Wall clock time and date at job start Tue Mar 31 2020 05:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21285 * 120.00307 * 2 1 4 4 N 1.34780 * 120.00020 * 180.02562 * 2 1 3 5 5 C 1.46508 * 119.99499 * 359.97438 * 4 2 1 6 6 C 1.46491 * 120.00021 * 179.97438 * 4 2 1 7 7 C 1.50702 * 109.46957 * 269.99631 * 6 4 2 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 4 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 H 1.09003 * 112.84940 * 336.20268 * 10 9 7 12 12 C 1.53783 * 113.61254 * 107.50239 * 10 9 7 13 13 C 1.53783 * 87.07930 * 139.98361 * 12 10 9 14 14 H 1.09003 * 113.69289 * 89.12994 * 13 12 10 15 15 N 1.46904 * 113.61788 * 220.01947 * 13 12 10 16 16 C 1.46901 * 110.99774 * 252.49999 * 15 13 12 17 17 C 1.50703 * 109.46708 * 179.97438 * 16 15 13 18 18 O 1.21292 * 120.00253 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99820 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99594 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00280 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99744 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00074 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00034 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46945 * 90.00213 * 24 22 20 26 26 H 1.48499 * 109.47336 * 210.00083 * 24 22 20 27 27 H 1.48498 * 109.47370 * 330.00221 * 24 22 20 28 28 C 1.53780 * 113.61714 * 205.00175 * 10 9 7 29 29 H 1.09003 * 109.47169 * 240.00022 * 1 2 3 30 30 H 1.09004 * 109.46706 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47546 * 119.99960 * 1 2 3 32 32 H 1.09003 * 109.46567 * 269.99816 * 5 4 2 33 33 H 1.08997 * 109.47260 * 29.99912 * 5 4 2 34 34 H 1.08999 * 109.46561 * 150.00345 * 5 4 2 35 35 H 1.09004 * 109.47166 * 149.99897 * 6 4 2 36 36 H 1.08994 * 109.47507 * 29.99603 * 6 4 2 37 37 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 38 38 H 1.08995 * 113.61760 * 254.52995 * 12 10 9 39 39 H 1.08998 * 113.61505 * 25.44279 * 12 10 9 40 40 H 1.00896 * 110.99808 * 128.54194 * 15 13 12 41 41 H 1.08994 * 109.47280 * 299.99412 * 16 15 13 42 42 H 1.08999 * 109.47051 * 60.00321 * 16 15 13 43 43 H 0.97001 * 119.99966 * 359.97438 * 19 17 16 44 44 H 0.96996 * 120.00639 * 180.02562 * 23 22 20 45 45 H 1.08998 * 113.61656 * 334.56745 * 28 10 9 46 46 H 1.09003 * 113.61327 * 105.47325 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4483 -2.4360 -0.0005 6 6 3.6458 -1.1672 -0.0011 7 6 4.1476 -1.1670 -1.4221 8 8 3.3591 -1.1664 -2.3437 9 7 5.4725 -1.1613 -1.6689 10 6 5.9603 -1.1550 -3.0503 11 1 5.2361 -1.5607 -3.7568 12 6 6.5601 0.1925 -3.4856 13 6 7.6456 -0.6160 -4.2157 14 1 7.3839 -0.8738 -5.2420 15 7 8.9902 -0.0360 -4.0985 16 6 9.4169 0.5647 -5.3694 17 6 10.7971 1.1486 -5.2105 18 8 11.3688 1.0723 -4.1435 19 7 11.3958 1.7565 -6.2538 20 6 12.6516 2.2872 -6.1094 21 1 13.1610 2.2184 -5.1596 22 6 13.2691 2.9134 -7.1852 23 7 12.6492 2.9975 -8.3408 24 14 14.9799 3.6371 -6.9883 25 1 15.9950 2.6069 -7.3252 26 1 15.1335 4.7998 -7.8993 27 1 15.1715 4.0801 -5.5839 28 6 7.3717 -1.7448 -3.2080 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8899 32 1 1.2670 -2.7508 1.0272 33 1 0.4957 -2.3055 -0.5139 34 1 2.0372 -3.1955 -0.5147 35 1 4.0094 -2.0573 0.5124 36 1 4.0094 -0.2774 0.5127 37 1 6.1032 -1.1616 -0.9320 38 1 5.9152 0.7616 -4.1551 39 1 6.9427 0.7882 -2.6569 40 1 9.6554 -0.7260 -3.7833 41 1 9.4328 -0.2002 -6.1456 42 1 8.7193 1.3536 -5.6507 43 1 10.9385 1.8179 -7.1070 44 1 13.0803 3.4343 -9.0919 45 1 7.9762 -1.6787 -2.3034 46 1 7.3820 -2.7397 -3.6533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690325123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:45 Heat of formation + Delta-G solvation = -78.228811 kcal Electronic energy + Delta-G solvation = -26718.041084 eV Core-core repulsion = 22643.683845 eV Total energy + Delta-G solvation = -4074.357239 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.70438 -39.78044 -38.58818 -37.91454 -35.78155 -34.60404 -33.84687 -32.63392 -31.19866 -31.00093 -28.51189 -26.97652 -26.35618 -25.77732 -24.31664 -22.84116 -20.97090 -20.12020 -19.53491 -19.11829 -17.87491 -17.60190 -17.40801 -16.99921 -16.34645 -15.89101 -15.57603 -15.35057 -15.20306 -15.03858 -14.43515 -14.22423 -13.97588 -13.73167 -13.55832 -13.41910 -13.28354 -13.08384 -12.93381 -12.60235 -12.51812 -12.48296 -12.27677 -11.96240 -11.74326 -11.54733 -11.24916 -11.01749 -10.98241 -10.61602 -10.38466 -10.34549 -10.21918 -10.20227 -9.49929 -9.19790 -9.09609 -8.43633 -8.06883 -7.94804 -6.40518 -3.81403 2.17659 2.37047 2.47895 3.08498 3.18688 3.27313 3.33498 3.92248 4.13084 4.19081 4.34934 4.39041 4.47311 4.52366 4.60789 4.66418 4.82574 4.85908 4.88987 4.90776 4.96279 5.08240 5.18762 5.21473 5.27425 5.42147 5.45967 5.55778 5.68682 5.80361 5.85957 5.86984 5.98908 6.05441 6.09947 6.28816 6.44118 6.88813 7.23272 7.29502 7.56250 7.66499 7.77421 7.98194 8.07516 8.62442 9.18925 9.55626 10.07000 10.77215 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.001667 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.241318 B =16797.125674 C =17072.792759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.516 3.484 3 O -0.540 6.540 4 N -0.604 5.604 5 C 0.082 3.918 6 C 0.094 3.906 7 C 0.497 3.503 8 O -0.534 6.534 9 N -0.715 5.715 10 C 0.122 3.878 11 H 0.113 0.887 12 C -0.137 4.137 13 C 0.062 3.938 14 H 0.075 0.925 15 N -0.654 5.654 16 C 0.049 3.951 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.147 4.147 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.402 0.598 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.350 0.650 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.095 0.905 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.698 -14.605 15.057 31.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.305 3.695 3 O -0.416 6.416 4 N -0.337 5.337 5 C -0.061 4.061 6 C -0.033 4.033 7 C 0.282 3.718 8 O -0.410 6.410 9 N -0.367 5.367 10 C 0.017 3.983 11 H 0.130 0.870 12 C -0.176 4.176 13 C -0.049 4.049 14 H 0.093 0.907 15 N -0.286 5.286 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.186 4.186 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.237 0.763 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.171 0.829 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.113 0.887 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.738 -13.407 15.190 31.209 hybrid contribution 1.122 -0.448 -0.888 1.499 sum -22.616 -13.855 14.303 30.133 Atomic orbital electron populations 1.21921 0.91326 1.05589 1.04146 1.20870 0.90852 0.82836 0.74927 1.90745 1.70732 1.31053 1.49082 1.47443 1.05129 1.07073 1.74091 1.21826 0.97600 0.84989 1.01645 1.21311 0.81766 1.05743 0.94468 1.21200 0.82661 0.75846 0.92075 1.90694 1.55300 1.48883 1.46137 1.45953 1.06782 1.75088 1.08861 1.22376 0.94495 0.98075 0.83340 0.86960 1.23573 0.96565 0.96499 1.01008 1.22804 0.90626 0.94245 0.97238 0.90728 1.60199 1.02234 1.37240 1.28962 1.21744 0.96798 0.99092 0.90708 1.19822 0.87568 0.84592 0.85400 1.90516 1.66367 1.62820 1.27169 1.41869 1.16447 1.50042 1.11670 1.19709 0.91926 1.32428 0.98888 0.87919 1.25268 1.00147 0.97715 0.94835 1.69611 1.38686 1.44228 1.01769 0.85848 0.81630 0.78386 0.78364 1.20443 1.20922 1.19412 1.23620 0.95823 0.98484 1.00686 0.89378 0.88932 0.89137 0.92223 0.90549 0.90961 0.87396 0.86712 0.76307 0.91391 0.88685 0.82948 0.93801 0.89582 0.77448 0.91875 0.88650 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 8.87 36.01 0.32 -0.64 16 2 C 0.52 5.17 7.78 -10.98 -0.09 5.08 16 3 O -0.54 -7.92 16.66 5.55 0.09 -7.83 16 4 N -0.60 -4.72 2.36 -182.95 -0.43 -5.15 16 5 C 0.08 0.34 10.24 59.85 0.61 0.95 16 6 C 0.09 0.69 5.89 -5.20 -0.03 0.66 16 7 C 0.50 5.20 7.90 -10.98 -0.09 5.11 16 8 O -0.53 -7.73 16.03 5.55 0.09 -7.64 16 9 N -0.72 -6.31 5.35 -53.02 -0.28 -6.59 16 10 C 0.12 1.25 4.24 -67.12 -0.28 0.97 16 11 H 0.11 1.27 7.46 -51.93 -0.39 0.88 16 12 C -0.14 -1.67 7.68 -25.92 -0.20 -1.87 16 13 C 0.06 0.75 4.14 -66.90 -0.28 0.48 16 14 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 15 N -0.65 -10.40 6.18 -107.13 -0.66 -11.06 16 16 C 0.05 0.88 6.01 -4.97 -0.03 0.85 16 17 C 0.44 10.52 7.82 -10.98 -0.09 10.44 16 18 O -0.58 -15.97 15.78 5.55 0.09 -15.88 16 19 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 20 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 24 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C -0.15 -1.38 7.40 -25.92 -0.19 -1.58 16 29 H 0.09 0.26 8.11 -51.93 -0.42 -0.16 16 30 H 0.09 0.56 8.12 -51.93 -0.42 0.13 16 31 H 0.09 0.41 7.40 -51.93 -0.38 0.02 16 32 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.08 0.24 6.44 -51.93 -0.33 -0.09 16 34 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 35 H 0.11 0.38 8.07 -51.93 -0.42 -0.04 16 36 H 0.11 0.90 7.42 -51.93 -0.39 0.52 16 37 H 0.40 2.50 8.73 -40.82 -0.36 2.14 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.35 5.63 8.25 -39.29 -0.32 5.31 16 41 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 42 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 43 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.10 0.86 8.12 -51.93 -0.42 0.44 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 391.00 15.07 5.89 5.89 Total: -1.00 -37.95 391.00 -7.21 -45.15 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -7.05 Total: 13.16 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -0.58 Total: 12.33 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.71 Total: -61.41 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: 0.27 Total: -31.35 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.95 -7.21 -45.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690325123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.074 kcal (2) G-P(sol) polarization free energy of solvation -37.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds