Wall clock time and date at job start Tue Mar 31 2020 05:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99937 * 2 1 4 4 H 1.48497 * 109.47243 * 240.00378 * 3 2 1 5 5 H 1.48500 * 109.47179 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47015 * 119.99992 * 3 2 1 7 7 C 1.38813 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00247 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99605 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99881 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47469 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.46727 * 60.00041 * 11 10 9 13 13 C 1.54804 * 109.47250 * 180.02562 * 11 10 9 14 14 N 1.45115 * 109.53024 * 187.89216 * 13 11 10 15 15 C 1.34784 * 118.75562 * 90.70818 * 14 13 11 16 16 O 1.21283 * 119.99649 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99774 * 179.72710 * 15 14 13 18 18 C 1.53003 * 109.46624 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.46813 * 179.97438 * 18 17 15 20 20 H 1.09002 * 110.27795 * 55.63765 * 19 18 17 21 21 C 1.54943 * 110.30910 * 177.83126 * 19 18 17 22 22 C 1.55308 * 100.94512 * 155.35962 * 21 19 18 23 23 C 1.54380 * 102.24823 * 325.86992 * 22 21 19 24 24 O 1.43241 * 107.59186 * 21.35361 * 23 22 21 25 25 C 1.47509 * 122.48857 * 270.98587 * 14 13 11 26 26 C 1.53195 * 111.23823 * 41.23087 * 25 14 13 27 27 C 1.51540 * 109.43159 * 40.26529 * 26 25 14 28 28 O 1.38020 * 109.46912 * 300.01834 * 11 10 9 29 29 H 0.96999 * 120.00185 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00451 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46858 * 60.00548 * 10 9 7 32 32 H 1.08996 * 109.47440 * 300.00090 * 10 9 7 33 33 H 1.09002 * 109.45764 * 67.87805 * 13 11 10 34 34 H 1.08995 * 109.45973 * 307.91406 * 13 11 10 35 35 H 1.09001 * 109.46809 * 299.99238 * 17 15 14 36 36 H 1.08993 * 109.47525 * 59.99679 * 17 15 14 37 37 H 1.09001 * 109.46782 * 299.99104 * 18 17 15 38 38 H 1.08993 * 109.47555 * 59.99547 * 18 17 15 39 39 H 1.09008 * 111.12525 * 273.27658 * 21 19 18 40 40 H 1.09003 * 111.12740 * 37.43754 * 21 19 18 41 41 H 1.08997 * 110.85007 * 207.67648 * 22 21 19 42 42 H 1.09003 * 111.01934 * 84.13203 * 22 21 19 43 43 H 1.09002 * 109.82603 * 261.84051 * 23 22 21 44 44 H 1.09002 * 109.82981 * 140.87190 * 23 22 21 45 45 H 1.09002 * 109.16393 * 161.75184 * 25 14 13 46 46 H 1.09001 * 109.16722 * 280.95045 * 25 14 13 47 47 H 1.08997 * 109.61414 * 280.22801 * 26 25 14 48 48 H 1.09006 * 109.42960 * 160.19272 * 26 25 14 49 49 H 1.08997 * 109.58882 * 148.71755 * 27 26 25 50 50 H 1.09005 * 109.70490 * 28.36115 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 1 0.4370 -4.7614 -0.8918 13 6 1.8380 -6.1603 -0.0026 14 7 0.9074 -7.2578 -0.1908 15 6 0.6431 -7.6761 -1.4445 16 8 1.1792 -7.1368 -2.3893 17 6 -0.3142 -8.8175 -1.6719 18 6 -0.4352 -9.0903 -3.1725 19 6 -1.4066 -10.2496 -3.4033 20 1 -2.3688 -10.0346 -2.9384 21 6 -1.5858 -10.5072 -4.9207 22 6 -2.0129 -12.0004 -4.9179 23 6 -1.2103 -12.5684 -3.7278 24 8 -0.8606 -11.4698 -2.8777 25 6 0.2352 -7.9289 0.9377 26 6 -0.2242 -6.9164 1.9916 27 6 -0.7806 -5.6875 1.3012 28 8 0.2706 -4.7471 1.1250 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 2.6854 -3.7149 0.8879 32 1 2.6841 -3.7141 -0.8921 33 1 2.3548 -6.2816 0.9494 34 1 2.5664 -6.1587 -0.8134 35 1 0.0590 -9.7101 -1.1697 36 1 -1.2929 -8.5566 -1.2695 37 1 -0.8081 -8.1979 -3.6750 38 1 0.5437 -9.3514 -3.5745 39 1 -2.3704 -9.8749 -5.3365 40 1 -0.6467 -10.3681 -5.4563 41 1 -1.7240 -12.4882 -5.8488 42 1 -3.0846 -12.1002 -4.7460 43 1 -0.3063 -13.0571 -4.0911 44 1 -1.8220 -13.2825 -3.1764 45 1 -0.6312 -8.4750 0.5646 46 1 0.9281 -8.6319 1.4002 47 1 0.6214 -6.6299 2.6168 48 1 -0.9991 -7.3659 2.6128 49 1 -1.5659 -5.2473 1.9156 50 1 -1.1894 -5.9652 0.3296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199903646.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:10 Heat of formation + Delta-G solvation = -115.611269 kcal Electronic energy + Delta-G solvation = -28706.208382 eV Core-core repulsion = 24733.770462 eV Total energy + Delta-G solvation = -3972.437920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.60919 -39.76392 -38.43790 -35.60634 -34.54981 -33.89274 -32.77574 -32.46350 -30.86305 -29.66343 -28.29624 -26.64373 -25.37169 -24.12960 -22.55325 -21.99157 -21.63448 -21.15781 -20.84437 -18.87844 -17.46183 -17.30967 -17.08961 -16.46920 -16.28534 -16.11030 -15.94698 -15.15821 -14.96123 -14.61390 -14.23204 -14.11513 -13.89161 -13.57775 -13.45928 -13.14656 -13.00954 -12.95018 -12.55417 -12.25157 -12.20577 -12.13956 -11.94690 -11.79927 -11.56873 -11.32578 -11.22696 -11.14439 -11.09890 -10.92238 -10.75909 -10.72493 -10.22029 -10.01214 -9.84819 -9.72339 -9.60034 -9.33640 -8.77952 -8.49034 -6.79716 -5.64943 -2.92861 2.61530 2.92162 3.44130 3.51584 3.54895 3.56557 4.01505 4.08275 4.22450 4.46501 4.50400 4.63726 4.68473 4.70208 4.74220 4.80743 4.95318 5.00449 5.02419 5.16093 5.28083 5.30211 5.32305 5.36088 5.40308 5.43243 5.46710 5.50404 5.53254 5.59127 5.66084 5.67914 5.69476 5.85205 5.89761 6.00571 6.04175 6.05889 6.15469 6.39302 6.57227 6.68782 6.72114 6.84493 7.28229 7.78296 8.06603 8.17176 8.53578 9.64829 10.23852 10.60126 11.58006 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019374 B = 0.002369 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.916796 B =11817.021147 C =12546.458206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.166 3.834 11 C 0.089 3.911 12 H 0.050 0.950 13 C 0.081 3.919 14 N -0.611 5.611 15 C 0.505 3.495 16 O -0.534 6.534 17 C -0.136 4.136 18 C -0.103 4.103 19 C 0.080 3.920 20 H 0.072 0.928 21 C -0.152 4.152 22 C -0.157 4.157 23 C 0.051 3.949 24 O -0.380 6.380 25 C 0.106 3.894 26 C -0.167 4.167 27 C 0.074 3.926 28 O -0.367 6.367 29 H 0.254 0.746 30 H 0.387 0.613 31 H 0.026 0.974 32 H 0.034 0.966 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 -28.636 -3.476 29.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.369 5.369 10 C 0.038 3.962 11 C 0.029 3.971 12 H 0.068 0.932 13 C -0.043 4.043 14 N -0.345 5.345 15 C 0.294 3.706 16 O -0.411 6.411 17 C -0.176 4.176 18 C -0.140 4.140 19 C 0.023 3.977 20 H 0.090 0.910 21 C -0.190 4.190 22 C -0.195 4.195 23 C -0.026 4.026 24 O -0.300 6.300 25 C -0.017 4.017 26 C -0.206 4.206 27 C -0.003 4.003 28 O -0.285 6.285 29 H 0.064 0.936 30 H 0.221 0.779 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.107 0.893 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.230 -28.112 -3.646 28.826 hybrid contribution -0.110 0.547 -0.243 0.608 sum -5.340 -27.565 -3.888 28.346 Atomic orbital electron populations 1.69673 1.05089 1.25542 1.57905 1.24738 0.95526 0.97615 1.03275 0.86251 0.78464 0.83585 0.77793 1.21327 1.21767 1.21329 1.19198 0.90968 0.84177 1.42418 0.91250 1.42204 1.06048 0.99465 1.89225 1.20615 0.92404 0.84741 0.98464 1.22262 0.92526 0.94067 0.88213 0.93172 1.22403 0.92566 0.86108 1.03228 1.47969 1.45061 1.35164 1.06261 1.20845 0.82697 0.84516 0.82579 1.90723 1.51555 1.57766 1.41032 1.21672 0.99476 0.97575 0.98875 1.21512 1.00510 0.97027 0.94989 1.23059 0.96517 0.85394 0.92776 0.91004 1.23306 1.02986 0.96085 0.96629 1.23122 1.00912 0.96124 0.99341 1.23094 0.98744 0.89862 0.90890 1.88415 1.76562 1.15634 1.49395 1.21916 0.97276 0.94883 0.87594 1.22454 1.02729 0.96947 0.98437 1.22106 0.89909 0.89013 0.99284 1.86439 1.44532 1.54341 1.43231 0.93603 0.77882 0.95618 0.94826 0.90003 0.88931 0.88347 0.89115 0.89727 0.90347 0.89705 0.89980 0.90060 0.90546 0.91423 0.91557 0.89859 0.91529 0.89927 0.89706 0.89346 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.49 13.06 55.49 0.72 -28.76 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 23.26 29.55 -169.99 -5.02 18.23 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -19.86 5.49 -59.91 -0.33 -20.18 16 10 C 0.17 3.65 5.95 -4.04 -0.02 3.63 16 11 C 0.09 1.66 2.74 -25.78 -0.07 1.59 16 12 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 13 C 0.08 1.21 4.87 -3.83 -0.02 1.19 16 14 N -0.61 -7.77 2.20 -172.71 -0.38 -8.15 16 15 C 0.51 6.87 7.63 -10.98 -0.08 6.79 16 16 O -0.53 -9.41 15.41 5.56 0.09 -9.33 16 17 C -0.14 -1.32 3.96 -27.88 -0.11 -1.43 16 18 C -0.10 -1.00 4.25 -26.73 -0.11 -1.11 16 19 C 0.08 0.64 3.43 -25.70 -0.09 0.55 16 20 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 21 C -0.15 -1.01 6.57 -24.48 -0.16 -1.17 16 22 C -0.16 -0.86 7.02 -24.78 -0.17 -1.03 16 23 C 0.05 0.34 7.79 37.88 0.30 0.64 16 24 O -0.38 -3.54 10.69 -35.23 -0.38 -3.92 16 25 C 0.11 0.97 5.96 -3.39 -0.02 0.95 16 26 C -0.17 -1.65 5.78 -27.37 -0.16 -1.81 16 27 C 0.07 1.00 6.37 36.42 0.23 1.23 16 28 O -0.37 -6.75 9.18 -26.55 -0.24 -6.99 16 29 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.39 11.27 7.53 -40.82 -0.31 10.96 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 34 H 0.09 1.48 7.27 -51.93 -0.38 1.10 16 35 H 0.10 0.87 7.82 -51.93 -0.41 0.46 16 36 H 0.09 0.72 7.39 -51.93 -0.38 0.34 16 37 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 38 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.08 0.57 8.06 -51.93 -0.42 0.16 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.59 5.88 -51.93 -0.31 0.28 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.91 8.01 -51.93 -0.42 0.49 16 48 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.05 0.61 7.41 -51.93 -0.38 0.23 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -35.68 392.22 -9.25 -44.93 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -8.88 Total: 5.96 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -0.74 Total: 2.30 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.02 Total: -57.09 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.53 Total: -20.24 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.68 -9.25 -44.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199903646.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.676 kcal (2) G-P(sol) polarization free energy of solvation -35.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds