Wall clock time and date at job start Tue Mar 31 2020 05:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.47059 * 125.41379 * 2 1 4 4 C 1.54101 * 103.86471 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.54450 * 118.74398 * 4 3 2 6 6 C 1.50696 * 110.55174 * 241.40641 * 4 3 2 7 7 O 1.21280 * 120.00045 * 97.99933 * 6 4 3 8 8 N 1.34775 * 119.99962 * 278.00470 * 6 4 3 9 9 C 1.46508 * 119.99896 * 185.12389 * 8 6 4 10 10 C 1.53005 * 109.45667 * 59.54378 * 9 8 6 11 11 O 1.42890 * 109.47106 * 54.50913 * 10 9 8 12 12 C 1.53035 * 109.45905 * 299.56965 * 9 8 6 13 13 C 1.53196 * 109.31266 * 301.35751 * 12 9 8 14 14 N 1.46928 * 108.77454 * 305.36345 * 13 12 9 15 15 C 1.36936 * 120.63236 * 233.58436 * 14 13 12 16 16 H 1.07997 * 119.99699 * 25.65352 * 15 14 13 17 17 C 1.38812 * 119.99884 * 205.65361 * 15 14 13 18 18 N 1.31613 * 120.00033 * 211.56018 * 17 15 14 19 19 Si 1.86802 * 119.99978 * 31.28708 * 17 15 14 20 20 H 1.48492 * 109.47134 * 270.27310 * 19 17 15 21 21 H 1.48498 * 109.47020 * 30.27320 * 19 17 15 22 22 H 1.48499 * 109.46975 * 150.27014 * 19 17 15 23 23 C 1.46929 * 118.73568 * 53.86479 * 14 13 12 24 24 C 1.53045 * 109.44797 * 179.50543 * 9 8 6 25 25 N 1.47048 * 103.99007 * 0.07720 * 4 3 2 26 26 C 1.33948 * 125.40923 * 180.02562 * 2 1 3 27 27 O 1.21587 * 123.04455 * 0.02562 * 26 2 1 28 28 H 1.08997 * 109.47257 * 89.99734 * 1 2 3 29 29 H 1.08996 * 109.46910 * 210.00199 * 1 2 3 30 30 H 1.09002 * 109.46708 * 329.99306 * 1 2 3 31 31 H 1.09000 * 110.54299 * 61.40563 * 3 2 1 32 32 H 1.09002 * 110.54943 * 298.60142 * 3 2 1 33 33 H 0.96998 * 120.00329 * 5.12542 * 8 6 4 34 34 H 1.08996 * 109.46591 * 174.51077 * 10 9 8 35 35 H 1.08995 * 109.46668 * 294.50715 * 10 9 8 36 36 H 0.96703 * 113.99537 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.49814 * 181.40971 * 12 9 8 38 38 H 1.08994 * 109.49860 * 61.31046 * 12 9 8 39 39 H 1.09003 * 109.58485 * 185.58353 * 13 12 9 40 40 H 1.09000 * 109.58405 * 65.15254 * 13 12 9 41 41 H 0.97008 * 119.99948 * 354.64282 * 18 17 15 42 42 H 1.09003 * 109.58588 * 65.92262 * 23 14 13 43 43 H 1.08997 * 109.58488 * 186.34771 * 23 14 13 44 44 H 1.08991 * 109.49668 * 178.59912 * 24 9 8 45 45 H 1.08994 * 109.49671 * 298.69767 * 24 9 8 46 46 H 0.96998 * 125.40983 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3172 1.1985 0.0000 4 6 3.7505 0.6325 0.0007 5 1 4.2868 0.9483 -0.8941 6 6 4.4901 1.0666 1.2398 7 8 4.5704 0.3189 2.1913 8 7 5.0622 2.2858 1.2906 9 6 5.8756 2.6656 2.4485 10 6 7.0471 1.6916 2.5899 11 8 7.7759 1.6417 1.3619 12 6 5.0159 2.6164 3.7136 13 6 3.8251 3.5669 3.5543 14 7 4.3301 4.9055 3.2196 15 6 3.9606 5.9961 3.9608 16 1 3.6609 5.8724 4.9909 17 6 3.9713 7.2604 3.3880 18 7 4.2355 8.3161 4.1283 19 14 3.6184 7.4629 1.5648 20 1 4.8889 7.3717 0.8016 21 1 2.6941 6.3901 1.1175 22 1 2.9915 8.7877 1.3261 23 6 5.2341 5.0526 2.0707 24 6 6.4135 4.0846 2.2500 25 7 3.5570 -0.8252 -0.0009 26 6 2.2411 -1.0917 -0.0005 27 8 1.7946 -2.2226 -0.0014 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 2.1407 1.7933 0.8962 32 1 2.1407 1.7935 -0.8961 33 1 4.9355 2.9119 0.5607 34 1 7.7057 2.0293 3.3900 35 1 6.6668 0.6981 2.8274 36 1 8.5349 1.0426 1.3791 37 1 5.6138 2.9229 4.5719 38 1 4.6524 1.6004 3.8671 39 1 3.2651 3.6108 4.4884 40 1 3.1773 3.2100 2.7537 41 1 4.3459 8.2206 5.0873 42 1 4.6987 4.8143 1.1516 43 1 5.6039 6.0769 2.0256 44 1 6.9982 4.3773 3.1220 45 1 7.0446 4.1135 1.3619 46 1 4.2668 -1.4863 -0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674319297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:44 Heat of formation + Delta-G solvation = -59.733348 kcal Electronic energy + Delta-G solvation = -30200.167265 eV Core-core repulsion = 26126.612049 eV Total energy + Delta-G solvation = -4073.555215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52264 -40.13231 -37.84951 -36.38298 -36.24647 -34.36616 -34.16943 -32.31602 -30.94141 -30.48372 -29.25368 -27.34295 -26.83650 -24.20623 -23.41476 -22.95861 -21.36873 -20.70934 -20.61827 -19.07808 -18.04938 -17.71969 -17.44732 -17.16197 -16.45559 -15.82383 -15.40213 -15.32935 -14.92291 -14.54231 -14.38234 -14.21941 -14.13252 -13.84556 -13.63828 -13.59679 -13.50159 -13.01327 -12.76219 -12.59270 -12.49544 -12.19683 -12.08723 -11.92683 -11.66170 -11.18673 -10.76388 -10.71573 -10.38748 -10.32153 -10.13794 -10.03433 -9.93753 -9.71167 -9.35816 -9.20424 -8.91451 -8.74540 -8.38573 -7.16990 -6.34832 -3.31467 2.26169 2.59164 2.83536 3.17819 3.31985 3.45675 3.61390 3.72474 4.07594 4.22515 4.43455 4.50991 4.56958 4.81578 4.91299 5.05542 5.09597 5.14738 5.20396 5.35089 5.37343 5.39483 5.51856 5.53606 5.67861 5.69489 5.79519 5.90615 5.98992 6.13731 6.29944 6.38804 6.45024 6.56190 6.57425 6.59853 6.66973 6.85713 6.90720 7.26013 7.55896 7.59521 7.96971 8.19694 8.37654 8.43278 8.99459 9.57777 10.16113 11.03402 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.004527 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.148909 B = 6183.431290 C = 7422.520833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.635 5.635 3 C 0.103 3.897 4 C 0.104 3.896 5 H 0.114 0.886 6 C 0.508 3.492 7 O -0.526 6.526 8 N -0.697 5.697 9 C 0.194 3.806 10 C 0.065 3.935 11 O -0.567 6.567 12 C -0.146 4.146 13 C 0.155 3.845 14 N -0.600 5.600 15 C -0.354 4.354 16 H 0.065 0.935 17 C -0.011 4.011 18 N -0.908 5.908 19 Si 1.052 2.948 20 H -0.292 1.292 21 H -0.288 1.288 22 H -0.297 1.297 23 C 0.134 3.866 24 C -0.135 4.135 25 N -0.715 5.715 26 C 0.705 3.295 27 O -0.586 6.586 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.401 0.599 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.373 0.627 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.016 0.984 41 H 0.265 0.735 42 H 0.018 0.982 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 -13.357 -10.358 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.374 5.374 3 C -0.021 4.021 4 C -0.007 4.007 5 H 0.132 0.868 6 C 0.291 3.709 7 O -0.402 6.402 8 N -0.349 5.349 9 C 0.108 3.892 10 C -0.014 4.014 11 O -0.372 6.372 12 C -0.186 4.186 13 C 0.029 3.971 14 N -0.324 5.324 15 C -0.483 4.483 16 H 0.083 0.917 17 C -0.214 4.214 18 N -0.547 5.547 19 Si 0.883 3.117 20 H -0.220 1.220 21 H -0.214 1.214 22 H -0.224 1.224 23 C 0.007 3.993 24 C -0.175 4.175 25 N -0.376 5.376 26 C 0.406 3.594 27 O -0.464 6.464 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.236 0.764 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.218 0.782 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.036 0.964 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 0.835 -12.893 -11.024 16.984 hybrid contribution 0.899 -1.280 1.156 1.945 sum 1.734 -14.173 -9.868 17.357 Atomic orbital electron populations 1.21409 0.75291 1.03478 1.01853 1.46982 1.06463 1.05556 1.78431 1.22344 0.86218 0.89053 1.04482 1.21849 0.97216 0.83313 0.98311 0.86793 1.20518 0.79374 0.82221 0.88766 1.90665 1.59575 1.53496 1.36478 1.45935 1.50776 1.15249 1.22900 1.20331 0.88553 0.94138 0.86139 1.22681 0.92792 0.99934 0.85974 1.86453 1.45882 1.68864 1.35984 1.22408 0.99038 1.01530 0.95603 1.20807 0.92689 0.85275 0.98351 1.44380 1.50974 1.03316 1.33709 1.20109 1.47928 0.86270 0.93973 0.91729 1.26096 0.97653 0.91256 1.06409 1.70922 1.44000 1.32346 1.07425 0.83948 0.76610 0.75028 0.76121 1.22026 1.21398 1.22439 1.21336 0.89650 0.98591 0.89681 1.22370 0.99546 0.92897 1.02670 1.44847 1.06818 1.06087 1.79845 1.15863 0.81654 0.84589 0.77309 1.90948 1.75895 1.20974 1.58574 0.92553 0.90411 0.90629 0.89141 0.88705 0.76369 0.93200 0.92085 0.78151 0.91362 0.90236 0.92403 0.96622 0.92470 0.96416 0.90400 0.90374 0.91313 0.72531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.10 11.03 59.85 0.66 1.76 16 2 N -0.63 -7.33 3.36 -186.64 -0.63 -7.96 16 3 C 0.10 0.98 7.32 -3.16 -0.02 0.95 16 4 C 0.10 1.02 4.16 -68.21 -0.28 0.74 16 5 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 6 C 0.51 6.45 6.35 -10.99 -0.07 6.38 16 7 O -0.53 -8.39 12.88 5.56 0.07 -8.32 16 8 N -0.70 -8.84 3.85 -47.56 -0.18 -9.02 16 9 C 0.19 2.83 0.44 -131.77 -0.06 2.77 16 10 C 0.06 0.84 5.62 37.16 0.21 1.05 16 11 O -0.57 -6.55 12.94 -35.23 -0.46 -7.01 16 12 C -0.15 -2.43 4.67 -26.61 -0.12 -2.55 16 13 C 0.15 2.98 6.26 -3.71 -0.02 2.96 16 14 N -0.60 -13.29 2.75 -172.04 -0.47 -13.76 16 15 C -0.35 -9.47 9.80 -15.06 -0.15 -9.61 16 16 H 0.06 1.87 8.05 -52.49 -0.42 1.45 16 17 C -0.01 -0.31 4.99 -17.43 -0.09 -0.40 16 18 N -0.91 -27.00 13.70 55.49 0.76 -26.24 16 19 Si 1.05 24.45 25.39 -169.99 -4.32 20.14 16 20 H -0.29 -6.29 6.53 56.52 0.37 -5.92 16 21 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 23 C 0.13 2.59 4.07 -3.48 -0.01 2.58 16 24 C -0.14 -2.17 4.89 -26.38 -0.13 -2.30 16 25 N -0.71 -8.34 5.64 -59.25 -0.33 -8.68 16 26 C 0.71 10.04 8.61 -88.12 -0.76 9.28 16 27 O -0.59 -10.50 17.53 5.29 0.09 -10.41 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.95 7.72 -51.93 -0.40 0.55 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.40 4.51 7.25 -40.82 -0.30 4.21 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.85 6.48 -51.93 -0.34 0.52 16 36 H 0.37 2.75 9.12 45.56 0.42 3.17 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.35 6.07 -51.93 -0.32 1.04 16 39 H 0.06 1.17 7.92 -51.93 -0.41 0.76 16 40 H 0.02 0.29 7.74 -51.93 -0.40 -0.11 16 41 H 0.26 7.85 8.73 -40.82 -0.36 7.50 16 42 H 0.02 0.32 6.35 -51.93 -0.33 -0.01 16 43 H 0.08 1.71 4.92 -51.93 -0.26 1.45 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.07 1.00 7.80 -51.93 -0.41 0.60 16 46 H 0.43 4.61 8.96 -40.82 -0.37 4.24 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -35.49 359.04 -6.98 -42.48 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.08 Total: 9.75 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: -0.85 Total: 13.61 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: -0.86 Total: -65.66 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.29 Total: -25.73 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -4.32 Total: 20.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.49 -6.98 -42.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674319297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.256 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds