Wall clock time and date at job start Tue Mar 31 2020 05:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99937 * 2 1 4 4 H 1.48497 * 109.47243 * 240.00378 * 3 2 1 5 5 H 1.48500 * 109.47179 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47015 * 119.99992 * 3 2 1 7 7 C 1.38813 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00247 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99605 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99881 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47469 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.46727 * 60.00041 * 11 10 9 13 13 C 1.54804 * 109.47250 * 180.02562 * 11 10 9 14 14 N 1.45115 * 109.53024 * 187.89216 * 13 11 10 15 15 C 1.34784 * 118.75562 * 90.70818 * 14 13 11 16 16 O 1.21283 * 119.99649 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99774 * 179.72710 * 15 14 13 18 18 C 1.53003 * 109.46624 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.46813 * 179.97438 * 18 17 15 20 20 H 1.09002 * 110.27795 * 55.63765 * 19 18 17 21 21 C 1.54943 * 110.30910 * 177.83126 * 19 18 17 22 22 C 1.55308 * 100.94512 * 155.35962 * 21 19 18 23 23 C 1.54380 * 102.24823 * 325.86992 * 22 21 19 24 24 O 1.43241 * 107.59186 * 21.35361 * 23 22 21 25 25 C 1.47509 * 122.48857 * 270.98587 * 14 13 11 26 26 C 1.53195 * 111.23823 * 41.23087 * 25 14 13 27 27 C 1.51540 * 109.43159 * 40.26529 * 26 25 14 28 28 O 1.38020 * 109.46912 * 300.01834 * 11 10 9 29 29 H 0.96999 * 120.00185 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00451 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46858 * 60.00548 * 10 9 7 32 32 H 1.08996 * 109.47440 * 300.00090 * 10 9 7 33 33 H 1.09002 * 109.45764 * 67.87805 * 13 11 10 34 34 H 1.08995 * 109.45973 * 307.91406 * 13 11 10 35 35 H 1.09001 * 109.46809 * 299.99238 * 17 15 14 36 36 H 1.08993 * 109.47525 * 59.99679 * 17 15 14 37 37 H 1.09001 * 109.46782 * 299.99104 * 18 17 15 38 38 H 1.08993 * 109.47555 * 59.99547 * 18 17 15 39 39 H 1.09008 * 111.12525 * 273.27658 * 21 19 18 40 40 H 1.09003 * 111.12740 * 37.43754 * 21 19 18 41 41 H 1.08997 * 110.85007 * 207.67648 * 22 21 19 42 42 H 1.09003 * 111.01934 * 84.13203 * 22 21 19 43 43 H 1.09002 * 109.82603 * 261.84051 * 23 22 21 44 44 H 1.09002 * 109.82981 * 140.87190 * 23 22 21 45 45 H 1.09002 * 109.16393 * 161.75184 * 25 14 13 46 46 H 1.09001 * 109.16722 * 280.95045 * 25 14 13 47 47 H 1.08997 * 109.61414 * 280.22801 * 26 25 14 48 48 H 1.09006 * 109.42960 * 160.19272 * 26 25 14 49 49 H 1.08997 * 109.58882 * 148.71755 * 27 26 25 50 50 H 1.09005 * 109.70490 * 28.36115 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 1 0.4370 -4.7614 -0.8918 13 6 1.8380 -6.1603 -0.0026 14 7 0.9074 -7.2578 -0.1908 15 6 0.6431 -7.6761 -1.4445 16 8 1.1792 -7.1368 -2.3893 17 6 -0.3142 -8.8175 -1.6719 18 6 -0.4352 -9.0903 -3.1725 19 6 -1.4066 -10.2496 -3.4033 20 1 -2.3688 -10.0346 -2.9384 21 6 -1.5858 -10.5072 -4.9207 22 6 -2.0129 -12.0004 -4.9179 23 6 -1.2103 -12.5684 -3.7278 24 8 -0.8606 -11.4698 -2.8777 25 6 0.2352 -7.9289 0.9377 26 6 -0.2242 -6.9164 1.9916 27 6 -0.7806 -5.6875 1.3012 28 8 0.2706 -4.7471 1.1250 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 2.6854 -3.7149 0.8879 32 1 2.6841 -3.7141 -0.8921 33 1 2.3548 -6.2816 0.9494 34 1 2.5664 -6.1587 -0.8134 35 1 0.0590 -9.7101 -1.1697 36 1 -1.2929 -8.5566 -1.2695 37 1 -0.8081 -8.1979 -3.6750 38 1 0.5437 -9.3514 -3.5745 39 1 -2.3704 -9.8749 -5.3365 40 1 -0.6467 -10.3681 -5.4563 41 1 -1.7240 -12.4882 -5.8488 42 1 -3.0846 -12.1002 -4.7460 43 1 -0.3063 -13.0571 -4.0911 44 1 -1.8220 -13.2825 -3.1764 45 1 -0.6312 -8.4750 0.5646 46 1 0.9281 -8.6319 1.4002 47 1 0.6214 -6.6299 2.6168 48 1 -0.9991 -7.3659 2.6128 49 1 -1.5659 -5.2473 1.9156 50 1 -1.1894 -5.9652 0.3296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199903646.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:10 Heat of formation + Delta-G solvation = -140.010210 kcal Electronic energy + Delta-G solvation = -28707.266399 eV Core-core repulsion = 24733.770462 eV Total energy + Delta-G solvation = -3973.495938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.70042 -40.41192 -39.65193 -36.92361 -36.23234 -34.77916 -34.20244 -32.99774 -32.66804 -30.74175 -29.44614 -27.77571 -26.70449 -25.39156 -24.08715 -22.83085 -22.45868 -22.30031 -21.80037 -19.87404 -19.26733 -18.42851 -17.93379 -17.71309 -17.54099 -17.04617 -16.71126 -16.49683 -16.20069 -15.69099 -15.59298 -15.15622 -14.99687 -14.81891 -14.61955 -14.44345 -14.11927 -13.96952 -13.79147 -13.59881 -13.26603 -13.12381 -12.92086 -12.73583 -12.68538 -12.60207 -12.36286 -12.29292 -12.15416 -12.04236 -11.86637 -11.81936 -11.77586 -11.66488 -11.45957 -10.97589 -10.82516 -10.55262 -10.42374 -9.64550 -9.02207 -7.94468 -5.24555 1.45814 1.50847 1.56199 1.57222 1.93797 2.56024 2.72265 2.88039 3.38295 3.40502 3.63403 3.64098 3.76104 3.87286 3.97493 4.02449 4.05775 4.08872 4.12999 4.19004 4.29501 4.34785 4.36820 4.42371 4.48435 4.51715 4.56490 4.67696 4.69700 4.78608 4.82927 4.84781 4.87410 4.89246 4.94598 5.01614 5.08256 5.10364 5.12897 5.19286 5.23031 5.30881 5.45989 5.53642 6.12344 6.25719 6.28952 6.75174 7.12965 7.32019 8.06121 8.32029 9.29266 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019374 B = 0.002369 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.916796 B =11817.021147 C =12546.458206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.981 3.019 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.250 4.250 8 H 0.077 0.923 9 N -0.739 5.739 10 C 0.162 3.838 11 C 0.107 3.893 12 H 0.019 0.981 13 C 0.094 3.906 14 N -0.610 5.610 15 C 0.498 3.502 16 O -0.585 6.585 17 C -0.125 4.125 18 C -0.100 4.100 19 C 0.082 3.918 20 H 0.086 0.914 21 C -0.156 4.156 22 C -0.151 4.151 23 C 0.043 3.957 24 O -0.400 6.400 25 C 0.100 3.900 26 C -0.156 4.156 27 C 0.064 3.936 28 O -0.397 6.397 29 H 0.252 0.748 30 H 0.374 0.626 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.112 0.888 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.122 0.878 49 H 0.094 0.906 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.331 -30.723 -2.462 31.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.809 3.191 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.381 4.381 8 H 0.095 0.905 9 N -0.382 5.382 10 C 0.035 3.965 11 C 0.046 3.954 12 H 0.037 0.963 13 C -0.031 4.031 14 N -0.342 5.342 15 C 0.288 3.712 16 O -0.465 6.465 17 C -0.164 4.164 18 C -0.139 4.139 19 C 0.025 3.975 20 H 0.104 0.896 21 C -0.194 4.194 22 C -0.188 4.188 23 C -0.033 4.033 24 O -0.321 6.321 25 C -0.020 4.020 26 C -0.194 4.194 27 C -0.012 4.012 28 O -0.316 6.316 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.130 0.870 46 H 0.109 0.891 47 H 0.091 0.909 48 H 0.140 0.860 49 H 0.112 0.888 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.732 -30.262 -2.602 30.909 hybrid contribution 0.029 1.136 -0.538 1.257 sum -5.703 -29.125 -3.140 29.844 Atomic orbital electron populations 1.69851 1.06772 1.26185 1.59327 1.25675 0.96518 1.01382 1.03516 0.85107 0.77125 0.78592 0.78282 1.20319 1.21912 1.20111 1.19655 0.91575 0.85279 1.41620 0.90469 1.42398 1.05627 1.00861 1.89303 1.20756 0.93173 0.84217 0.98342 1.21860 0.91765 0.94549 0.87204 0.96289 1.22074 0.92320 0.85221 1.03503 1.48102 1.44571 1.34235 1.07336 1.21621 0.82541 0.84923 0.82110 1.90701 1.53540 1.59598 1.42678 1.21691 0.99477 0.96292 0.98987 1.21451 0.99912 0.97448 0.95046 1.23047 0.96179 0.84453 0.93779 0.89584 1.23331 1.02949 0.97363 0.95714 1.23118 1.01408 0.94932 0.99373 1.23268 0.99288 0.89468 0.91315 1.88375 1.77089 1.16372 1.50246 1.22258 0.98665 0.94749 0.86355 1.22376 1.03297 0.95312 0.98451 1.22418 0.89060 0.89933 0.99814 1.86359 1.45810 1.56788 1.42648 0.93962 0.79441 0.94979 0.94952 0.88212 0.90430 0.86663 0.86593 0.90947 0.92491 0.88741 0.90978 0.88980 0.89373 0.91360 0.90338 0.87040 0.89138 0.90857 0.86010 0.88752 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.73 13.06 21.65 0.28 -62.45 16 2 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 3 Si 0.98 48.26 29.55 68.60 2.03 50.29 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.25 -15.00 9.99 84.03 0.84 -14.16 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.74 -41.82 5.49 -343.46 -1.88 -43.71 16 10 C 0.16 7.37 5.95 86.38 0.51 7.88 16 11 C 0.11 4.07 2.74 31.21 0.09 4.16 16 12 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 13 C 0.09 2.81 4.87 87.25 0.42 3.23 16 14 N -0.61 -14.75 2.20 -818.70 -1.80 -16.56 16 15 C 0.50 13.34 7.63 87.65 0.67 14.01 16 16 O -0.59 -21.46 15.41 -3.04 -0.05 -21.50 16 17 C -0.13 -2.20 3.96 29.85 0.12 -2.08 16 18 C -0.10 -1.93 4.25 30.60 0.13 -1.80 16 19 C 0.08 1.20 3.43 31.26 0.11 1.31 16 20 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 21 C -0.16 -1.89 6.57 32.05 0.21 -1.68 16 22 C -0.15 -1.34 7.02 31.86 0.22 -1.11 16 23 C 0.04 0.50 7.79 72.45 0.56 1.06 16 24 O -0.40 -6.74 10.69 -148.98 -1.59 -8.34 16 25 C 0.10 1.48 5.96 86.25 0.51 2.00 16 26 C -0.16 -2.61 5.78 30.18 0.17 -2.43 16 27 C 0.06 1.65 6.37 71.50 0.46 2.10 16 28 O -0.40 -14.75 9.18 -117.93 -1.08 -15.84 16 29 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.37 22.72 7.53 -92.71 -0.70 22.02 16 31 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 2.62 8.12 -2.39 -0.02 2.60 16 34 H 0.08 2.56 7.27 -2.39 -0.02 2.55 16 35 H 0.12 1.69 7.82 -2.39 -0.02 1.68 16 36 H 0.12 1.48 7.39 -2.39 -0.02 1.46 16 37 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 38 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 39 H 0.09 0.94 8.14 -2.38 -0.02 0.93 16 40 H 0.07 1.00 8.06 -2.39 -0.02 0.98 16 41 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.11 1.06 5.88 -2.39 -0.01 1.04 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.42 8.01 -2.39 -0.02 1.40 16 48 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 49 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 50 H 0.04 1.13 7.41 -2.38 -0.02 1.12 16 Total: -1.00 -80.28 392.22 1.61 -78.67 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.21 Total: 31.28 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 5.50 Total: 8.15 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -3.41 Total: -122.72 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -2.72 Total: -45.68 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -80.28 1.61 -78.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199903646.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.343 kcal (2) G-P(sol) polarization free energy of solvation -80.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds