Wall clock time and date at job start Tue Mar 31 2020 05:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48500 * 109.46799 * 269.99862 * 3 2 1 5 5 H 1.48502 * 109.47375 * 29.99500 * 3 2 1 6 6 H 1.48495 * 109.47317 * 149.99842 * 3 2 1 7 7 C 1.38813 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99838 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00190 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00086 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46945 * 180.02562 * 10 9 7 12 12 H 1.08988 * 109.47303 * 305.00359 * 11 10 9 13 13 C 1.54288 * 109.53624 * 185.02094 * 11 10 9 14 14 N 1.45121 * 109.82815 * 172.11798 * 13 11 10 15 15 C 1.34785 * 118.75520 * 269.42358 * 14 13 11 16 16 O 1.21276 * 120.00074 * 5.08917 * 15 14 13 17 17 C 1.50699 * 119.99685 * 185.08610 * 15 14 13 18 18 H 1.09000 * 108.96409 * 23.98347 * 17 15 14 19 19 C 1.54203 * 108.97659 * 265.18049 * 17 15 14 20 20 C 1.50625 * 109.13251 * 161.88039 * 19 17 15 21 21 C 1.53914 * 112.41475 * 90.24215 * 20 19 17 22 22 O 1.43987 * 113.46819 * 317.99388 * 21 20 19 23 23 C 1.40321 * 116.57962 * 317.86081 * 22 21 20 24 24 C 1.46285 * 108.90754 * 142.74788 * 17 15 14 25 25 C 1.47510 * 122.48654 * 89.14372 * 14 13 11 26 26 C 1.53574 * 111.02457 * 318.63185 * 25 14 13 27 27 C 1.51533 * 109.58166 * 320.02094 * 26 25 14 28 28 O 1.38015 * 109.46772 * 65.00842 * 11 10 9 29 29 H 0.96994 * 120.00229 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99484 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47008 * 60.00940 * 10 9 7 32 32 H 1.09000 * 109.47146 * 300.00702 * 10 9 7 33 33 H 1.09002 * 109.22149 * 52.07002 * 13 11 10 34 34 H 1.08995 * 109.41310 * 292.28607 * 13 11 10 35 35 H 1.09000 * 109.53923 * 281.79254 * 19 17 15 36 36 H 1.08995 * 109.54090 * 41.96189 * 19 17 15 37 37 H 1.09006 * 108.88342 * 211.13342 * 20 19 17 38 38 H 1.08993 * 108.88614 * 329.59644 * 20 19 17 39 39 H 1.09008 * 108.69983 * 196.94579 * 21 20 19 40 40 H 1.08994 * 108.53756 * 78.93849 * 21 20 19 41 41 H 1.08993 * 109.59883 * 335.26930 * 23 22 21 42 42 H 1.09007 * 109.59901 * 214.80017 * 23 22 21 43 43 H 1.08998 * 108.93749 * 302.71152 * 24 17 15 44 44 H 1.09003 * 108.94105 * 61.40424 * 24 17 15 45 45 H 1.08995 * 109.16545 * 79.02924 * 25 14 13 46 46 H 1.08996 * 109.16733 * 198.28495 * 25 14 13 47 47 H 1.08993 * 109.45352 * 80.06027 * 26 25 14 48 48 H 1.08999 * 109.44637 * 199.99058 * 26 25 14 49 49 H 1.08999 * 109.58797 * 211.18053 * 27 26 25 50 50 H 1.08991 * 109.59452 * 331.47103 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.6165 -2.1910 0.0000 12 1 5.8659 -1.5451 -0.8417 13 6 6.3885 -3.5208 -0.1273 14 7 7.8024 -3.2530 -0.3148 15 6 8.2773 -3.1254 -1.5697 16 8 7.5137 -3.1422 -2.5117 17 6 9.7573 -2.9618 -1.8022 18 1 10.2977 -3.3833 -0.9547 19 6 10.0850 -1.4587 -1.9085 20 6 11.5625 -1.2592 -1.6940 21 6 12.3603 -1.3230 -3.0087 22 8 11.9285 -2.3758 -3.8909 23 6 11.6432 -3.6148 -3.2974 24 6 10.1301 -3.6907 -3.0145 25 6 8.7384 -3.1094 0.8163 26 6 8.1070 -2.2932 1.9537 27 6 7.3113 -1.1423 1.3718 28 8 5.9682 -1.5664 1.1794 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3619 -0.0004 31 1 3.8487 -3.0424 -0.8899 32 1 3.8492 -3.0422 0.8902 33 1 6.0074 -4.0764 -0.9841 34 1 6.2475 -4.1097 0.7790 35 1 9.8078 -1.0942 -2.8977 36 1 9.5289 -0.9097 -1.1487 37 1 11.7232 -0.2870 -1.2280 38 1 11.9294 -2.0352 -1.0223 39 1 13.4132 -1.4758 -2.7714 40 1 12.2543 -0.3689 -3.5249 41 1 12.1952 -3.7080 -2.3622 42 1 11.9292 -4.4194 -3.9750 43 1 9.8435 -4.7362 -2.9008 44 1 9.5914 -3.2668 -3.8620 45 1 9.0029 -4.0986 1.1897 46 1 9.6407 -2.6039 0.4721 47 1 7.4455 -2.9340 2.5364 48 1 8.8933 -1.9013 2.5989 49 1 7.3327 -0.2980 2.0608 50 1 7.7435 -0.8453 0.4163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200380902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:04 Heat of formation + Delta-G solvation = -131.491279 kcal Electronic energy + Delta-G solvation = -29912.637255 eV Core-core repulsion = 25939.510725 eV Total energy + Delta-G solvation = -3973.126529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.09474 -40.48281 -39.38668 -37.08159 -36.36491 -35.85200 -34.36185 -33.48976 -33.02907 -30.70830 -28.76285 -27.60529 -26.96588 -26.46989 -24.34714 -23.05076 -22.40223 -22.12530 -21.59289 -19.93626 -19.83633 -18.84894 -17.90923 -17.65097 -17.30085 -17.18698 -16.88566 -16.45583 -16.18761 -15.93619 -15.71524 -15.25522 -15.06332 -14.88548 -14.65223 -14.52730 -14.43007 -14.02370 -13.89005 -13.81619 -13.55015 -13.28980 -13.23291 -12.89173 -12.69006 -12.54008 -12.35237 -12.33402 -12.20023 -12.06507 -11.86565 -11.73405 -11.68194 -11.48133 -11.33954 -11.06705 -10.75271 -10.61850 -10.39255 -9.69759 -9.35814 -8.06792 -5.40204 1.33122 1.36371 1.44655 1.47938 1.86755 2.44750 2.64778 2.95045 3.24713 3.29966 3.43600 3.57487 3.77368 3.79777 3.91195 3.92223 3.99998 4.00910 4.08067 4.17275 4.23765 4.30565 4.34735 4.42801 4.44960 4.50442 4.55977 4.62366 4.65185 4.70121 4.75049 4.81418 4.83826 4.94594 4.99426 5.02922 5.08863 5.10489 5.11386 5.17770 5.26398 5.29935 5.50564 5.69235 6.16622 6.24139 6.50744 6.67037 7.01999 7.08257 7.77593 7.97879 9.14708 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017376 B = 0.003083 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.073771 B = 9081.147736 C = 9310.195968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.954 3.046 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.257 1.257 7 C -0.237 4.237 8 H 0.060 0.940 9 N -0.754 5.754 10 C 0.165 3.835 11 C 0.102 3.898 12 H 0.024 0.976 13 C 0.093 3.907 14 N -0.607 5.607 15 C 0.502 3.498 16 O -0.584 6.584 17 C -0.091 4.091 18 H 0.126 0.874 19 C -0.105 4.105 20 C -0.145 4.145 21 C 0.054 3.946 22 O -0.410 6.410 23 C 0.076 3.924 24 C -0.141 4.141 25 C 0.097 3.903 26 C -0.157 4.157 27 C 0.061 3.939 28 O -0.398 6.398 29 H 0.260 0.740 30 H 0.365 0.635 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.095 0.905 46 H 0.111 0.889 47 H 0.075 0.925 48 H 0.123 0.877 49 H 0.099 0.901 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.994 -6.972 2.770 36.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.253 4.253 3 Si 0.781 3.219 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.181 1.181 7 C -0.368 4.368 8 H 0.078 0.922 9 N -0.399 5.399 10 C 0.039 3.961 11 C 0.042 3.958 12 H 0.042 0.958 13 C -0.032 4.032 14 N -0.339 5.339 15 C 0.291 3.709 16 O -0.463 6.463 17 C -0.112 4.112 18 H 0.143 0.857 19 C -0.143 4.143 20 C -0.183 4.183 21 C -0.022 4.022 22 O -0.330 6.330 23 C -0.001 4.001 24 C -0.179 4.179 25 C -0.023 4.023 26 C -0.195 4.195 27 C -0.015 4.015 28 O -0.317 6.317 29 H 0.068 0.932 30 H 0.198 0.802 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.113 0.887 46 H 0.129 0.871 47 H 0.093 0.907 48 H 0.142 0.858 49 H 0.117 0.883 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 35.265 -7.054 2.269 36.035 hybrid contribution -0.642 0.957 -0.316 1.195 sum 34.624 -6.097 1.953 35.211 Atomic orbital electron populations 1.69871 1.06939 1.26786 1.59609 1.25474 0.96170 1.01166 1.02498 0.85409 0.78647 0.79796 0.78000 1.20689 1.21359 1.18145 1.19068 0.82420 0.93773 1.41512 0.92219 1.42586 1.02596 1.03868 1.90886 1.20731 0.88203 0.88183 0.99029 1.21790 0.93954 0.93580 0.86457 0.95763 1.21978 0.80935 0.96672 1.03620 1.48106 1.08383 1.70497 1.06949 1.21631 0.92297 0.74762 0.82205 1.90720 1.60857 1.51298 1.43404 1.20540 0.90193 0.98793 1.01687 0.85655 1.21245 0.98052 0.92749 1.02232 1.21920 0.92922 1.05187 0.98239 1.23156 0.97735 0.90336 0.90969 1.87474 1.87597 1.21087 1.36793 1.22350 0.92088 0.85948 0.99747 1.21040 0.99189 1.00550 0.97115 1.22405 0.91871 1.02439 0.85634 1.22439 1.01370 0.97435 0.98242 1.22468 0.81080 0.97669 1.00255 1.86352 1.30217 1.77277 1.37871 0.93161 0.80230 0.94370 0.94365 0.90658 0.87749 0.93124 0.91268 0.88429 0.89071 0.91008 0.89866 0.90116 0.88727 0.90939 0.93409 0.88680 0.87111 0.90662 0.85847 0.88289 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.49 13.97 21.65 0.30 -65.19 16 2 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 3 Si 0.95 48.59 27.73 68.60 1.90 50.49 16 4 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.26 -12.15 6.52 99.48 0.65 -11.50 16 7 C -0.24 -14.55 10.47 84.03 0.88 -13.67 16 8 H 0.06 3.94 8.06 -2.91 -0.02 3.92 16 9 N -0.75 -39.39 5.34 -343.45 -1.83 -41.22 16 10 C 0.17 7.07 5.92 86.38 0.51 7.58 16 11 C 0.10 3.55 2.67 31.03 0.08 3.64 16 12 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 13 C 0.09 2.51 4.78 87.07 0.42 2.93 16 14 N -0.61 -12.73 2.21 -819.01 -1.81 -14.53 16 15 C 0.50 12.34 6.43 87.66 0.56 12.90 16 16 O -0.58 -20.98 15.70 -3.02 -0.05 -21.03 16 17 C -0.09 -1.40 1.29 -13.20 -0.02 -1.42 16 18 H 0.13 0.95 5.65 -2.39 -0.01 0.94 16 19 C -0.10 -1.53 4.61 30.23 0.14 -1.39 16 20 C -0.15 -1.06 5.33 30.13 0.16 -0.90 16 21 C 0.05 0.55 6.67 72.29 0.48 1.03 16 22 O -0.41 -6.80 10.17 -143.44 -1.46 -8.26 16 23 C 0.08 0.91 6.38 72.36 0.46 1.38 16 24 C -0.14 -2.44 4.37 28.91 0.13 -2.31 16 25 C 0.10 1.05 5.65 86.38 0.49 1.53 16 26 C -0.16 -1.97 5.78 30.31 0.18 -1.79 16 27 C 0.06 1.30 6.37 71.50 0.46 1.76 16 28 O -0.40 -12.93 9.38 -117.87 -1.11 -14.03 16 29 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 30 H 0.36 18.65 5.52 -92.71 -0.51 18.14 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 2.32 7.35 -2.39 -0.02 2.30 16 34 H 0.10 2.40 8.11 -2.39 -0.02 2.38 16 35 H 0.05 1.06 7.82 -2.39 -0.02 1.04 16 36 H 0.07 1.01 7.82 -2.39 -0.02 0.99 16 37 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.09 0.26 6.84 -2.39 -0.02 0.24 16 39 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.50 6.98 -2.39 -0.02 0.49 16 42 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 44 H 0.05 1.21 7.74 -2.39 -0.02 1.19 16 45 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.11 0.62 5.48 -2.39 -0.01 0.61 16 47 H 0.07 1.15 8.01 -2.39 -0.02 1.13 16 48 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.04 0.95 7.32 -2.39 -0.02 0.94 16 Total: -1.00 -84.92 378.00 1.70 -83.22 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.35 Total: 22.65 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.39 Total: 7.90 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -3.34 Total: -120.94 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -2.61 Total: -43.32 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.90 Total: 50.49 kcal Total: -84.92 1.70 -83.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200380902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.270 kcal (2) G-P(sol) polarization free energy of solvation -84.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds