Wall clock time and date at job start Tue Mar 31 2020 05:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21278 * 120.00125 * 2 1 4 4 N 1.34777 * 119.99870 * 179.97438 * 2 1 3 5 5 C 1.46508 * 119.99966 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.46913 * 180.02562 * 5 4 2 7 7 O 1.21285 * 120.00356 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99735 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99848 * 179.72148 * 8 6 5 10 10 C 1.50702 * 109.47269 * 180.27249 * 9 8 6 11 11 O 1.21286 * 119.99549 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00191 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99868 * 355.02404 * 12 10 9 14 14 C 1.46495 * 119.99942 * 175.02112 * 12 10 9 15 15 C 1.53007 * 109.47134 * 94.72603 * 14 12 10 16 16 H 1.09002 * 112.73724 * 316.18433 * 15 14 12 17 17 C 1.53498 * 113.46723 * 87.00395 * 15 14 12 18 18 C 1.53498 * 83.34372 * 140.84976 * 17 15 14 19 19 N 1.47062 * 113.46939 * 185.44066 * 15 14 12 20 20 C 1.36941 * 136.05918 * 38.05752 * 19 15 14 21 21 H 1.07997 * 119.99768 * 354.79960 * 20 19 15 22 22 C 1.38807 * 120.00140 * 174.79001 * 20 19 15 23 23 N 1.31617 * 120.00169 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00249 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46786 * 90.00191 * 24 22 20 26 26 H 1.48499 * 109.47386 * 210.00148 * 24 22 20 27 27 H 1.48498 * 109.46725 * 330.00599 * 24 22 20 28 28 H 1.09001 * 109.47500 * 270.00408 * 1 2 3 29 29 H 1.08996 * 109.47081 * 30.00922 * 1 2 3 30 30 H 1.09002 * 109.46821 * 150.00465 * 1 2 3 31 31 H 0.97001 * 120.00310 * 0.02562 * 4 2 1 32 32 H 1.09003 * 109.46662 * 60.00002 * 5 4 2 33 33 H 1.08997 * 109.46832 * 300.00458 * 5 4 2 34 34 H 0.97000 * 119.99811 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.47792 * 300.28038 * 9 8 6 36 36 H 1.09005 * 109.46886 * 60.27820 * 9 8 6 37 37 H 1.08994 * 109.47275 * 90.00290 * 13 12 10 38 38 H 1.09003 * 109.46722 * 210.00318 * 13 12 10 39 39 H 1.08993 * 109.46995 * 329.99375 * 13 12 10 40 40 H 1.08999 * 109.47587 * 214.72397 * 14 12 10 41 41 H 1.09003 * 109.47605 * 334.73142 * 14 12 10 42 42 H 1.08996 * 114.20334 * 254.43749 * 17 15 14 43 43 H 1.08997 * 114.20522 * 27.25801 * 17 15 14 44 44 H 1.08998 * 113.46430 * 219.15332 * 18 17 15 45 45 H 1.08993 * 113.52096 * 88.71922 * 18 17 15 46 46 H 0.97003 * 120.00278 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1481 -2.5880 0.0010 7 8 3.3600 -3.5099 0.0009 8 7 5.4733 -2.8343 0.0019 9 6 5.9616 -4.2155 0.0080 10 6 7.4686 -4.2156 0.0146 11 8 8.0750 -3.1652 0.0148 12 7 8.1424 -5.3828 0.0204 13 6 7.4135 -6.6488 0.1302 14 6 9.6037 -5.3854 -0.0833 15 6 10.2143 -5.4393 1.3186 16 1 9.7204 -4.7662 2.0194 17 6 10.3846 -6.8667 1.8567 18 6 11.7035 -6.3095 2.4100 19 7 11.6799 -5.3180 1.3241 20 6 12.6125 -4.5989 0.6250 21 1 12.3060 -3.9811 -0.2061 22 6 13.9515 -4.6640 0.9848 23 7 14.3251 -5.4172 1.9974 24 14 15.2235 -3.6826 0.0317 25 1 15.3791 -2.3415 0.6502 26 1 16.5253 -4.3965 0.0636 27 1 14.7772 -3.5295 -1.3764 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6958 -2.0073 0.0005 32 1 4.0088 -0.6532 0.8911 33 1 4.0095 -0.6535 -0.8888 34 1 6.1036 -2.0971 0.0031 35 1 5.5942 -4.7269 0.8977 36 1 5.6022 -4.7318 -0.8822 37 1 7.1601 -7.0098 -0.8665 38 1 8.0386 -7.3852 0.6354 39 1 6.4998 -6.4934 0.7037 40 1 9.9260 -6.2566 -0.6536 41 1 9.9338 -4.4778 -0.5887 42 1 9.6607 -7.1449 2.6226 43 1 10.5091 -7.6242 1.0829 44 1 12.5347 -7.0110 2.3392 45 1 11.6074 -5.8688 3.4022 46 1 15.2609 -5.4629 2.2486 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691048274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:28 Heat of formation + Delta-G solvation = -41.382591 kcal Electronic energy + Delta-G solvation = -27240.690390 eV Core-core repulsion = 23167.930923 eV Total energy + Delta-G solvation = -4072.759467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72470 -40.00521 -39.24889 -38.08019 -35.49612 -35.02341 -34.65460 -32.20982 -31.06947 -29.76493 -28.22640 -27.93692 -26.83520 -25.67301 -23.47777 -22.30017 -21.05438 -20.98479 -19.58802 -19.24386 -18.23175 -17.17395 -16.99847 -16.80640 -16.52448 -16.31624 -15.94889 -15.84600 -15.27575 -15.14765 -14.68426 -14.24572 -14.01918 -13.88246 -13.51944 -13.44848 -13.14056 -13.12376 -12.98826 -12.72745 -12.67596 -12.50650 -12.34935 -11.88958 -11.51102 -11.17535 -10.96417 -10.77247 -10.50261 -10.45852 -10.37145 -10.00861 -9.88936 -9.81359 -9.67420 -9.52231 -9.48741 -8.80572 -8.44780 -6.88840 -5.77508 -3.09620 2.08512 2.24112 2.27906 2.49497 2.89580 3.20538 3.40045 3.45373 3.46580 4.18325 4.28821 4.45862 4.46540 4.79988 4.84283 4.90946 4.97826 4.98955 5.02390 5.09314 5.15125 5.29060 5.40078 5.44750 5.47232 5.62208 5.71663 5.83707 5.87154 5.89995 6.10612 6.22475 6.34912 6.43261 6.62484 6.79390 7.01127 7.07161 7.20858 7.33598 7.37461 7.55465 7.67603 7.79156 7.97601 8.05468 9.04056 9.70442 10.63533 11.40529 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002094 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.548533 B =13368.829660 C =14365.294515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.512 3.488 3 O -0.547 6.547 4 N -0.720 5.720 5 C 0.099 3.901 6 C 0.514 3.486 7 O -0.543 6.543 8 N -0.710 5.710 9 C 0.102 3.898 10 C 0.502 3.498 11 O -0.531 6.531 12 N -0.603 5.603 13 C 0.072 3.928 14 C 0.114 3.886 15 C 0.133 3.867 16 H 0.043 0.957 17 C -0.170 4.170 18 C 0.157 3.843 19 N -0.600 5.600 20 C -0.217 4.217 21 H 0.081 0.919 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.413 0.587 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.417 0.583 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.025 0.975 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.356 -0.107 -3.962 26.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.299 3.701 3 O -0.424 6.424 4 N -0.376 5.376 5 C -0.029 4.029 6 C 0.300 3.700 7 O -0.420 6.420 8 N -0.365 5.365 9 C -0.025 4.025 10 C 0.288 3.712 11 O -0.408 6.408 12 N -0.336 5.336 13 C -0.071 4.071 14 C -0.009 4.009 15 C 0.025 3.975 16 H 0.060 0.940 17 C -0.208 4.208 18 C 0.032 3.968 19 N -0.326 5.326 20 C -0.344 4.344 21 H 0.099 0.901 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.251 0.749 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.256 0.744 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -25.756 0.643 -4.060 26.082 hybrid contribution 0.937 0.386 -0.264 1.047 sum -24.820 1.029 -4.324 25.215 Atomic orbital electron populations 1.21862 0.91025 1.05095 1.05031 1.20862 0.90823 0.82989 0.75383 1.90753 1.70781 1.31392 1.49515 1.45828 1.05850 1.10048 1.75896 1.21036 0.82510 0.93878 1.05445 1.20462 0.82305 0.91263 0.76007 1.90700 1.55185 1.45902 1.50242 1.45633 1.07193 1.09122 1.74588 1.21161 0.92018 0.84552 1.04766 1.20392 0.89279 0.84325 0.77199 1.90750 1.69608 1.30794 1.49654 1.47812 1.08210 1.05668 1.71916 1.21911 0.97246 0.86121 1.01826 1.21963 0.75801 1.03569 0.99547 1.22405 0.87585 0.94029 0.93470 0.93991 1.23777 1.00098 0.96529 1.00397 1.21934 0.93516 0.90607 0.90765 1.45700 0.98783 1.48853 1.39240 1.18920 0.86077 1.20993 1.08420 0.90139 1.24810 0.97035 1.00315 0.98237 1.69840 1.15749 1.42126 1.28955 0.86132 0.81032 0.79501 0.79194 1.21566 1.21657 1.20558 0.88620 0.88663 0.89952 0.74937 0.87919 0.87952 0.74445 0.88199 0.88203 0.92341 0.89940 0.91196 0.90198 0.89633 0.92743 0.90487 0.91549 0.95725 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.30 36.00 0.37 -0.38 16 2 C 0.51 4.39 7.94 -10.99 -0.09 4.30 16 3 O -0.55 -7.07 17.10 5.56 0.10 -6.98 16 4 N -0.72 -5.50 5.53 -61.47 -0.34 -5.84 16 5 C 0.10 0.79 6.15 -5.19 -0.03 0.75 16 6 C 0.51 4.78 7.90 -10.98 -0.09 4.69 16 7 O -0.54 -6.17 15.67 5.55 0.09 -6.08 16 8 N -0.71 -6.78 5.53 -61.47 -0.34 -7.12 16 9 C 0.10 0.99 4.82 -5.20 -0.03 0.96 16 10 C 0.50 6.70 7.73 -10.99 -0.08 6.62 16 11 O -0.53 -9.25 15.22 5.55 0.08 -9.16 16 12 N -0.60 -7.80 2.87 -181.57 -0.52 -8.32 16 13 C 0.07 0.61 10.23 59.85 0.61 1.23 16 14 C 0.11 1.94 5.37 -4.04 -0.02 1.91 16 15 C 0.13 2.65 4.31 -72.39 -0.31 2.34 16 16 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 17 C -0.17 -2.98 7.13 -26.22 -0.19 -3.17 16 18 C 0.16 3.66 7.28 -8.51 -0.06 3.60 16 19 N -0.60 -15.21 3.65 -177.00 -0.65 -15.86 16 20 C -0.22 -6.07 10.55 -15.06 -0.16 -6.23 16 21 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 23 N -0.92 -27.43 11.64 55.49 0.65 -26.79 16 24 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.41 2.72 7.44 -40.82 -0.30 2.41 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.42 4.03 7.44 -40.82 -0.30 3.73 16 35 H 0.10 0.86 7.25 -51.93 -0.38 0.48 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.71 7.16 -51.93 -0.37 0.34 16 39 H 0.07 0.45 6.48 -51.93 -0.34 0.12 16 40 H 0.08 1.28 7.83 -51.93 -0.41 0.87 16 41 H 0.09 1.70 7.36 -51.93 -0.38 1.32 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.27 7.93 -51.93 -0.41 0.86 16 44 H 0.07 1.69 7.36 -51.93 -0.38 1.31 16 45 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -37.00 387.10 -7.34 -44.34 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.05 Total: 2.29 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: -0.17 Total: 16.32 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -1.20 Total: -63.92 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: 0.27 Total: -22.22 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.00 -7.34 -44.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691048274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.958 kcal (2) G-P(sol) polarization free energy of solvation -36.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds