Wall clock time and date at job start Tue Mar 31 2020 05:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00156 * 2 1 4 4 C 1.52996 * 109.47429 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47179 * 67.93592 * 4 3 2 6 6 C 1.46903 * 110.99840 * 158.06777 * 5 4 3 7 7 C 1.50702 * 109.46778 * 287.83528 * 6 5 4 8 8 H 1.07994 * 120.00410 * 3.05064 * 7 6 5 9 9 C 1.37879 * 119.99828 * 183.04644 * 7 6 5 10 10 N 1.31516 * 120.00248 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00002 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47275 * 59.99786 * 11 9 7 13 13 H 1.48495 * 109.47271 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47325 * 300.00216 * 11 9 7 15 15 C 1.46901 * 110.99938 * 282.01858 * 5 4 3 16 16 C 1.52997 * 109.47088 * 165.73448 * 15 5 4 17 17 C 1.50696 * 109.47195 * 180.02562 * 16 15 5 18 18 C 1.35349 * 126.75329 * 125.29341 * 17 16 15 19 19 N 1.35316 * 106.17717 * 180.12410 * 18 17 16 20 20 C 1.46498 * 125.87129 * 179.90287 * 19 18 17 21 21 C 1.50698 * 109.46901 * 124.71470 * 20 19 18 22 22 O 1.20825 * 120.00545 * 0.02562 * 21 20 19 23 23 O 1.34234 * 120.00020 * 180.02562 * 21 20 19 24 24 C 1.45195 * 117.00103 * 180.02562 * 23 21 20 25 25 N 1.28723 * 108.25981 * 359.64260 * 19 18 17 26 26 N 1.28635 * 110.17783 * 0.22540 * 25 19 18 27 27 H 1.09001 * 109.47580 * 300.00005 * 1 2 3 28 28 H 1.08999 * 109.46967 * 60.00243 * 1 2 3 29 29 H 1.09000 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47074 * 59.99983 * 3 2 1 31 31 H 1.09001 * 109.47080 * 300.00277 * 3 2 1 32 32 H 1.09004 * 109.46571 * 307.93407 * 4 3 2 33 33 H 1.09007 * 109.47300 * 187.93880 * 4 3 2 34 34 H 1.08997 * 109.47490 * 47.83820 * 6 5 4 35 35 H 1.08997 * 109.47283 * 167.84354 * 6 5 4 36 36 H 0.96994 * 120.00262 * 180.02562 * 10 9 7 37 37 H 1.08996 * 109.47253 * 45.73172 * 15 5 4 38 38 H 1.09002 * 109.46981 * 285.72968 * 15 5 4 39 39 H 1.08996 * 109.47299 * 59.99752 * 16 15 5 40 40 H 1.09002 * 109.46818 * 299.99621 * 16 15 5 41 41 H 1.07999 * 126.91473 * 0.02562 * 18 17 16 42 42 H 1.08996 * 109.47026 * 4.71710 * 20 19 18 43 43 H 1.08996 * 109.47374 * 244.71856 * 20 19 18 44 44 H 1.08991 * 109.47578 * 299.99940 * 24 23 21 45 45 H 1.09000 * 109.47130 * 60.00075 * 24 23 21 46 46 H 1.09002 * 109.46798 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9820 0.6276 -1.2845 6 6 5.3878 0.9653 -1.5443 7 6 5.4983 2.4298 -1.8824 8 1 4.6206 3.0583 -1.8541 9 6 6.7202 2.9673 -2.2276 10 7 7.7893 2.2021 -2.2615 11 14 6.8574 4.7827 -2.6460 12 1 6.4255 5.5936 -1.4792 13 1 8.2671 5.1085 -2.9800 14 1 5.9886 5.0894 -3.8106 15 6 3.7728 -0.8258 -1.3290 16 6 3.9070 -1.3164 -2.7719 17 6 3.6918 -2.8072 -2.8177 18 6 2.7993 -3.4734 -3.5867 19 7 2.9572 -4.7857 -3.2967 20 6 2.2007 -5.8924 -3.8874 21 6 3.1569 -6.8899 -4.4887 22 8 4.3481 -6.6965 -4.4296 23 8 2.6853 -7.9934 -5.0902 24 6 3.6640 -8.9104 -5.6465 25 7 3.8901 -4.8948 -2.4165 26 7 4.3489 -3.7328 -2.1098 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8480 0.5260 0.8097 33 1 3.9781 2.1706 0.1413 34 1 5.9830 0.7514 -0.6566 35 1 5.7558 0.3708 -2.3805 36 1 8.6489 2.5803 -2.5040 37 1 2.7759 -1.0609 -0.9564 38 1 4.5191 -1.3194 -0.7065 39 1 4.9039 -1.0812 -3.1444 40 1 3.1607 -0.8227 -3.3944 41 1 2.1004 -3.0440 -4.2893 42 1 1.5408 -5.5074 -4.6648 43 1 1.6060 -6.3794 -3.1146 44 1 4.2561 -8.3951 -6.4027 45 1 4.3200 -9.2672 -4.8525 46 1 3.1507 -9.7575 -6.1014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363777731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:23 Heat of formation + Delta-G solvation = -42.922561 kcal Electronic energy + Delta-G solvation = -27682.327889 eV Core-core repulsion = 23609.501644 eV Total energy + Delta-G solvation = -4072.826245 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.29198 -41.58377 -39.41912 -37.88321 -37.71405 -35.91542 -34.72873 -33.77604 -31.19985 -30.70274 -30.00188 -28.17156 -27.88534 -26.85989 -24.81240 -23.99052 -23.59870 -22.52876 -21.75935 -21.08345 -19.08272 -18.63102 -18.50318 -17.78407 -17.47935 -17.33596 -17.00534 -16.73335 -16.54009 -16.23562 -15.86908 -15.57184 -15.10930 -15.04597 -14.87972 -14.54844 -14.29611 -14.06271 -13.84266 -13.55575 -13.19189 -13.09933 -12.83237 -12.75820 -12.70802 -12.62918 -12.41849 -12.24918 -12.18472 -11.98330 -11.96873 -11.93021 -11.57464 -11.45709 -11.16656 -11.05424 -10.55338 -10.38768 -10.02956 -8.98093 -8.13303 -6.24245 0.48348 0.92732 1.10975 1.44354 1.48288 1.53865 1.56046 1.77854 2.44887 3.00641 3.16443 3.21258 3.42353 3.57934 3.71975 4.02484 4.04869 4.18813 4.25210 4.26949 4.29196 4.37109 4.40915 4.50534 4.58159 4.65138 4.67203 4.70764 4.72122 4.86777 4.91447 4.99045 5.01585 5.13781 5.16972 5.20713 5.33852 5.36708 5.43832 5.57161 5.72179 6.13410 6.36004 6.49111 6.49283 6.68458 6.92625 7.45339 7.51484 8.97611 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012377 B = 0.002728 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.698867 B =10261.397313 C =12056.986423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.081 3.919 4 C 0.059 3.941 5 N -0.528 5.528 6 C 0.205 3.795 7 C -0.516 4.516 8 H 0.070 0.930 9 C -0.003 4.003 10 N -0.939 5.939 11 Si 0.972 3.028 12 H -0.266 1.266 13 H -0.289 1.289 14 H -0.264 1.264 15 C 0.069 3.931 16 C -0.019 4.019 17 C -0.030 4.030 18 C -0.015 4.015 19 N -0.290 5.290 20 C 0.126 3.874 21 C 0.447 3.553 22 O -0.530 6.530 23 O -0.347 6.347 24 C 0.030 3.970 25 N -0.102 5.102 26 N -0.309 5.309 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.018 0.982 33 H 0.081 0.919 34 H -0.052 1.052 35 H 0.009 0.991 36 H 0.262 0.738 37 H 0.104 0.896 38 H -0.010 1.010 39 H 0.047 0.953 40 H 0.109 0.891 41 H 0.249 0.751 42 H 0.205 0.795 43 H 0.176 0.824 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.516 -17.171 -6.394 29.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C 0.005 3.995 4 C -0.069 4.069 5 N -0.252 5.252 6 C 0.078 3.922 7 C -0.554 4.554 8 H 0.088 0.912 9 C -0.200 4.200 10 N -0.580 5.580 11 Si 0.796 3.204 12 H -0.190 1.190 13 H -0.215 1.215 14 H -0.189 1.189 15 C -0.059 4.059 16 C -0.058 4.058 17 C -0.168 4.168 18 C -0.164 4.164 19 N -0.085 5.085 20 C 0.005 3.995 21 C 0.289 3.711 22 O -0.418 6.418 23 O -0.262 6.262 24 C -0.063 4.063 25 N -0.081 5.081 26 N -0.176 5.176 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.100 0.900 34 H -0.034 1.034 35 H 0.027 0.973 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.009 0.991 39 H 0.065 0.935 40 H 0.127 0.873 41 H 0.265 0.735 42 H 0.222 0.778 43 H 0.193 0.807 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.330 -18.125 -5.937 28.614 hybrid contribution 1.197 1.003 -0.080 1.564 sum -20.133 -17.122 -6.017 27.105 Atomic orbital electron populations 1.22868 0.80014 1.03319 1.00686 1.87843 1.21141 1.28546 1.95404 1.22500 0.91658 0.84505 1.00850 1.22094 0.94913 1.00022 0.89905 1.62103 1.21251 1.10692 1.31191 1.19450 0.83589 0.96136 0.92988 1.21448 0.94218 0.94490 1.45227 0.91208 1.25989 0.95311 1.03162 0.95585 1.70128 1.00006 1.37905 1.49980 0.85406 0.76847 0.78980 0.79180 1.19038 1.21458 1.18896 1.22108 1.01154 0.87375 0.95256 1.19753 1.02295 0.85731 0.98042 1.22193 0.97997 0.97406 0.99233 1.24005 1.04996 0.82072 1.05330 1.47131 1.25744 1.07829 1.27834 1.21955 0.90392 0.83756 1.03396 1.23954 0.88843 0.82512 0.75763 1.90846 1.19537 1.76105 1.55340 1.86449 1.41366 1.31428 1.66977 1.23583 0.92375 0.91977 0.98338 1.78286 1.03356 1.18687 1.07791 1.75072 1.23393 0.95784 1.23384 0.93377 0.93254 0.88953 0.91448 0.92195 0.96346 0.90022 1.03447 0.97263 0.92921 0.87780 0.99121 0.93491 0.87275 0.73476 0.77778 0.80721 0.92274 0.92528 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.41 -12.13 7.92 -148.98 -1.18 -13.31 16 3 C 0.08 2.49 6.25 71.98 0.45 2.94 16 4 C 0.06 2.37 5.35 86.30 0.46 2.84 16 5 N -0.53 -23.97 4.33 -900.80 -3.90 -27.87 16 6 C 0.20 11.51 4.57 85.56 0.39 11.90 16 7 C -0.52 -29.60 8.38 25.60 0.21 -29.39 16 8 H 0.07 3.81 7.65 -2.91 -0.02 3.79 16 9 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 10 N -0.94 -59.01 13.29 21.45 0.28 -58.72 16 11 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 13 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 14 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 15 C 0.07 2.88 4.74 86.30 0.41 3.29 16 16 C -0.02 -0.70 5.83 29.85 0.17 -0.53 16 17 C -0.03 -1.02 6.50 41.59 0.27 -0.75 16 18 C -0.01 -0.32 11.49 83.49 0.96 0.64 16 19 N -0.29 -6.53 3.20 -351.48 -1.12 -7.65 16 20 C 0.13 1.17 7.05 85.63 0.60 1.77 16 21 C 0.45 7.72 7.97 71.24 0.57 8.28 16 22 O -0.53 -15.52 15.43 21.97 0.34 -15.18 16 23 O -0.35 -4.31 10.57 -51.46 -0.54 -4.85 16 24 C 0.03 0.31 10.56 113.37 1.20 1.51 16 25 N -0.10 -3.54 12.13 37.02 0.45 -3.09 16 26 N -0.31 -12.53 12.40 -48.60 -0.60 -13.13 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.02 0.76 7.97 -2.39 -0.02 0.75 16 33 H 0.08 3.48 7.01 -2.38 -0.02 3.46 16 34 H -0.05 -3.28 8.05 -2.39 -0.02 -3.30 16 35 H 0.01 0.57 6.19 -2.39 -0.01 0.55 16 36 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.10 3.98 5.15 -2.39 -0.01 3.97 16 38 H -0.01 -0.47 8.07 -2.39 -0.02 -0.48 16 39 H 0.05 2.10 6.46 -2.39 -0.02 2.09 16 40 H 0.11 3.41 8.12 -2.39 -0.02 3.39 16 41 H 0.25 2.28 8.06 -2.91 -0.02 2.25 16 42 H 0.21 -0.45 8.07 -2.39 -0.02 -0.47 16 43 H 0.18 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 45 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 46 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -91.22 387.63 4.13 -87.09 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 0.97 Total: 5.29 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 7.41 Total: 4.56 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -4.90 Total: -110.47 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.38 Total: -33.34 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -91.22 4.13 -87.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363777731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.172 kcal (2) G-P(sol) polarization free energy of solvation -91.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds