Wall clock time and date at job start Tue Mar 31 2020 05:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21278 * 120.00125 * 2 1 4 4 N 1.34777 * 119.99870 * 179.97438 * 2 1 3 5 5 C 1.46508 * 119.99966 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.46913 * 180.02562 * 5 4 2 7 7 O 1.21285 * 120.00356 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99735 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99848 * 179.72148 * 8 6 5 10 10 C 1.50702 * 109.47269 * 180.27249 * 9 8 6 11 11 O 1.21286 * 119.99549 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00191 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99868 * 355.02404 * 12 10 9 14 14 C 1.46495 * 119.99942 * 175.02112 * 12 10 9 15 15 C 1.53007 * 109.47134 * 94.72603 * 14 12 10 16 16 H 1.09002 * 112.73724 * 316.18433 * 15 14 12 17 17 C 1.53498 * 113.46723 * 87.00395 * 15 14 12 18 18 C 1.53498 * 83.34372 * 140.84976 * 17 15 14 19 19 N 1.47062 * 113.46939 * 185.44066 * 15 14 12 20 20 C 1.36941 * 136.05918 * 38.05752 * 19 15 14 21 21 H 1.07997 * 119.99768 * 354.79960 * 20 19 15 22 22 C 1.38807 * 120.00140 * 174.79001 * 20 19 15 23 23 N 1.31617 * 120.00169 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00249 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46786 * 90.00191 * 24 22 20 26 26 H 1.48499 * 109.47386 * 210.00148 * 24 22 20 27 27 H 1.48498 * 109.46725 * 330.00599 * 24 22 20 28 28 H 1.09001 * 109.47500 * 270.00408 * 1 2 3 29 29 H 1.08996 * 109.47081 * 30.00922 * 1 2 3 30 30 H 1.09002 * 109.46821 * 150.00465 * 1 2 3 31 31 H 0.97001 * 120.00310 * 0.02562 * 4 2 1 32 32 H 1.09003 * 109.46662 * 60.00002 * 5 4 2 33 33 H 1.08997 * 109.46832 * 300.00458 * 5 4 2 34 34 H 0.97000 * 119.99811 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.47792 * 300.28038 * 9 8 6 36 36 H 1.09005 * 109.46886 * 60.27820 * 9 8 6 37 37 H 1.08994 * 109.47275 * 90.00290 * 13 12 10 38 38 H 1.09003 * 109.46722 * 210.00318 * 13 12 10 39 39 H 1.08993 * 109.46995 * 329.99375 * 13 12 10 40 40 H 1.08999 * 109.47587 * 214.72397 * 14 12 10 41 41 H 1.09003 * 109.47605 * 334.73142 * 14 12 10 42 42 H 1.08996 * 114.20334 * 254.43749 * 17 15 14 43 43 H 1.08997 * 114.20522 * 27.25801 * 17 15 14 44 44 H 1.08998 * 113.46430 * 219.15332 * 18 17 15 45 45 H 1.08993 * 113.52096 * 88.71922 * 18 17 15 46 46 H 0.97003 * 120.00278 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1481 -2.5880 0.0010 7 8 3.3600 -3.5099 0.0009 8 7 5.4733 -2.8343 0.0019 9 6 5.9616 -4.2155 0.0080 10 6 7.4686 -4.2156 0.0146 11 8 8.0750 -3.1652 0.0148 12 7 8.1424 -5.3828 0.0204 13 6 7.4135 -6.6488 0.1302 14 6 9.6037 -5.3854 -0.0833 15 6 10.2143 -5.4393 1.3186 16 1 9.7204 -4.7662 2.0194 17 6 10.3846 -6.8667 1.8567 18 6 11.7035 -6.3095 2.4100 19 7 11.6799 -5.3180 1.3241 20 6 12.6125 -4.5989 0.6250 21 1 12.3060 -3.9811 -0.2061 22 6 13.9515 -4.6640 0.9848 23 7 14.3251 -5.4172 1.9974 24 14 15.2235 -3.6826 0.0317 25 1 15.3791 -2.3415 0.6502 26 1 16.5253 -4.3965 0.0636 27 1 14.7772 -3.5295 -1.3764 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6958 -2.0073 0.0005 32 1 4.0088 -0.6532 0.8911 33 1 4.0095 -0.6535 -0.8888 34 1 6.1036 -2.0971 0.0031 35 1 5.5942 -4.7269 0.8977 36 1 5.6022 -4.7318 -0.8822 37 1 7.1601 -7.0098 -0.8665 38 1 8.0386 -7.3852 0.6354 39 1 6.4998 -6.4934 0.7037 40 1 9.9260 -6.2566 -0.6536 41 1 9.9338 -4.4778 -0.5887 42 1 9.6607 -7.1449 2.6226 43 1 10.5091 -7.6242 1.0829 44 1 12.5347 -7.0110 2.3392 45 1 11.6074 -5.8688 3.4022 46 1 15.2609 -5.4629 2.2486 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691048274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:27 Heat of formation + Delta-G solvation = -71.464509 kcal Electronic energy + Delta-G solvation = -27241.994840 eV Core-core repulsion = 23167.930923 eV Total energy + Delta-G solvation = -4074.063917 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.58793 -40.95527 -40.13994 -39.61955 -36.61115 -35.82451 -35.42573 -34.28907 -31.69247 -30.75590 -29.91906 -29.10345 -27.60655 -26.64418 -25.42650 -23.77592 -21.78660 -21.65766 -21.09553 -20.52348 -19.04477 -18.68601 -18.03260 -17.73931 -17.41896 -17.27528 -16.94785 -16.78633 -16.62485 -16.11047 -15.94330 -15.68820 -15.41270 -14.87776 -14.46747 -14.35341 -14.27900 -14.04313 -13.90788 -13.67557 -13.48617 -13.39191 -13.30102 -13.12999 -12.96238 -12.91619 -12.63740 -12.51007 -12.25155 -11.83613 -11.62003 -11.29585 -11.25975 -11.10010 -10.96501 -10.87600 -10.40769 -10.22990 -9.66204 -8.92343 -7.93460 -5.25843 1.34498 1.42084 1.44353 1.47186 1.50222 1.53182 1.59709 2.04519 2.44663 2.49650 3.27771 3.34009 3.47304 3.52697 3.82559 3.94661 4.17913 4.22763 4.25579 4.28805 4.32099 4.34137 4.42677 4.52077 4.55562 4.69116 4.71073 4.83945 4.93263 4.96960 5.02136 5.06677 5.08011 5.12302 5.21989 5.25884 5.42162 5.53270 5.72538 5.92929 6.25292 6.33056 6.47765 6.90385 6.91070 7.02539 7.17250 7.58733 8.59772 9.24644 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002094 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.548533 B =13368.829660 C =14365.294515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.507 3.493 3 O -0.598 6.598 4 N -0.713 5.713 5 C 0.098 3.902 6 C 0.523 3.477 7 O -0.560 6.560 8 N -0.713 5.713 9 C 0.112 3.888 10 C 0.498 3.502 11 O -0.581 6.581 12 N -0.600 5.600 13 C 0.063 3.937 14 C 0.130 3.870 15 C 0.134 3.866 16 H 0.026 0.974 17 C -0.127 4.127 18 C 0.146 3.854 19 N -0.632 5.632 20 C -0.222 4.222 21 H 0.078 0.922 22 C -0.067 4.067 23 N -0.952 5.952 24 Si 0.975 3.025 25 H -0.291 1.291 26 H -0.290 1.290 27 H -0.267 1.267 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.420 0.580 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.416 0.584 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.037 0.963 45 H 0.008 0.992 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.149 -1.510 -4.757 29.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.297 3.703 3 O -0.479 6.479 4 N -0.369 5.369 5 C -0.029 4.029 6 C 0.309 3.691 7 O -0.439 6.439 8 N -0.367 5.367 9 C -0.014 4.014 10 C 0.286 3.714 11 O -0.461 6.461 12 N -0.332 5.332 13 C -0.078 4.078 14 C 0.005 3.995 15 C 0.027 3.973 16 H 0.044 0.956 17 C -0.165 4.165 18 C 0.020 3.980 19 N -0.358 5.358 20 C -0.351 4.351 21 H 0.096 0.904 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.803 3.197 25 H -0.218 1.218 26 H -0.217 1.217 27 H -0.192 1.192 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.259 0.741 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.254 0.746 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.055 0.945 45 H 0.026 0.974 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -28.622 -0.824 -4.867 29.044 hybrid contribution 1.740 0.800 0.014 1.915 sum -26.882 -0.024 -4.853 27.316 Atomic orbital electron populations 1.21899 0.87640 1.06350 1.06397 1.21631 0.92440 0.82223 0.74030 1.90731 1.72078 1.33068 1.52025 1.45851 1.05689 1.10277 1.75106 1.21040 0.82966 0.93153 1.05768 1.20503 0.81888 0.91380 0.75312 1.90691 1.55489 1.46470 1.51255 1.45690 1.07313 1.09233 1.74476 1.21190 0.88773 0.84913 1.06550 1.21053 0.90806 0.83585 0.75930 1.90734 1.70905 1.32640 1.51825 1.47836 1.06568 1.07475 1.71358 1.22263 0.97766 0.83860 1.03872 1.21493 0.78537 1.02328 0.97121 1.22491 0.84643 0.95153 0.95028 0.95645 1.23539 0.96864 0.95214 1.00893 1.21992 0.95791 0.90207 0.89991 1.46103 1.01220 1.48953 1.39497 1.19217 0.87060 1.20385 1.08412 0.90408 1.25617 0.99001 1.01822 0.99602 1.70013 1.15597 1.43840 1.30686 0.85131 0.78413 0.77677 0.78473 1.21803 1.21664 1.19211 0.87048 0.88582 0.87514 0.74099 0.87724 0.87603 0.74591 0.86296 0.86155 0.90088 0.89500 0.88534 0.88846 0.93280 0.88737 0.88565 0.94480 0.97378 0.94278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 10.30 71.23 0.73 -0.37 16 2 C 0.51 8.20 7.94 87.66 0.70 8.90 16 3 O -0.60 -15.52 17.10 -3.02 -0.05 -15.57 16 4 N -0.71 -9.93 5.53 -466.78 -2.58 -12.51 16 5 C 0.10 1.48 6.15 85.63 0.53 2.01 16 6 C 0.52 8.82 7.90 87.65 0.69 9.51 16 7 O -0.56 -11.37 15.67 -3.05 -0.05 -11.42 16 8 N -0.71 -12.51 5.53 -466.79 -2.58 -15.09 16 9 C 0.11 1.87 4.82 85.64 0.41 2.28 16 10 C 0.50 12.59 7.73 87.66 0.68 13.27 16 11 O -0.58 -20.43 15.22 -3.05 -0.05 -20.48 16 12 N -0.60 -14.18 2.87 -846.76 -2.43 -16.61 16 13 C 0.06 0.81 10.23 127.77 1.31 2.12 16 14 C 0.13 4.28 5.37 86.38 0.46 4.74 16 15 C 0.13 5.25 4.31 41.79 0.18 5.44 16 16 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 17 C -0.13 -4.18 7.13 30.93 0.22 -3.96 16 18 C 0.15 6.88 7.28 83.18 0.61 7.49 16 19 N -0.63 -32.59 3.65 -713.90 -2.60 -35.20 16 20 C -0.22 -12.76 10.55 84.03 0.89 -11.87 16 21 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 22 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 23 N -0.95 -58.57 11.64 21.65 0.25 -58.32 16 24 Si 0.97 47.01 29.55 68.60 2.03 49.04 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.42 4.70 7.44 -92.71 -0.69 4.01 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.42 7.85 7.44 -92.71 -0.69 7.16 16 35 H 0.12 1.58 7.25 -2.39 -0.02 1.57 16 36 H 0.12 1.57 8.14 -2.38 -0.02 1.56 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.09 1.08 7.16 -2.39 -0.02 1.06 16 39 H 0.10 0.76 6.48 -2.39 -0.02 0.74 16 40 H 0.09 2.82 7.83 -2.39 -0.02 2.80 16 41 H 0.05 1.99 7.36 -2.39 -0.02 1.97 16 42 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.10 2.85 7.93 -2.39 -0.02 2.83 16 44 H 0.04 1.94 7.36 -2.39 -0.02 1.92 16 45 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -84.54 387.10 -0.56 -85.11 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -0.37 Total: 14.98 kcal Atomic # 6 Polarization: 28.20 SS G_CDS: 7.87 Total: 36.07 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -9.94 Total: -137.73 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -0.15 Total: -47.47 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -84.54 -0.56 -85.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691048274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.642 kcal (2) G-P(sol) polarization free energy of solvation -84.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds