Wall clock time and date at job start Tue Mar 31 2020 04:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 N 1.46903 * 109.47169 * 175.00308 * 4 2 1 6 6 C 1.46896 * 110.99933 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47212 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99800 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00500 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00476 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00053 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00134 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00190 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99770 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47247 * 90.00406 * 14 12 10 16 16 H 1.48506 * 109.47201 * 210.00388 * 14 12 10 17 17 H 1.48499 * 109.47520 * 330.00198 * 14 12 10 18 18 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 19 19 C 1.34777 * 119.99665 * 85.27876 * 18 2 1 20 20 O 1.21283 * 119.99990 * 359.71991 * 19 18 2 21 21 C 1.50698 * 119.99538 * 179.72653 * 19 18 2 22 22 H 1.08999 * 110.21630 * 320.46644 * 21 19 18 23 23 C 1.54475 * 110.25011 * 82.49696 * 21 19 18 24 24 C 1.54623 * 101.76942 * 144.41279 * 23 21 19 25 25 C 1.51283 * 104.19432 * 335.20152 * 24 23 21 26 26 O 1.21288 * 124.94236 * 196.22676 * 25 24 23 27 27 N 1.34416 * 110.11819 * 16.25437 * 25 24 23 28 28 C 1.46502 * 124.35281 * 180.38653 * 27 25 24 29 29 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 30 30 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 31 31 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46944 * 295.00111 * 4 2 1 33 33 H 1.08997 * 109.47436 * 55.00260 * 4 2 1 34 34 H 1.00902 * 110.99737 * 56.04671 * 5 4 2 35 35 H 1.09003 * 109.47456 * 299.99559 * 6 5 4 36 36 H 1.09003 * 109.47445 * 60.00133 * 6 5 4 37 37 H 0.97004 * 119.99845 * 0.02562 * 9 7 6 38 38 H 0.97002 * 119.99702 * 179.97438 * 13 12 10 39 39 H 0.97001 * 119.99790 * 264.99588 * 18 2 1 40 40 H 1.09002 * 110.96993 * 262.53460 * 23 21 19 41 41 H 1.09000 * 110.97097 * 26.29336 * 23 21 19 42 42 H 1.09001 * 110.49016 * 216.52230 * 24 23 21 43 43 H 1.09007 * 110.48587 * 93.88012 * 24 23 21 44 44 H 1.09001 * 109.46951 * 270.01700 * 28 27 25 45 45 H 1.08996 * 109.46851 * 30.02050 * 28 27 25 46 46 H 1.09004 * 109.46507 * 150.02141 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1906 6 6 4.0302 -1.5157 2.3763 7 6 5.5315 -1.6053 2.2805 8 8 6.1066 -1.1403 1.3191 9 7 6.2352 -2.2011 3.2633 10 6 7.6010 -2.2830 3.1758 11 1 8.1130 -1.8697 2.3194 12 6 8.3265 -2.8969 4.1895 13 7 7.7036 -3.3993 5.2318 14 14 10.1874 -3.0078 4.0705 15 1 10.7961 -1.8086 4.7004 16 1 10.6566 -4.2285 4.7742 17 1 10.5891 -3.0745 2.6424 18 7 2.0184 -0.6906 -1.1961 19 6 2.1524 -0.0169 -2.3557 20 8 1.8639 1.1598 -2.4102 21 6 2.6607 -0.7259 -3.5845 22 1 3.4614 -1.4155 -3.3174 23 6 1.5083 -1.4849 -4.2789 24 6 1.8767 -1.3205 -5.7716 25 6 2.7176 -0.0635 -5.8099 26 8 2.9751 0.5698 -6.8117 27 7 3.1385 0.2490 -4.5722 28 6 3.9680 1.4130 -4.2504 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7515 -0.1582 2.1370 33 1 1.6054 -1.7197 1.2953 34 1 3.9279 0.0827 1.0825 35 1 3.7556 -0.9586 3.2721 36 1 3.6094 -2.5198 2.4297 37 1 5.7754 -2.5727 4.0324 38 1 8.2102 -3.8282 5.9392 39 1 2.2491 -1.6318 -1.1525 40 1 1.5047 -2.5363 -3.9915 41 1 0.5472 -1.0192 -4.0608 42 1 0.9775 -1.1964 -6.3751 43 1 2.4548 -2.1771 -6.1184 44 1 5.0207 1.1384 -4.3166 45 1 3.7567 2.2160 -4.9564 46 1 3.7435 1.7504 -3.2385 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669644658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:12 Heat of formation + Delta-G solvation = -101.742334 kcal Electronic energy + Delta-G solvation = -27793.345420 eV Core-core repulsion = 23717.968558 eV Total energy + Delta-G solvation = -4075.376862 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.13059 -39.44270 -38.37031 -36.98754 -36.16063 -34.41535 -33.76354 -33.00341 -31.42404 -31.20129 -28.31521 -27.68573 -26.77759 -25.10590 -23.49812 -23.02475 -21.60801 -20.67481 -19.64304 -19.29313 -17.98851 -17.88779 -17.16355 -16.55855 -16.20371 -15.94200 -15.46551 -15.24012 -14.90569 -14.63567 -14.52887 -14.13715 -14.03099 -13.91579 -13.74352 -13.54174 -13.28083 -13.03218 -12.77578 -12.67804 -12.62034 -12.21390 -12.07868 -12.04823 -11.83331 -11.61259 -11.53878 -11.49813 -11.08939 -11.05319 -10.43721 -10.27315 -10.20801 -9.97245 -9.56647 -9.22903 -8.85451 -8.56402 -8.19850 -8.02469 -6.47534 -3.88548 2.29943 2.36663 2.68996 3.09608 3.13785 3.23077 3.28705 3.83687 3.95763 3.98322 4.05201 4.21480 4.36850 4.60571 4.65945 4.73838 4.94646 5.01825 5.05196 5.15084 5.20653 5.21604 5.27422 5.35987 5.44266 5.46401 5.48635 5.49928 5.53613 5.69645 5.77854 5.80029 5.87035 5.94355 6.17795 6.20994 6.34016 6.87251 7.04133 7.36246 7.48735 7.49808 7.93202 8.00069 8.05801 8.54636 9.12044 9.47815 9.98817 10.70077 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.002494 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.544285 B =11226.260870 C =12572.789674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.086 0.914 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.269 1.269 18 N -0.700 5.700 19 C 0.511 3.489 20 O -0.535 6.535 21 C 0.111 3.889 22 H 0.109 0.891 23 C -0.119 4.119 24 C -0.153 4.153 25 C 0.518 3.482 26 O -0.533 6.533 27 N -0.598 5.598 28 C 0.093 3.907 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.351 0.649 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.407 0.593 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.036 0.779 -11.004 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.083 4.083 5 N -0.300 5.300 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.468 6.468 9 N -0.199 5.199 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.352 5.352 19 C 0.295 3.705 20 O -0.411 6.411 21 C 0.003 3.997 22 H 0.127 0.873 23 C -0.157 4.157 24 C -0.193 4.193 25 C 0.306 3.694 26 O -0.410 6.410 27 N -0.331 5.331 28 C -0.049 4.049 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.170 0.830 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.243 0.757 40 H 0.120 0.880 41 H 0.105 0.895 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.573 1.691 -12.398 20.766 hybrid contribution 0.727 -0.150 1.543 1.713 sum -15.846 1.542 -10.855 19.269 Atomic orbital electron populations 1.22133 0.94837 1.02311 1.02682 1.20969 0.93669 0.97484 0.83840 0.89545 1.22321 0.89594 1.00759 0.95617 1.60073 1.02982 1.26860 1.40054 1.21679 0.95363 0.99839 0.91336 1.19787 0.87979 0.84700 0.85079 1.90531 1.71097 1.51906 1.33234 1.41866 1.07434 1.50847 1.19778 1.19696 0.81488 1.35242 1.06535 0.87925 1.25266 1.00735 0.96691 0.95200 1.69609 1.36751 1.38550 1.09360 0.85860 0.82130 0.77679 0.78647 1.20399 1.20885 1.19367 1.45807 1.66171 1.14477 1.08711 1.20528 0.78007 0.87446 0.84499 1.90704 1.49877 1.15695 1.84855 1.21675 0.98410 0.91091 0.88541 0.87314 1.22592 0.97530 1.01668 0.93951 1.22357 1.01672 0.97669 0.97622 1.20833 0.79759 0.86272 0.82583 1.90729 1.59528 1.56659 1.34035 1.47828 1.51486 1.26617 1.07198 1.21703 0.93269 0.86661 1.03239 0.91535 0.91935 0.92186 0.93806 0.90338 0.82990 0.93814 0.89561 0.77473 0.91826 0.75729 0.87985 0.89469 0.87666 0.87285 0.92571 0.90770 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.49 37.16 0.35 -0.87 16 2 C 0.15 1.35 2.82 -67.93 -0.19 1.16 16 3 H 0.09 0.98 7.57 -51.93 -0.39 0.59 16 4 C 0.05 0.45 5.24 -3.82 -0.02 0.43 16 5 N -0.67 -9.11 5.85 -115.05 -0.67 -9.79 16 6 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 7 C 0.44 9.76 7.82 -10.99 -0.09 9.67 16 8 O -0.58 -15.08 15.78 5.54 0.09 -15.00 16 9 N -0.56 -13.68 5.29 -10.96 -0.06 -13.74 16 10 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 11 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -23.94 13.05 55.50 0.72 -23.21 16 14 Si 0.93 20.62 29.55 -169.99 -5.02 15.59 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 18 N -0.70 -6.35 4.80 -53.81 -0.26 -6.61 16 19 C 0.51 5.49 6.50 -10.99 -0.07 5.41 16 20 O -0.53 -7.59 14.25 5.55 0.08 -7.51 16 21 C 0.11 0.99 3.71 -68.16 -0.25 0.74 16 22 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 23 C -0.12 -0.70 6.67 -25.10 -0.17 -0.87 16 24 C -0.15 -1.10 6.86 -26.74 -0.18 -1.28 16 25 C 0.52 6.31 8.02 -10.86 -0.09 6.23 16 26 O -0.53 -8.61 17.60 5.55 0.10 -8.51 16 27 N -0.60 -6.97 3.00 -174.01 -0.52 -7.49 16 28 C 0.09 1.12 10.43 59.85 0.62 1.75 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.35 5.35 8.43 -39.29 -0.33 5.02 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.41 3.15 8.60 -40.82 -0.35 2.79 16 40 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.54 7.91 -51.93 -0.41 0.13 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.93 7.93 -51.93 -0.41 0.51 16 46 H 0.09 1.11 5.98 -51.93 -0.31 0.80 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -35.01 386.88 -7.19 -42.19 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -7.11 Total: 12.90 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: -0.35 Total: 15.33 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.79 Total: -60.83 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: 0.26 Total: -31.02 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.01 -7.19 -42.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669644658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.552 kcal (2) G-P(sol) polarization free energy of solvation -35.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds