Wall clock time and date at job start Tue Mar 31 2020 05:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48500 * 109.46799 * 269.99862 * 3 2 1 5 5 H 1.48502 * 109.47375 * 29.99500 * 3 2 1 6 6 H 1.48495 * 109.47317 * 149.99842 * 3 2 1 7 7 C 1.38813 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99838 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00190 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00086 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46945 * 180.02562 * 10 9 7 12 12 H 1.08988 * 109.47303 * 305.00359 * 11 10 9 13 13 C 1.54288 * 109.53624 * 185.02094 * 11 10 9 14 14 N 1.45121 * 109.82815 * 172.11798 * 13 11 10 15 15 C 1.34785 * 118.75520 * 269.42358 * 14 13 11 16 16 O 1.21276 * 120.00074 * 5.08917 * 15 14 13 17 17 C 1.50699 * 119.99685 * 185.08610 * 15 14 13 18 18 H 1.09000 * 108.96409 * 23.98347 * 17 15 14 19 19 C 1.54203 * 108.97659 * 265.18049 * 17 15 14 20 20 C 1.50625 * 109.13251 * 161.88039 * 19 17 15 21 21 C 1.53914 * 112.41475 * 90.24215 * 20 19 17 22 22 O 1.43987 * 113.46819 * 317.99388 * 21 20 19 23 23 C 1.40321 * 116.57962 * 317.86081 * 22 21 20 24 24 C 1.46285 * 108.90754 * 142.74788 * 17 15 14 25 25 C 1.47510 * 122.48654 * 89.14372 * 14 13 11 26 26 C 1.53574 * 111.02457 * 318.63185 * 25 14 13 27 27 C 1.51533 * 109.58166 * 320.02094 * 26 25 14 28 28 O 1.38015 * 109.46772 * 65.00842 * 11 10 9 29 29 H 0.96994 * 120.00229 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99484 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47008 * 60.00940 * 10 9 7 32 32 H 1.09000 * 109.47146 * 300.00702 * 10 9 7 33 33 H 1.09002 * 109.22149 * 52.07002 * 13 11 10 34 34 H 1.08995 * 109.41310 * 292.28607 * 13 11 10 35 35 H 1.09000 * 109.53923 * 281.79254 * 19 17 15 36 36 H 1.08995 * 109.54090 * 41.96189 * 19 17 15 37 37 H 1.09006 * 108.88342 * 211.13342 * 20 19 17 38 38 H 1.08993 * 108.88614 * 329.59644 * 20 19 17 39 39 H 1.09008 * 108.69983 * 196.94579 * 21 20 19 40 40 H 1.08994 * 108.53756 * 78.93849 * 21 20 19 41 41 H 1.08993 * 109.59883 * 335.26930 * 23 22 21 42 42 H 1.09007 * 109.59901 * 214.80017 * 23 22 21 43 43 H 1.08998 * 108.93749 * 302.71152 * 24 17 15 44 44 H 1.09003 * 108.94105 * 61.40424 * 24 17 15 45 45 H 1.08995 * 109.16545 * 79.02924 * 25 14 13 46 46 H 1.08996 * 109.16733 * 198.28495 * 25 14 13 47 47 H 1.08993 * 109.45352 * 80.06027 * 26 25 14 48 48 H 1.08999 * 109.44637 * 199.99058 * 26 25 14 49 49 H 1.08999 * 109.58797 * 211.18053 * 27 26 25 50 50 H 1.08991 * 109.59452 * 331.47103 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.6165 -2.1910 0.0000 12 1 5.8659 -1.5451 -0.8417 13 6 6.3885 -3.5208 -0.1273 14 7 7.8024 -3.2530 -0.3148 15 6 8.2773 -3.1254 -1.5697 16 8 7.5137 -3.1422 -2.5117 17 6 9.7573 -2.9618 -1.8022 18 1 10.2977 -3.3833 -0.9547 19 6 10.0850 -1.4587 -1.9085 20 6 11.5625 -1.2592 -1.6940 21 6 12.3603 -1.3230 -3.0087 22 8 11.9285 -2.3758 -3.8909 23 6 11.6432 -3.6148 -3.2974 24 6 10.1301 -3.6907 -3.0145 25 6 8.7384 -3.1094 0.8163 26 6 8.1070 -2.2932 1.9537 27 6 7.3113 -1.1423 1.3718 28 8 5.9682 -1.5664 1.1794 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3619 -0.0004 31 1 3.8487 -3.0424 -0.8899 32 1 3.8492 -3.0422 0.8902 33 1 6.0074 -4.0764 -0.9841 34 1 6.2475 -4.1097 0.7790 35 1 9.8078 -1.0942 -2.8977 36 1 9.5289 -0.9097 -1.1487 37 1 11.7232 -0.2870 -1.2280 38 1 11.9294 -2.0352 -1.0223 39 1 13.4132 -1.4758 -2.7714 40 1 12.2543 -0.3689 -3.5249 41 1 12.1952 -3.7080 -2.3622 42 1 11.9292 -4.4194 -3.9750 43 1 9.8435 -4.7362 -2.9008 44 1 9.5914 -3.2668 -3.8620 45 1 9.0029 -4.0986 1.1897 46 1 9.6407 -2.6039 0.4721 47 1 7.4455 -2.9340 2.5364 48 1 8.8933 -1.9013 2.5989 49 1 7.3327 -0.2980 2.0608 50 1 7.7435 -0.8453 0.4163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200380902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:05 Heat of formation + Delta-G solvation = -105.043337 kcal Electronic energy + Delta-G solvation = -29911.490386 eV Core-core repulsion = 25939.510725 eV Total energy + Delta-G solvation = -3971.979661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18677 -39.61825 -38.43149 -35.82443 -35.13674 -34.75622 -33.00574 -32.85107 -31.14404 -29.43879 -27.75174 -26.77793 -26.29766 -25.13758 -22.76837 -21.76335 -21.35259 -21.13707 -21.00775 -19.09307 -18.04407 -17.62836 -16.95391 -16.62566 -16.54098 -16.27221 -15.87146 -15.54923 -14.96140 -14.68430 -14.43152 -14.28598 -13.91205 -13.75449 -13.69128 -13.42092 -13.24851 -12.91224 -12.68871 -12.58881 -12.44460 -12.21958 -11.93986 -11.84204 -11.77465 -11.52497 -11.22731 -11.10441 -11.05923 -10.94240 -10.81132 -10.78006 -10.35850 -10.06267 -9.95963 -9.66228 -9.52749 -9.51650 -8.83165 -8.65940 -7.14223 -5.69099 -3.03423 2.43127 2.75281 3.43886 3.45408 3.50065 3.51611 3.81599 4.05435 4.14787 4.36242 4.44170 4.48107 4.57488 4.58468 4.67999 4.78602 4.82648 4.88891 4.97146 5.08982 5.10721 5.17728 5.19130 5.21206 5.29714 5.34309 5.39589 5.43227 5.50012 5.55350 5.60301 5.61128 5.66089 5.73081 5.80393 5.83424 5.88278 5.97571 5.99305 6.03289 6.42197 6.58644 6.69941 6.99431 7.12808 7.85643 8.02410 8.06853 8.49966 9.29568 10.02198 10.23031 11.49452 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017376 B = 0.003083 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.073771 B = 9081.147736 C = 9310.195968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.004 3.996 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.240 4.240 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.171 3.829 11 C 0.084 3.916 12 H 0.052 0.948 13 C 0.082 3.918 14 N -0.611 5.611 15 C 0.509 3.491 16 O -0.526 6.526 17 C -0.101 4.101 18 H 0.087 0.913 19 C -0.107 4.107 20 C -0.152 4.152 21 C 0.062 3.938 22 O -0.382 6.382 23 C 0.072 3.928 24 C -0.143 4.143 25 C 0.104 3.896 26 C -0.166 4.166 27 C 0.072 3.928 28 O -0.371 6.371 29 H 0.259 0.741 30 H 0.363 0.637 31 H 0.044 0.956 32 H 0.035 0.965 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.088 0.912 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.422 -7.174 0.626 32.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.192 4.192 3 Si 0.713 3.287 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.108 0.892 9 N -0.395 5.395 10 C 0.043 3.957 11 C 0.024 3.976 12 H 0.070 0.930 13 C -0.041 4.041 14 N -0.344 5.344 15 C 0.296 3.704 16 O -0.401 6.401 17 C -0.122 4.122 18 H 0.105 0.895 19 C -0.145 4.145 20 C -0.190 4.190 21 C -0.014 4.014 22 O -0.301 6.301 23 C -0.005 4.005 24 C -0.181 4.181 25 C -0.018 4.018 26 C -0.205 4.205 27 C -0.004 4.004 28 O -0.290 6.290 29 H 0.069 0.931 30 H 0.196 0.804 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.106 0.894 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 30.619 -7.233 0.087 31.462 hybrid contribution 0.808 1.074 0.348 1.388 sum 31.427 -6.159 0.436 32.028 Atomic orbital electron populations 1.69701 1.05073 1.25745 1.57933 1.24639 0.95221 0.97176 1.02144 0.86544 0.79432 0.84949 0.77753 1.21169 1.21766 1.20074 1.19064 0.80547 0.94781 1.42616 0.89177 1.42571 1.03922 1.02064 1.90992 1.20587 0.85615 0.90125 0.99359 1.22237 0.96237 0.92131 0.86993 0.93040 1.22278 0.79489 0.98845 1.03532 1.47978 1.09056 1.71471 1.05921 1.20819 0.90814 0.76114 0.82643 1.90743 1.59143 1.48718 1.41483 1.20473 0.93048 0.98152 1.00515 0.89537 1.21269 0.95786 0.93453 1.04003 1.21951 0.95515 1.03293 0.98249 1.22973 0.96506 0.91109 0.90853 1.87499 1.87441 1.20022 1.35125 1.22296 0.93710 0.86281 0.98215 1.21056 0.97812 1.00844 0.98402 1.22024 0.92171 1.00518 0.87132 1.22501 1.01016 0.99032 0.97925 1.22122 0.82895 0.95626 0.99799 1.86428 1.26931 1.76890 1.38718 0.93138 0.80374 0.93869 0.94670 0.88846 0.89736 0.89953 0.91244 0.90109 0.91576 0.93069 0.89357 0.93063 0.89389 0.91002 0.89391 0.91453 0.89846 0.89779 0.89666 0.89366 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.42 13.97 55.49 0.78 -29.65 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 23.24 27.73 -169.99 -4.71 18.52 16 4 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.27 -6.92 6.52 56.52 0.37 -6.55 16 7 C -0.24 -7.16 10.47 -15.06 -0.16 -7.32 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 9 N -0.75 -19.25 5.34 -59.91 -0.32 -19.57 16 10 C 0.17 3.56 5.92 -4.04 -0.02 3.53 16 11 C 0.08 1.45 2.67 -26.06 -0.07 1.38 16 12 H 0.05 0.99 8.14 -51.94 -0.42 0.57 16 13 C 0.08 1.13 4.78 -4.11 -0.02 1.11 16 14 N -0.61 -6.99 2.21 -172.80 -0.38 -7.37 16 15 C 0.51 6.42 6.43 -10.98 -0.07 6.35 16 16 O -0.53 -9.00 15.70 5.56 0.09 -8.91 16 17 C -0.10 -0.88 1.29 -94.34 -0.12 -1.00 16 18 H 0.09 0.55 5.65 -51.93 -0.29 0.26 16 19 C -0.11 -0.89 4.61 -27.29 -0.13 -1.01 16 20 C -0.15 -0.85 5.33 -27.44 -0.15 -1.00 16 21 C 0.06 0.40 6.67 37.63 0.25 0.65 16 22 O -0.38 -3.44 10.17 -33.68 -0.34 -3.79 16 23 C 0.07 0.52 6.38 37.74 0.24 0.76 16 24 C -0.14 -1.30 4.37 -29.34 -0.13 -1.42 16 25 C 0.10 0.81 5.65 -3.19 -0.02 0.79 16 26 C -0.17 -1.41 5.78 -27.18 -0.16 -1.57 16 27 C 0.07 0.87 6.37 36.42 0.23 1.10 16 28 O -0.37 -6.24 9.38 -26.54 -0.25 -6.49 16 29 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 30 H 0.36 9.30 5.52 -40.82 -0.23 9.07 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.39 7.35 -51.93 -0.38 1.01 16 34 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 35 H 0.08 0.85 7.82 -51.93 -0.41 0.44 16 36 H 0.07 0.59 7.82 -51.93 -0.41 0.18 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.30 6.84 -51.93 -0.36 -0.06 16 39 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.28 6.98 -51.93 -0.36 -0.08 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 44 H 0.09 1.04 7.74 -51.93 -0.40 0.64 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.49 5.48 -51.93 -0.28 0.20 16 47 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.05 0.56 7.32 -51.93 -0.38 0.18 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -36.51 378.00 -8.43 -44.95 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.57 Total: 4.25 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -0.41 Total: 2.37 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.07 Total: -56.59 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.50 Total: -19.19 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.71 Total: 18.52 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.51 -8.43 -44.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200380902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.098 kcal (2) G-P(sol) polarization free energy of solvation -36.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds