Wall clock time and date at job start Tue Mar 31 2020 04:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 N 1.46903 * 109.47169 * 175.00308 * 4 2 1 6 6 C 1.46896 * 110.99933 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47212 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99800 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00500 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00476 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00053 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00134 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00190 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99770 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47247 * 90.00406 * 14 12 10 16 16 H 1.48506 * 109.47201 * 210.00388 * 14 12 10 17 17 H 1.48499 * 109.47520 * 330.00198 * 14 12 10 18 18 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 19 19 C 1.34777 * 119.99665 * 85.27876 * 18 2 1 20 20 O 1.21283 * 119.99990 * 359.71991 * 19 18 2 21 21 C 1.50698 * 119.99538 * 179.72653 * 19 18 2 22 22 H 1.08999 * 110.21630 * 320.46644 * 21 19 18 23 23 C 1.54475 * 110.25011 * 82.49696 * 21 19 18 24 24 C 1.54623 * 101.76942 * 144.41279 * 23 21 19 25 25 C 1.51283 * 104.19432 * 335.20152 * 24 23 21 26 26 O 1.21288 * 124.94236 * 196.22676 * 25 24 23 27 27 N 1.34416 * 110.11819 * 16.25437 * 25 24 23 28 28 C 1.46502 * 124.35281 * 180.38653 * 27 25 24 29 29 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 30 30 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 31 31 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46944 * 295.00111 * 4 2 1 33 33 H 1.08997 * 109.47436 * 55.00260 * 4 2 1 34 34 H 1.00902 * 110.99737 * 56.04671 * 5 4 2 35 35 H 1.09003 * 109.47456 * 299.99559 * 6 5 4 36 36 H 1.09003 * 109.47445 * 60.00133 * 6 5 4 37 37 H 0.97004 * 119.99845 * 0.02562 * 9 7 6 38 38 H 0.97002 * 119.99702 * 179.97438 * 13 12 10 39 39 H 0.97001 * 119.99790 * 264.99588 * 18 2 1 40 40 H 1.09002 * 110.96993 * 262.53460 * 23 21 19 41 41 H 1.09000 * 110.97097 * 26.29336 * 23 21 19 42 42 H 1.09001 * 110.49016 * 216.52230 * 24 23 21 43 43 H 1.09007 * 110.48587 * 93.88012 * 24 23 21 44 44 H 1.09001 * 109.46951 * 270.01700 * 28 27 25 45 45 H 1.08996 * 109.46851 * 30.02050 * 28 27 25 46 46 H 1.09004 * 109.46507 * 150.02141 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1906 6 6 4.0302 -1.5157 2.3763 7 6 5.5315 -1.6053 2.2805 8 8 6.1066 -1.1403 1.3191 9 7 6.2352 -2.2011 3.2633 10 6 7.6010 -2.2830 3.1758 11 1 8.1130 -1.8697 2.3194 12 6 8.3265 -2.8969 4.1895 13 7 7.7036 -3.3993 5.2318 14 14 10.1874 -3.0078 4.0705 15 1 10.7961 -1.8086 4.7004 16 1 10.6566 -4.2285 4.7742 17 1 10.5891 -3.0745 2.6424 18 7 2.0184 -0.6906 -1.1961 19 6 2.1524 -0.0169 -2.3557 20 8 1.8639 1.1598 -2.4102 21 6 2.6607 -0.7259 -3.5845 22 1 3.4614 -1.4155 -3.3174 23 6 1.5083 -1.4849 -4.2789 24 6 1.8767 -1.3205 -5.7716 25 6 2.7176 -0.0635 -5.8099 26 8 2.9751 0.5698 -6.8117 27 7 3.1385 0.2490 -4.5722 28 6 3.9680 1.4130 -4.2504 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7515 -0.1582 2.1370 33 1 1.6054 -1.7197 1.2953 34 1 3.9279 0.0827 1.0825 35 1 3.7556 -0.9586 3.2721 36 1 3.6094 -2.5198 2.4297 37 1 5.7754 -2.5727 4.0324 38 1 8.2102 -3.8282 5.9392 39 1 2.2491 -1.6318 -1.1525 40 1 1.5047 -2.5363 -3.9915 41 1 0.5472 -1.0192 -4.0608 42 1 0.9775 -1.1964 -6.3751 43 1 2.4548 -2.1771 -6.1184 44 1 5.0207 1.1384 -4.3166 45 1 3.7567 2.2160 -4.9564 46 1 3.7435 1.7504 -3.2385 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669644658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:11 Heat of formation + Delta-G solvation = -130.789233 kcal Electronic energy + Delta-G solvation = -27794.604988 eV Core-core repulsion = 23717.968558 eV Total energy + Delta-G solvation = -4076.636430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.95842 -40.37910 -40.04189 -37.97909 -37.12644 -36.01281 -35.13215 -33.78532 -33.23926 -32.15763 -29.10295 -28.89034 -27.66911 -26.67808 -24.66152 -23.77318 -22.38405 -21.51290 -21.01434 -20.48264 -19.88564 -18.71316 -18.12294 -17.67083 -17.29349 -17.03537 -16.65328 -16.37147 -16.16684 -15.92835 -15.87163 -15.26934 -15.08104 -14.86526 -14.78644 -14.68139 -14.38328 -14.01873 -13.78948 -13.56850 -13.48918 -13.33782 -13.06939 -13.05658 -12.96563 -12.81203 -12.76380 -12.61476 -12.40586 -12.12244 -12.04830 -11.81297 -11.49441 -11.10314 -10.90175 -10.33019 -10.03831 -9.99756 -9.76368 -9.32796 -8.46091 -5.94154 1.38089 1.42096 1.42542 1.52249 1.54453 1.88604 2.08460 2.28874 2.31349 2.92070 3.22028 3.27873 3.42957 3.55016 3.74763 3.87647 4.01819 4.11595 4.20772 4.28492 4.35847 4.38754 4.42204 4.55774 4.59576 4.63436 4.69355 4.75169 4.81289 4.81660 4.84123 4.97157 5.04349 5.09114 5.31532 5.32338 5.42043 5.57440 5.88882 6.01164 6.10783 6.33182 6.60724 6.61900 7.02391 7.14545 7.27309 7.59129 8.14570 8.71202 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.002494 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.544285 B =11226.260870 C =12572.789674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.060 0.940 4 C 0.054 3.946 5 N -0.676 5.676 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.624 6.624 9 N -0.574 5.574 10 C -0.332 4.332 11 H 0.077 0.923 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.989 3.011 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.273 1.273 18 N -0.690 5.690 19 C 0.508 3.492 20 O -0.576 6.576 21 C 0.106 3.894 22 H 0.126 0.874 23 C -0.105 4.105 24 C -0.142 4.142 25 C 0.502 3.498 26 O -0.585 6.585 27 N -0.606 5.606 28 C 0.094 3.906 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.338 0.662 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.417 0.583 40 H 0.143 0.857 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.134 0.866 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.552 -1.478 -10.173 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.078 0.922 4 C -0.075 4.075 5 N -0.308 5.308 6 C -0.066 4.066 7 C 0.225 3.775 8 O -0.510 6.510 9 N -0.212 5.212 10 C -0.461 4.461 11 H 0.095 0.905 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.813 3.187 15 H -0.199 1.199 16 H -0.196 1.196 17 H -0.198 1.198 18 N -0.341 5.341 19 C 0.294 3.706 20 O -0.456 6.456 21 C -0.001 4.001 22 H 0.143 0.857 23 C -0.143 4.143 24 C -0.181 4.181 25 C 0.292 3.708 26 O -0.466 6.466 27 N -0.338 5.338 28 C -0.048 4.048 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.156 0.844 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.254 0.746 40 H 0.161 0.839 41 H 0.104 0.896 42 H 0.136 0.864 43 H 0.152 0.848 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.130 -0.618 -11.511 21.484 hybrid contribution 1.166 0.607 1.298 1.847 sum -16.964 -0.012 -10.213 19.801 Atomic orbital electron populations 1.22043 0.93054 1.03484 1.02416 1.20944 0.94900 0.96131 0.83838 0.92198 1.22394 0.86789 1.02317 0.96042 1.60087 1.05354 1.26106 1.39230 1.21543 0.90146 1.01937 0.92993 1.20975 0.90757 0.82311 0.83464 1.90505 1.72884 1.52995 1.34644 1.41939 1.06766 1.51822 1.20657 1.19625 0.83213 1.36780 1.06521 0.90480 1.25977 1.04630 0.95933 0.94628 1.69661 1.38158 1.38627 1.09649 0.84985 0.77250 0.78122 0.78350 1.19881 1.19551 1.19804 1.45761 1.65358 1.14808 1.08195 1.20862 0.77419 0.86989 0.85338 1.90693 1.51839 1.17545 1.85533 1.21962 1.00114 0.90553 0.87460 0.85672 1.22696 0.95906 1.03454 0.92260 1.22417 1.01397 0.95431 0.98894 1.21824 0.79650 0.87451 0.81832 1.90689 1.61524 1.58681 1.35662 1.48055 1.51034 1.26607 1.08120 1.21581 0.93855 0.87202 1.02190 0.90478 0.93574 0.90201 0.92454 0.87994 0.84389 0.91750 0.86958 0.76939 0.91341 0.74575 0.83903 0.89573 0.86380 0.84822 0.92078 0.91954 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.49 71.98 0.68 -1.24 16 2 C 0.15 2.47 2.82 44.99 0.13 2.59 16 3 H 0.06 1.35 7.57 -2.39 -0.02 1.34 16 4 C 0.05 0.86 5.24 86.30 0.45 1.31 16 5 N -0.68 -17.12 5.85 -517.92 -3.03 -20.15 16 6 C 0.07 1.91 6.17 85.56 0.53 2.44 16 7 C 0.44 19.25 7.82 87.66 0.69 19.94 16 8 O -0.62 -32.68 15.78 -3.08 -0.05 -32.73 16 9 N -0.57 -27.95 5.29 -306.99 -1.62 -29.57 16 10 C -0.33 -18.26 9.68 84.04 0.81 -17.45 16 11 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 12 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 13 N -0.92 -48.25 13.05 21.66 0.28 -47.96 16 14 Si 0.99 42.01 29.55 68.60 2.03 44.04 16 15 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 16 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 18 N -0.69 -11.25 4.80 -442.54 -2.12 -13.38 16 19 C 0.51 10.55 6.50 87.66 0.57 11.12 16 20 O -0.58 -16.77 14.25 -3.04 -0.04 -16.82 16 21 C 0.11 1.73 3.71 44.69 0.17 1.90 16 22 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 23 C -0.11 -0.91 6.67 31.65 0.21 -0.70 16 24 C -0.14 -1.69 6.86 30.59 0.21 -1.48 16 25 C 0.50 12.24 8.02 87.90 0.71 12.94 16 26 O -0.58 -19.66 17.60 -3.05 -0.05 -19.71 16 27 N -0.61 -14.24 3.00 -823.05 -2.47 -16.71 16 28 C 0.09 2.44 10.43 127.77 1.33 3.77 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.34 10.11 8.43 -89.69 -0.76 9.36 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.40 18.22 7.90 -92.71 -0.73 17.49 16 38 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 39 H 0.42 5.20 8.60 -92.71 -0.80 4.40 16 40 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.09 0.82 7.91 -2.39 -0.02 0.80 16 42 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.13 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 1.71 7.93 -2.39 -0.02 1.70 16 46 H 0.08 2.10 5.98 -2.38 -0.01 2.09 16 Total: -1.00 -79.91 386.88 -1.39 -81.30 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -1.26 Total: 36.69 kcal Atomic # 6 Polarization: 28.04 SS G_CDS: 6.95 Total: 34.99 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -8.96 Total: -127.77 kcal Atomic # 8 Polarization: -69.11 SS G_CDS: -0.15 Total: -69.26 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -79.91 -1.39 -81.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669644658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.486 kcal (2) G-P(sol) polarization free energy of solvation -79.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds