096 1.44605 1.49374 1.53528 1.57929 1.70135 2.09145 2.20540 2.53251 2.66484 3.31551 3.45075 3.56156 3.77830 3.88109 4.00450 4.05543 4.22491 4.27090 4.34237 4.40149 4.42475 4.57338 4.58541 4.66288 4.67038 4.81736 4.90866 4.96553 4.99758 5.11508 5.28633 5.30689 5.35847 5.54720 5.66673 5.79439 5.85398 5.87191 6.35275 6.42180 6.44050 6.60560 7.16144 7.23287 7.26492 7.29353 8.01467 8.38031 9.21607 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010181 B = 0.005508 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.426324 B = 5082.698874 C = 5858.242610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.516 3.484 3 O -0.595 6.595 4 N -0.698 5.698 5 C 0.148 3.852 6 H 0.113 0.887 7 C -0.138 4.138 8 C 0.517 3.483 9 O -0.575 6.575 10 N -0.582 5.582 11 C 0.128 3.872 12 C -0.154 4.154 13 C 0.158 3.842 14 N -0.603 5.603 15 C -0.250 4.250 16 H 0.051 0.949 17 C -0.037 4.037 18 N -0.926 5.926 19 Si 0.942 3.058 20 H -0.285 1.285 21 H -0.299 1.299 22 H -0.279 1.279 23 C 0.168 3.832 24 C 0.088 3.912 25 C 0.507 3.493 26 N -0.826 5.826 27 O -0.579 6.579 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.407 0.593 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.029 0.971 38 H 0.057 0.943 39 H 0.031 0.969 40 H 0.247 0.753 41 H 0.020 0.980 42 H 0.048 0.952 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.419 0.581 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.272 7.479 3.762 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.305 3.695 3 O -0.476 6.476 4 N -0.347 5.347 5 C 0.038 3.962 6 H 0.131 0.869 7 C -0.178 4.178 8 C 0.305 3.695 9 O -0.455 6.455 10 N -0.312 5.312 11 C 0.007 3.993 12 C -0.195 4.195 13 C 0.031 3.969 14 N -0.326 5.326 15 C -0.381 4.381 16 H 0.069 0.931 17 C -0.233 4.233 18 N -0.573 5.573 19 Si 0.772 3.228 20 H -0.212 1.212 21 H -0.226 1.226 22 H -0.204 1.204 23 C 0.042 3.958 24 C -0.038 4.038 25 C 0.290 3.710 26 N -0.392 5.392 27 O -0.457 6.457 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.242 0.758 32 H 0.169 0.831 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.038 0.962 42 H 0.066 0.934 43 H 0.118 0.882 44 H 0.106 0.894 45 H 0.251 0.749 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 8.783 8.622 3.466 12.787 hybrid contribution -1.062 -0.844 -0.873 1.613 sum 7.721 7.778 2.593 11.262 Atomic orbital electron populations 1.21867 0.88999 1.05784 1.05825 1.21329 0.92137 0.82730 0.73305 1.90617 1.71914 1.32629 1.52488 1.45634 1.05838 1.09311 1.73943 1.20528 0.82548 1.00470 0.92651 0.86900 1.21981 1.05852 0.96998 0.92945 1.20509 0.78832 0.81760 0.88377 1.90685 1.41430 1.39443 1.73944 1.47455 1.54710 1.18029 1.11031 1.20631 0.97940 1.00117 0.80603 1.21666 0.98409 0.98583 1.00814 1.20423 0.99007 0.93595 0.83878 1.43874 1.04931 1.82917 1.00874 1.19279 0.86027 1.34624 0.98133 0.93073 1.25391 0.98958 0.98964 0.99965 1.70114 1.29895 1.42432 1.14881 0.85655 0.81525 0.76852 0.78773 1.21213 1.22628 1.20395 1.21691 0.86564 0.94169 0.93339 1.21996 0.93860 0.88288 0.99609 1.21132 0.83790 0.74827 0.91230 1.43568 1.05795 1.75719 1.14116 1.90716 1.56909 1.50943 1.47178 0.87539 0.88129 0.88910 0.75752 0.83101 0.88098 0.88651 0.91016 0.90144 0.95234 0.92448 0.95089 0.94331 0.96155 0.93370 0.88202 0.89416 0.74881 0.75632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 10.30 71.24 0.73 -3.53 16 2 C 0.52 17.85 7.77 87.66 0.68 18.53 16 3 O -0.59 -24.46 16.76 -3.03 -0.05 -24.51 16 4 N -0.70 -22.79 3.75 -446.09 -1.67 -24.46 16 5 C 0.15 4.19 1.94 44.25 0.09 4.27 16 6 H 0.11 3.39 7.39 -2.38 -0.02 3.37 16 7 C -0.14 -3.33 3.74 29.85 0.11 -3.21 16 8 C 0.52 15.55 7.53 87.66 0.66 16.21 16 9 O -0.57 -21.09 14.79 -3.03 -0.04 -21.13 16 10 N -0.58 -16.31 2.47 -832.29 -2.05 -18.36 16 11 C 0.13 3.43 5.70 84.22 0.48 3.91 16 12 C -0.15 -4.77 5.64 29.04 0.16 -4.60 16 13 C 0.16 5.59 5.63 87.21 0.49 6.08 16 14 N -0.60 -25.91 2.54 -699.11 -1.77 -27.68 16 15 C -0.25 -12.57 9.27 84.03 0.78 -11.80 16 16 H 0.05 2.67 7.87 -2.91 -0.02 2.64 16 17 C -0.04 -1.91 4.95 84.86 0.42 -1.49 16 18 N -0.93 -49.47 10.90 21.65 0.24 -49.23 16 19 Si 0.94 43.10 29.58 68.60 2.03 45.13 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 21 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 C 0.17 6.45 5.17 86.38 0.45 6.89 16 24 C 0.09 2.27 5.00 87.37 0.44 2.70 16 25 C 0.51 14.24 7.46 87.66 0.65 14.89 16 26 N -0.83 -13.59 8.74 -173.54 -1.52 -15.10 16 27 O -0.58 -21.82 17.16 -3.00 -0.05 -21.87 16 28 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.41 13.24 8.60 -92.71 -0.80 12.44 16 32 H 0.15 2.16 6.66 -2.39 -0.02 2.14 16 33 H 0.10 2.84 7.31 -2.39 -0.02 2.82 16 34 H 0.10 1.95 8.06 -2.39 -0.02 1.93 16 35 H 0.07 2.06 7.12 -2.38 -0.02 2.04 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.03 1.14 7.91 -2.39 -0.02 1.12 16 38 H 0.06 1.76 7.58 -2.39 -0.02 1.74 16 39 H 0.03 1.17 8.02 -2.39 -0.02 1.15 16 40 H 0.25 13.11 8.31 -92.71 -0.77 12.34 16 41 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16 42 H 0.05 2.12 5.72 -2.39 -0.01 2.10 16 43 H 0.10 1.92 6.38 -2.39 -0.02 1.90 16 44 H 0.09 1.92 7.73 -2.39 -0.02 1.90 16 45 H 0.42 3.74 8.19 -92.71 -0.76 2.98 16 46 H 0.41 5.80 8.93 -92.71 -0.83 4.97 16 Total: -1.00 -78.18 370.45 -0.10 -78.28 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: -1.34 Total: 30.09 kcal Atomic # 6 Polarization: 42.71 SS G_CDS: 6.14 Total: 48.86 kcal Atomic # 7 Polarization: -128.06 SS G_CDS: -6.78 Total: -134.84 kcal Atomic # 8 Polarization: -67.37 SS G_CDS: -0.15 Total: -67.51 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -78.18 -0.10 -78.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197346147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.364 kcal (2) G-P(sol) polarization free energy of solvation -78.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds