Wall clock time and date at job start Tue Mar 31 2020 05:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21285 * 120.00307 * 2 1 4 4 N 1.34780 * 120.00020 * 180.02562 * 2 1 3 5 5 C 1.46508 * 119.99499 * 359.97438 * 4 2 1 6 6 C 1.46491 * 120.00021 * 179.97438 * 4 2 1 7 7 C 1.50702 * 109.46957 * 269.99631 * 6 4 2 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 4 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 H 1.09003 * 112.84940 * 336.20268 * 10 9 7 12 12 C 1.53783 * 113.61254 * 107.50239 * 10 9 7 13 13 C 1.53783 * 87.07930 * 139.98361 * 12 10 9 14 14 H 1.09003 * 113.69289 * 89.12994 * 13 12 10 15 15 N 1.46904 * 113.61788 * 220.01947 * 13 12 10 16 16 C 1.46901 * 110.99774 * 252.49999 * 15 13 12 17 17 C 1.50703 * 109.46708 * 179.97438 * 16 15 13 18 18 O 1.21292 * 120.00253 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99820 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99594 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00280 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99744 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00074 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00034 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46945 * 90.00213 * 24 22 20 26 26 H 1.48499 * 109.47336 * 210.00083 * 24 22 20 27 27 H 1.48498 * 109.47370 * 330.00221 * 24 22 20 28 28 C 1.53780 * 113.61714 * 205.00175 * 10 9 7 29 29 H 1.09003 * 109.47169 * 240.00022 * 1 2 3 30 30 H 1.09004 * 109.46706 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47546 * 119.99960 * 1 2 3 32 32 H 1.09003 * 109.46567 * 269.99816 * 5 4 2 33 33 H 1.08997 * 109.47260 * 29.99912 * 5 4 2 34 34 H 1.08999 * 109.46561 * 150.00345 * 5 4 2 35 35 H 1.09004 * 109.47166 * 149.99897 * 6 4 2 36 36 H 1.08994 * 109.47507 * 29.99603 * 6 4 2 37 37 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 38 38 H 1.08995 * 113.61760 * 254.52995 * 12 10 9 39 39 H 1.08998 * 113.61505 * 25.44279 * 12 10 9 40 40 H 1.00896 * 110.99808 * 128.54194 * 15 13 12 41 41 H 1.08994 * 109.47280 * 299.99412 * 16 15 13 42 42 H 1.08999 * 109.47051 * 60.00321 * 16 15 13 43 43 H 0.97001 * 119.99966 * 359.97438 * 19 17 16 44 44 H 0.96996 * 120.00639 * 180.02562 * 23 22 20 45 45 H 1.08998 * 113.61656 * 334.56745 * 28 10 9 46 46 H 1.09003 * 113.61327 * 105.47325 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4483 -2.4360 -0.0005 6 6 3.6458 -1.1672 -0.0011 7 6 4.1476 -1.1670 -1.4221 8 8 3.3591 -1.1664 -2.3437 9 7 5.4725 -1.1613 -1.6689 10 6 5.9603 -1.1550 -3.0503 11 1 5.2361 -1.5607 -3.7568 12 6 6.5601 0.1925 -3.4856 13 6 7.6456 -0.6160 -4.2157 14 1 7.3839 -0.8738 -5.2420 15 7 8.9902 -0.0360 -4.0985 16 6 9.4169 0.5647 -5.3694 17 6 10.7971 1.1486 -5.2105 18 8 11.3688 1.0723 -4.1435 19 7 11.3958 1.7565 -6.2538 20 6 12.6516 2.2872 -6.1094 21 1 13.1610 2.2184 -5.1596 22 6 13.2691 2.9134 -7.1852 23 7 12.6492 2.9975 -8.3408 24 14 14.9799 3.6371 -6.9883 25 1 15.9950 2.6069 -7.3252 26 1 15.1335 4.7998 -7.8993 27 1 15.1715 4.0801 -5.5839 28 6 7.3717 -1.7448 -3.2080 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8899 32 1 1.2670 -2.7508 1.0272 33 1 0.4957 -2.3055 -0.5139 34 1 2.0372 -3.1955 -0.5147 35 1 4.0094 -2.0573 0.5124 36 1 4.0094 -0.2774 0.5127 37 1 6.1032 -1.1616 -0.9320 38 1 5.9152 0.7616 -4.1551 39 1 6.9427 0.7882 -2.6569 40 1 9.6554 -0.7260 -3.7833 41 1 9.4328 -0.2002 -6.1456 42 1 8.7193 1.3536 -5.6507 43 1 10.9385 1.8179 -7.1070 44 1 13.0803 3.4343 -9.0919 45 1 7.9762 -1.6787 -2.3034 46 1 7.3820 -2.7397 -3.6533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690325123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:44 Heat of formation + Delta-G solvation = -109.614528 kcal Electronic energy + Delta-G solvation = -26719.402071 eV Core-core repulsion = 22643.683845 eV Total energy + Delta-G solvation = -4075.718226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47947 -40.65617 -40.07591 -39.21502 -36.48498 -36.12726 -35.44740 -33.76121 -33.22087 -31.58997 -29.10079 -28.37352 -27.04846 -26.71498 -26.00594 -23.88616 -21.79676 -21.24531 -20.83319 -20.17205 -19.89407 -18.37839 -18.10760 -17.92332 -17.51436 -16.94409 -16.83664 -16.41695 -16.33556 -16.14619 -15.96434 -15.72963 -15.16171 -14.99681 -14.45724 -14.36945 -14.21894 -13.87482 -13.53430 -13.52324 -13.45360 -13.38223 -13.24453 -13.12360 -13.00399 -12.87987 -12.69534 -12.43416 -12.26188 -12.14291 -11.96532 -11.56625 -11.51002 -11.18103 -10.98853 -10.35421 -10.04155 -10.02823 -9.73244 -9.33691 -8.47631 -5.96739 1.37534 1.41284 1.47033 1.54365 1.58066 1.91520 2.03733 2.28037 2.38600 2.97734 3.19567 3.46966 3.53463 3.64581 3.70291 3.81276 3.93326 4.02585 4.19979 4.27862 4.29346 4.37245 4.43932 4.48400 4.52794 4.58930 4.59193 4.78782 4.79488 4.83033 4.91167 4.99066 5.05832 5.08820 5.14719 5.35269 5.39877 5.56371 5.91281 6.12812 6.30984 6.43148 6.53469 6.58672 7.09871 7.11129 7.22642 7.54736 8.09651 8.69757 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.001667 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.241318 B =16797.125674 C =17072.792759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.501 3.499 3 O -0.601 6.601 4 N -0.603 5.603 5 C 0.076 3.924 6 C 0.093 3.907 7 C 0.493 3.507 8 O -0.579 6.579 9 N -0.705 5.705 10 C 0.130 3.870 11 H 0.105 0.895 12 C -0.143 4.143 13 C 0.059 3.941 14 H 0.086 0.914 15 N -0.667 5.667 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.995 3.005 25 H -0.269 1.269 26 H -0.271 1.271 27 H -0.273 1.273 28 C -0.127 4.127 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.153 0.847 36 H 0.107 0.893 37 H 0.417 0.583 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.349 0.651 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.103 0.897 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.404 -16.458 15.679 33.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.292 3.708 3 O -0.483 6.483 4 N -0.335 5.335 5 C -0.066 4.066 6 C -0.034 4.034 7 C 0.280 3.720 8 O -0.459 6.459 9 N -0.357 5.357 10 C 0.024 3.976 11 H 0.122 0.878 12 C -0.183 4.183 13 C -0.052 4.052 14 H 0.104 0.896 15 N -0.300 5.300 16 C -0.069 4.069 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.465 4.465 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.194 1.194 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.165 4.165 29 H 0.138 0.862 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.170 0.830 36 H 0.125 0.875 37 H 0.254 0.746 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.169 0.831 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.121 0.879 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.460 -15.318 15.822 32.913 hybrid contribution 1.296 0.091 -1.059 1.676 sum -23.164 -15.228 14.763 31.407 Atomic orbital electron populations 1.21941 0.88224 1.05824 1.06275 1.21707 0.92612 0.82576 0.73912 1.90707 1.72148 1.33221 1.52188 1.47664 1.05509 1.07840 1.72518 1.22102 0.97634 0.83170 1.03671 1.21471 0.81928 1.07432 0.92533 1.21795 0.82607 0.74696 0.92931 1.90670 1.56405 1.51104 1.47693 1.45877 1.06833 1.74150 1.08858 1.22169 0.94843 0.96599 0.83953 0.87753 1.23573 0.96831 0.97322 1.00528 1.22916 0.88283 0.95296 0.98659 0.89602 1.60162 1.03721 1.38044 1.28023 1.21591 0.92822 0.99916 0.92537 1.20872 0.89294 0.83129 0.84193 1.90482 1.67969 1.63915 1.28528 1.41947 1.16110 1.50644 1.12364 1.19691 0.93496 1.34682 0.98649 0.90224 1.26070 1.03676 0.97360 0.94232 1.69673 1.40042 1.44224 1.02207 0.84902 0.77104 0.78016 0.78150 1.19435 1.19607 1.19821 1.23502 0.94582 0.98369 1.00085 0.86158 0.89769 0.87755 0.89375 0.89581 0.90770 0.82992 0.87476 0.74622 0.92637 0.90080 0.83092 0.91250 0.88591 0.77019 0.91290 0.87909 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.87 71.24 0.63 -1.00 16 2 C 0.50 9.92 7.78 87.66 0.68 10.60 16 3 O -0.60 -18.44 16.66 -3.05 -0.05 -18.49 16 4 N -0.60 -8.61 2.36 -851.12 -2.01 -10.62 16 5 C 0.08 0.42 10.24 127.77 1.31 1.73 16 6 C 0.09 1.24 5.89 85.64 0.50 1.75 16 7 C 0.49 9.95 7.90 87.66 0.69 10.65 16 8 O -0.58 -16.77 16.03 -3.04 -0.05 -16.82 16 9 N -0.71 -11.63 5.35 -440.03 -2.36 -13.98 16 10 C 0.13 2.52 4.24 45.52 0.19 2.71 16 11 H 0.10 2.27 7.46 -2.39 -0.02 2.25 16 12 C -0.14 -3.46 7.68 31.12 0.24 -3.22 16 13 C 0.06 1.34 4.14 45.44 0.19 1.53 16 14 H 0.09 1.82 7.87 -2.39 -0.02 1.80 16 15 N -0.67 -20.60 6.18 -492.84 -3.05 -23.65 16 16 C 0.06 2.23 6.01 85.56 0.51 2.74 16 17 C 0.44 21.11 7.82 87.66 0.69 21.80 16 18 O -0.62 -34.70 15.78 -3.07 -0.05 -34.74 16 19 N -0.57 -29.94 5.29 -306.98 -1.62 -31.56 16 20 C -0.34 -19.33 9.68 84.04 0.81 -18.52 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -50.31 13.05 21.67 0.28 -50.02 16 24 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 C -0.13 -2.10 7.40 31.12 0.23 -1.87 16 29 H 0.12 0.39 8.11 -2.39 -0.02 0.37 16 30 H 0.08 0.99 8.12 -2.38 -0.02 0.97 16 31 H 0.10 0.75 7.40 -2.39 -0.02 0.74 16 32 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.09 0.32 6.44 -2.39 -0.02 0.30 16 34 H 0.07 0.42 8.07 -2.39 -0.02 0.40 16 35 H 0.15 0.61 8.07 -2.38 -0.02 0.59 16 36 H 0.11 1.65 7.42 -2.39 -0.02 1.63 16 37 H 0.42 4.47 8.73 -92.71 -0.81 3.66 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.35 10.89 8.25 -89.70 -0.74 10.15 16 41 H 0.07 2.09 8.13 -2.39 -0.02 2.07 16 42 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 43 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 44 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 45 H 0.10 1.60 8.12 -2.39 -0.02 1.58 16 46 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -85.56 391.00 -0.98 -86.54 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: -1.25 Total: 39.35 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 7.15 Total: 28.62 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -8.75 Total: -129.84 kcal Atomic # 8 Polarization: -69.91 SS G_CDS: -0.15 Total: -70.06 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -85.56 -0.98 -86.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690325123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.076 kcal (2) G-P(sol) polarization free energy of solvation -85.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds