Wall clock time and date at job start Tue Mar 31 2020 05:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.47059 * 125.41379 * 2 1 4 4 C 1.54101 * 103.86471 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.54450 * 118.74398 * 4 3 2 6 6 C 1.50696 * 110.55174 * 241.40641 * 4 3 2 7 7 O 1.21280 * 120.00045 * 97.99933 * 6 4 3 8 8 N 1.34775 * 119.99962 * 278.00470 * 6 4 3 9 9 C 1.46508 * 119.99896 * 185.12389 * 8 6 4 10 10 C 1.53005 * 109.45667 * 59.54378 * 9 8 6 11 11 O 1.42890 * 109.47106 * 54.50913 * 10 9 8 12 12 C 1.53035 * 109.45905 * 299.56965 * 9 8 6 13 13 C 1.53196 * 109.31266 * 301.35751 * 12 9 8 14 14 N 1.46928 * 108.77454 * 305.36345 * 13 12 9 15 15 C 1.36936 * 120.63236 * 233.58436 * 14 13 12 16 16 H 1.07997 * 119.99699 * 25.65352 * 15 14 13 17 17 C 1.38812 * 119.99884 * 205.65361 * 15 14 13 18 18 N 1.31613 * 120.00033 * 211.56018 * 17 15 14 19 19 Si 1.86802 * 119.99978 * 31.28708 * 17 15 14 20 20 H 1.48492 * 109.47134 * 270.27310 * 19 17 15 21 21 H 1.48498 * 109.47020 * 30.27320 * 19 17 15 22 22 H 1.48499 * 109.46975 * 150.27014 * 19 17 15 23 23 C 1.46929 * 118.73568 * 53.86479 * 14 13 12 24 24 C 1.53045 * 109.44797 * 179.50543 * 9 8 6 25 25 N 1.47048 * 103.99007 * 0.07720 * 4 3 2 26 26 C 1.33948 * 125.40923 * 180.02562 * 2 1 3 27 27 O 1.21587 * 123.04455 * 0.02562 * 26 2 1 28 28 H 1.08997 * 109.47257 * 89.99734 * 1 2 3 29 29 H 1.08996 * 109.46910 * 210.00199 * 1 2 3 30 30 H 1.09002 * 109.46708 * 329.99306 * 1 2 3 31 31 H 1.09000 * 110.54299 * 61.40563 * 3 2 1 32 32 H 1.09002 * 110.54943 * 298.60142 * 3 2 1 33 33 H 0.96998 * 120.00329 * 5.12542 * 8 6 4 34 34 H 1.08996 * 109.46591 * 174.51077 * 10 9 8 35 35 H 1.08995 * 109.46668 * 294.50715 * 10 9 8 36 36 H 0.96703 * 113.99537 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.49814 * 181.40971 * 12 9 8 38 38 H 1.08994 * 109.49860 * 61.31046 * 12 9 8 39 39 H 1.09003 * 109.58485 * 185.58353 * 13 12 9 40 40 H 1.09000 * 109.58405 * 65.15254 * 13 12 9 41 41 H 0.97008 * 119.99948 * 354.64282 * 18 17 15 42 42 H 1.09003 * 109.58588 * 65.92262 * 23 14 13 43 43 H 1.08997 * 109.58488 * 186.34771 * 23 14 13 44 44 H 1.08991 * 109.49668 * 178.59912 * 24 9 8 45 45 H 1.08994 * 109.49671 * 298.69767 * 24 9 8 46 46 H 0.96998 * 125.40983 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3172 1.1985 0.0000 4 6 3.7505 0.6325 0.0007 5 1 4.2868 0.9483 -0.8941 6 6 4.4901 1.0666 1.2398 7 8 4.5704 0.3189 2.1913 8 7 5.0622 2.2858 1.2906 9 6 5.8756 2.6656 2.4485 10 6 7.0471 1.6916 2.5899 11 8 7.7759 1.6417 1.3619 12 6 5.0159 2.6164 3.7136 13 6 3.8251 3.5669 3.5543 14 7 4.3301 4.9055 3.2196 15 6 3.9606 5.9961 3.9608 16 1 3.6609 5.8724 4.9909 17 6 3.9713 7.2604 3.3880 18 7 4.2355 8.3161 4.1283 19 14 3.6184 7.4629 1.5648 20 1 4.8889 7.3717 0.8016 21 1 2.6941 6.3901 1.1175 22 1 2.9915 8.7877 1.3261 23 6 5.2341 5.0526 2.0707 24 6 6.4135 4.0846 2.2500 25 7 3.5570 -0.8252 -0.0009 26 6 2.2411 -1.0917 -0.0005 27 8 1.7946 -2.2226 -0.0014 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 2.1407 1.7933 0.8962 32 1 2.1407 1.7935 -0.8961 33 1 4.9355 2.9119 0.5607 34 1 7.7057 2.0293 3.3900 35 1 6.6668 0.6981 2.8274 36 1 8.5349 1.0426 1.3791 37 1 5.6138 2.9229 4.5719 38 1 4.6524 1.6004 3.8671 39 1 3.2651 3.6108 4.4884 40 1 3.1773 3.2100 2.7537 41 1 4.3459 8.2206 5.0873 42 1 4.6987 4.8143 1.1516 43 1 5.6039 6.0769 2.0256 44 1 6.9982 4.3773 3.1220 45 1 7.0446 4.1135 1.3619 46 1 4.2668 -1.4863 -0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674319297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:44 Heat of formation + Delta-G solvation = -91.146934 kcal Electronic energy + Delta-G solvation = -30201.529460 eV Core-core repulsion = 26126.612049 eV Total energy + Delta-G solvation = -4074.917411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.46797 -41.26255 -39.08505 -37.56265 -37.28417 -35.70587 -35.06728 -33.95808 -32.40792 -31.95971 -30.16785 -28.36858 -28.04814 -25.19708 -24.96572 -24.41076 -22.69648 -21.89397 -21.60775 -20.39677 -19.40808 -18.89476 -18.61781 -18.14753 -17.40780 -16.90115 -16.69664 -16.54409 -16.17071 -15.84572 -15.54988 -15.36057 -15.27098 -15.18940 -15.11096 -14.59284 -14.46125 -14.29731 -14.08082 -13.83751 -13.43641 -13.31753 -13.26428 -13.19848 -12.91815 -12.56935 -12.30617 -12.16255 -11.80666 -11.71792 -11.53955 -11.49971 -11.26373 -11.13249 -10.77712 -10.42028 -10.26645 -10.00847 -9.56942 -9.10154 -8.47618 -5.41666 1.37162 1.48467 1.63550 1.66649 1.81077 1.86232 2.18691 2.59897 2.90833 3.06266 3.22143 3.29807 3.47841 3.51441 3.82027 3.89966 3.92684 4.10682 4.20092 4.32361 4.44893 4.47477 4.49877 4.54208 4.62226 4.63353 4.70672 4.76524 4.85817 4.91942 4.95123 4.99828 5.05773 5.12713 5.17687 5.32584 5.59431 5.60655 5.83475 6.03619 6.28040 6.33951 6.61207 6.87589 6.96387 7.23463 7.44485 7.63888 8.14895 8.86210 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.004527 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.148909 B = 6183.431290 C = 7422.520833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.636 5.636 3 C 0.101 3.899 4 C 0.110 3.890 5 H 0.158 0.842 6 C 0.509 3.491 7 O -0.562 6.562 8 N -0.691 5.691 9 C 0.198 3.802 10 C 0.077 3.923 11 O -0.570 6.570 12 C -0.135 4.135 13 C 0.157 3.843 14 N -0.611 5.611 15 C -0.344 4.344 16 H 0.021 0.979 17 C -0.065 4.065 18 N -0.947 5.947 19 Si 1.096 2.904 20 H -0.260 1.260 21 H -0.260 1.260 22 H -0.311 1.311 23 C 0.127 3.873 24 C -0.123 4.123 25 N -0.711 5.711 26 C 0.693 3.307 27 O -0.634 6.634 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.413 0.587 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.393 0.607 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.247 0.753 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.094 0.906 46 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 -13.973 -13.945 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.374 5.374 3 C -0.022 4.022 4 C 0.001 3.999 5 H 0.176 0.824 6 C 0.294 3.706 7 O -0.440 6.440 8 N -0.343 5.343 9 C 0.111 3.889 10 C -0.002 4.002 11 O -0.378 6.378 12 C -0.175 4.175 13 C 0.032 3.968 14 N -0.336 5.336 15 C -0.474 4.474 16 H 0.039 0.961 17 C -0.261 4.261 18 N -0.588 5.588 19 Si 0.920 3.080 20 H -0.186 1.186 21 H -0.184 1.184 22 H -0.239 1.239 23 C 0.002 3.998 24 C -0.162 4.162 25 N -0.371 5.371 26 C 0.393 3.607 27 O -0.516 6.516 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.154 0.846 33 H 0.250 0.750 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.242 0.758 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.113 0.887 46 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 1.546 -13.525 -14.638 19.989 hybrid contribution 0.699 -1.138 2.400 2.746 sum 2.245 -14.663 -12.238 19.230 Atomic orbital electron populations 1.21588 0.74249 1.03615 1.03105 1.47177 1.07287 1.05555 1.77399 1.22601 0.85265 0.88333 1.06043 1.22066 0.97690 0.81972 0.98209 0.82449 1.21016 0.78805 0.81596 0.89206 1.90668 1.60827 1.54427 1.38067 1.45811 1.50434 1.15610 1.22447 1.20111 0.89080 0.93939 0.85727 1.22381 0.92377 0.98677 0.86780 1.86383 1.46785 1.69712 1.34875 1.22229 0.98199 1.00340 0.96749 1.20822 0.93800 0.84446 0.97756 1.44392 1.52066 1.02916 1.34275 1.19943 1.46641 0.88136 0.92645 0.96066 1.27397 0.97383 0.90859 1.10457 1.71069 1.47578 1.33594 1.06565 0.83417 0.78133 0.75073 0.71401 1.18566 1.18440 1.23913 1.21490 0.90432 0.98333 0.89500 1.22203 0.98262 0.92615 1.03151 1.44859 1.06075 1.07237 1.78945 1.16196 0.82563 0.84560 0.77359 1.90904 1.76876 1.23021 1.60834 0.90750 0.92145 0.88637 0.89996 0.84644 0.75002 0.92853 0.93064 0.75784 0.92714 0.90406 0.94771 0.94824 0.94409 0.93176 0.92796 0.92040 0.88718 0.72254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.86 11.03 127.77 1.41 3.27 16 2 N -0.64 -13.04 3.36 -863.12 -2.90 -15.94 16 3 C 0.10 1.47 7.32 86.65 0.63 2.10 16 4 C 0.11 1.70 4.16 44.51 0.19 1.89 16 5 H 0.16 1.17 8.14 -2.39 -0.02 1.15 16 6 C 0.51 11.16 6.35 87.66 0.56 11.72 16 7 O -0.56 -16.76 12.88 -3.03 -0.04 -16.80 16 8 N -0.69 -14.66 3.85 -422.79 -1.63 -16.29 16 9 C 0.20 5.22 0.44 3.63 0.00 5.23 16 10 C 0.08 1.78 5.62 71.98 0.40 2.18 16 11 O -0.57 -10.84 12.94 -148.98 -1.93 -12.76 16 12 C -0.14 -4.37 4.67 30.67 0.14 -4.23 16 13 C 0.16 5.92 6.26 86.36 0.54 6.46 16 14 N -0.61 -26.54 2.75 -698.23 -1.92 -28.46 16 15 C -0.34 -18.79 9.80 84.03 0.82 -17.97 16 16 H 0.02 1.32 8.05 -2.91 -0.02 1.29 16 17 C -0.07 -3.63 4.99 84.86 0.42 -3.21 16 18 N -0.95 -58.12 13.70 21.65 0.30 -57.83 16 19 Si 1.10 47.70 25.39 68.60 1.74 49.44 16 20 H -0.26 -9.94 6.53 99.48 0.65 -9.29 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 22 H -0.31 -14.21 7.11 99.48 0.71 -13.51 16 23 C 0.13 4.55 4.07 86.51 0.35 4.91 16 24 C -0.12 -3.57 4.89 30.82 0.15 -3.42 16 25 N -0.71 -14.87 5.64 -459.92 -2.59 -17.46 16 26 C 0.69 18.70 8.61 179.47 1.55 20.25 16 27 O -0.63 -22.73 17.53 -3.99 -0.07 -22.80 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.18 7.92 -2.39 -0.02 1.16 16 30 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.38 7.72 -2.39 -0.02 1.36 16 32 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.41 6.93 7.25 -92.71 -0.67 6.26 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.32 6.48 -2.39 -0.02 1.31 16 36 H 0.39 4.25 9.12 -74.06 -0.68 3.57 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 2.59 6.07 -2.39 -0.01 2.57 16 39 H 0.03 1.41 7.92 -2.39 -0.02 1.39 16 40 H 0.03 1.16 7.74 -2.39 -0.02 1.15 16 41 H 0.25 15.45 8.73 -92.70 -0.81 14.64 16 42 H 0.05 1.50 6.35 -2.39 -0.02 1.49 16 43 H 0.05 2.22 4.92 -2.39 -0.01 2.21 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.09 2.32 7.80 -2.39 -0.02 2.30 16 46 H 0.43 8.46 8.96 -92.71 -0.83 7.63 16 Total: -1.00 -81.25 359.04 -3.11 -84.35 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -1.23 Total: 25.37 kcal Atomic # 6 Polarization: 22.01 SS G_CDS: 7.17 Total: 29.18 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -8.75 Total: -135.97 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -2.04 Total: -52.36 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.74 Total: 49.44 kcal Total: -81.25 -3.11 -84.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674319297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.792 kcal (2) G-P(sol) polarization free energy of solvation -81.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds