Wall clock time and date at job start Tue Mar 31 2020 05:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36932 * 120.00315 * 2 1 4 4 H 1.08001 * 120.00232 * 204.60610 * 3 2 1 5 5 C 1.38821 * 119.99832 * 24.60453 * 3 2 1 6 6 N 1.31620 * 119.99621 * 12.52494 * 5 3 2 7 7 Si 1.86798 * 120.00099 * 192.52398 * 5 3 2 8 8 H 1.48507 * 109.47115 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.46960 * 119.99759 * 7 5 3 10 10 H 1.48503 * 109.47086 * 240.00196 * 7 5 3 11 11 C 1.46504 * 119.99678 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47048 * 269.99466 * 11 2 1 13 13 O 1.42906 * 109.47220 * 65.00221 * 12 11 2 14 14 C 1.42895 * 114.00463 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47235 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.46904 * 65.00546 * 15 14 13 17 17 C 1.46492 * 120.00395 * 90.00138 * 16 15 14 18 18 C 1.34783 * 119.99548 * 269.71915 * 16 15 14 19 19 O 1.21628 * 119.99974 * 5.38015 * 18 16 15 20 20 C 1.47249 * 119.99617 * 185.37576 * 18 16 15 21 21 C 1.36246 * 126.16336 * 186.27822 * 20 18 16 22 22 N 1.36339 * 106.89077 * 179.90315 * 21 20 18 23 23 C 1.46497 * 126.20341 * 180.13348 * 22 21 20 24 24 C 1.36169 * 107.59944 * 0.35776 * 22 21 20 25 25 O 1.35458 * 125.55525 * 179.79208 * 24 22 21 26 26 N 1.30703 * 108.89415 * 359.77467 * 24 22 21 27 27 H 1.08999 * 109.46764 * 275.05508 * 1 2 3 28 28 H 1.09001 * 109.47063 * 35.05402 * 1 2 3 29 29 H 1.08999 * 109.47498 * 155.05597 * 1 2 3 30 30 H 0.97005 * 119.99430 * 179.97438 * 6 5 3 31 31 H 1.09001 * 109.46840 * 150.00012 * 11 2 1 32 32 H 1.08997 * 109.47099 * 30.00036 * 11 2 1 33 33 H 1.09005 * 109.47468 * 305.00473 * 12 11 2 34 34 H 1.09003 * 109.47525 * 184.99978 * 12 11 2 35 35 H 1.09009 * 109.46822 * 59.99915 * 14 13 12 36 36 H 1.08996 * 109.47321 * 300.00723 * 14 13 12 37 37 H 1.09001 * 109.47589 * 305.00369 * 15 14 13 38 38 H 1.09007 * 109.47190 * 185.00324 * 15 14 13 39 39 H 1.08997 * 109.47736 * 94.90236 * 17 16 15 40 40 H 1.09000 * 109.47533 * 214.90970 * 17 16 15 41 41 H 1.09012 * 109.46877 * 334.90390 * 17 16 15 42 42 H 1.08001 * 126.55592 * 0.03291 * 21 20 18 43 43 H 1.09003 * 109.47449 * 270.29301 * 23 22 21 44 44 H 1.09008 * 109.47000 * 30.28969 * 23 22 21 45 45 H 1.08995 * 109.47164 * 150.28650 * 23 22 21 46 46 H 0.96700 * 114.00059 * 270.00583 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1562 1.2283 -0.3894 5 6 1.5502 2.3335 0.5006 6 7 0.4352 2.2444 1.1942 7 14 2.3259 4.0041 0.1897 8 1 3.5657 3.8332 -0.6097 9 1 1.3703 4.8625 -0.5555 10 1 2.6587 4.6446 1.4875 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4417 13 8 1.2060 -1.9944 2.0806 14 6 1.3324 -2.4189 3.4392 15 6 -0.0566 -2.6921 4.0195 16 7 -0.6662 -3.8229 3.3153 17 6 -0.4616 -5.1879 3.8062 18 6 -1.4200 -3.6069 2.2190 19 8 -1.5144 -2.4857 1.7572 20 6 -2.1291 -4.7283 1.5805 21 6 -2.8227 -4.6783 0.4089 22 7 -3.3153 -5.9300 0.1864 23 6 -4.1248 -6.3501 -0.9601 24 6 -2.9226 -6.7177 1.2254 25 8 -3.2173 -8.0316 1.3730 26 7 -2.2147 -5.9996 2.0569 27 1 -0.3633 0.0906 1.0237 28 1 -0.3633 0.8413 -0.5902 29 1 -0.3634 -0.9318 -0.4334 30 1 0.0164 3.0463 1.5443 31 1 3.1499 -1.1382 -0.5144 32 1 1.6083 -2.0282 -0.5147 33 1 2.9643 -0.9139 1.9811 34 1 3.0732 -2.6071 1.4427 35 1 1.8212 -1.6368 4.0202 36 1 1.9298 -3.3296 3.4812 37 1 -0.6820 -1.8079 3.8968 38 1 0.0328 -2.9297 5.0796 39 1 -1.2955 -5.4721 4.4481 40 1 -0.4040 -5.8734 2.9606 41 1 0.4670 -5.2340 4.3752 42 1 -2.9551 -3.8131 -0.2239 43 1 -5.1807 -6.2043 -0.7322 44 1 -3.8558 -5.7546 -1.8326 45 1 -3.9402 -7.4039 -1.1685 46 1 -4.0381 -8.1987 1.8561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692305815.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:07 Heat of formation + Delta-G solvation = -3.046782 kcal Electronic energy + Delta-G solvation = -29028.574287 eV Core-core repulsion = 24957.477185 eV Total energy + Delta-G solvation = -4071.097101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.31759 -39.18072 -37.57149 -37.07236 -35.36351 -34.73566 -34.25059 -31.32818 -29.97323 -29.11655 -27.83191 -27.25007 -26.20364 -25.44319 -23.64256 -22.72051 -21.80699 -21.43926 -20.08456 -19.38067 -18.39164 -17.28933 -16.59513 -16.47420 -15.99105 -15.77924 -15.45583 -15.16352 -14.79959 -14.67770 -14.38689 -14.29513 -13.56764 -13.40560 -13.18927 -13.08271 -12.91993 -12.82669 -12.43422 -12.28210 -12.16942 -11.96062 -11.78107 -11.22177 -11.10518 -10.72555 -10.61891 -10.55483 -10.28059 -10.23988 -9.93578 -9.75310 -9.68759 -9.61221 -9.47353 -8.64266 -8.62647 -8.31033 -8.19245 -6.41018 -5.44986 -2.93245 1.48193 2.02359 2.25207 3.22680 3.49595 3.56066 3.57965 3.58392 3.83270 4.36112 4.48987 4.54484 4.69450 4.70453 4.98612 5.00470 5.34272 5.42945 5.53736 5.58099 5.63591 5.68416 5.75985 5.81250 5.88187 5.97160 5.99844 6.22545 6.27052 6.34402 6.35597 6.45877 6.51414 6.76152 6.92288 7.01944 7.26460 7.33313 7.49997 7.74854 7.80616 8.02383 8.20078 8.38670 8.66205 8.70900 9.50858 10.15952 10.68744 11.56992 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017673 B = 0.003178 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.941914 B = 8808.983595 C = 9605.378350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.595 5.595 3 C -0.254 4.254 4 H 0.063 0.937 5 C 0.002 3.998 6 N -0.896 5.896 7 Si 0.897 3.103 8 H -0.280 1.280 9 H -0.291 1.291 10 H -0.293 1.293 11 C 0.156 3.844 12 C 0.043 3.957 13 O -0.345 6.345 14 C 0.046 3.954 15 C 0.123 3.877 16 N -0.606 5.606 17 C 0.093 3.907 18 C 0.593 3.407 19 O -0.492 6.492 20 C -0.035 4.035 21 C 0.043 3.957 22 N -0.465 5.465 23 C 0.068 3.932 24 C 0.366 3.634 25 O -0.442 6.442 26 N -0.452 5.452 27 H 0.042 0.958 28 H 0.023 0.977 29 H -0.004 1.004 30 H 0.248 0.752 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.017 0.983 35 H 0.049 0.951 36 H 0.033 0.967 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.197 0.803 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.590 -22.342 2.188 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.317 5.317 3 C -0.385 4.385 4 H 0.081 0.919 5 C -0.196 4.196 6 N -0.541 5.541 7 Si 0.728 3.272 8 H -0.205 1.205 9 H -0.218 1.218 10 H -0.220 1.220 11 C 0.028 3.972 12 C -0.037 4.037 13 O -0.263 6.263 14 C -0.032 4.032 15 C 0.001 3.999 16 N -0.340 5.340 17 C -0.051 4.051 18 C 0.379 3.621 19 O -0.364 6.364 20 C -0.164 4.164 21 C -0.094 4.094 22 N -0.160 5.160 23 C -0.074 4.074 24 C 0.066 3.934 25 O -0.242 6.242 26 N -0.183 5.183 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.015 0.985 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.214 0.786 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -9.167 -22.099 2.227 24.029 hybrid contribution -0.098 0.911 -0.266 0.954 sum -9.265 -21.188 1.961 23.208 Atomic orbital electron populations 1.20611 0.81638 0.94099 0.99952 1.43890 1.02340 0.99968 1.85528 1.19214 0.99230 0.86122 1.33891 0.91898 1.25057 0.98122 0.98203 0.98264 1.70145 1.19959 1.26634 1.37324 0.86299 0.78516 0.85147 0.77267 1.20526 1.21816 1.21987 1.20818 0.95917 0.88991 0.91461 1.23426 0.85743 0.96243 0.98298 1.88175 1.28867 1.86915 1.22331 1.22752 0.96528 0.97317 0.86635 1.21494 0.94053 0.90163 0.94232 1.47461 1.50625 1.07528 1.28407 1.21841 0.99871 0.82708 1.00633 1.16803 0.78807 0.86390 0.80096 1.90986 1.61718 1.22284 1.61381 1.20605 1.06828 0.91915 0.97050 1.22745 0.99842 0.87247 0.99549 1.45808 1.40735 1.09203 1.20264 1.22128 0.95178 1.02785 0.87308 1.20444 1.00610 0.84821 0.87525 1.84886 1.46910 1.14431 1.77946 1.71109 1.18213 1.02716 1.26246 0.93981 0.95850 0.98537 0.94177 0.92951 0.94178 0.93788 0.96543 0.93323 0.94869 0.88760 0.89881 0.93063 0.89691 0.92605 0.78625 0.90203 0.88896 0.89068 0.74421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 5.14 8.63 59.85 0.52 5.66 16 2 N -0.59 -16.59 2.88 -181.12 -0.52 -17.12 16 3 C -0.25 -7.51 9.64 -15.06 -0.15 -7.65 16 4 H 0.06 1.80 7.86 -52.49 -0.41 1.39 16 5 C 0.00 0.07 5.11 -17.43 -0.09 -0.02 16 6 N -0.90 -28.03 10.78 55.49 0.60 -27.43 16 7 Si 0.90 22.98 29.57 -169.99 -5.03 17.95 16 8 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 9 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 10 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 11 C 0.16 3.65 6.11 -4.04 -0.02 3.62 16 12 C 0.04 0.93 6.28 37.16 0.23 1.16 16 13 O -0.34 -7.69 8.50 -47.99 -0.41 -8.09 16 14 C 0.05 0.81 6.28 37.16 0.23 1.05 16 15 C 0.12 1.94 5.82 -4.04 -0.02 1.91 16 16 N -0.61 -9.52 2.86 -182.91 -0.52 -10.05 16 17 C 0.09 1.15 9.28 59.84 0.56 1.71 16 18 C 0.59 10.59 7.35 -12.60 -0.09 10.50 16 19 O -0.49 -10.74 15.47 -7.51 -0.12 -10.85 16 20 C -0.04 -0.53 6.58 -83.06 -0.55 -1.07 16 21 C 0.04 0.53 11.30 -16.27 -0.18 0.35 16 22 N -0.47 -4.44 3.16 -125.77 -0.40 -4.84 16 23 C 0.07 0.33 11.11 59.85 0.66 1.00 16 24 C 0.37 3.94 9.03 -89.17 -0.81 3.14 16 25 O -0.44 -3.41 13.55 -18.07 -0.24 -3.65 16 26 N -0.45 -6.02 8.06 -11.22 -0.09 -6.11 16 27 H 0.04 1.32 7.31 -51.93 -0.38 0.94 16 28 H 0.02 0.69 7.43 -51.93 -0.39 0.30 16 29 H 0.00 -0.11 7.84 -51.93 -0.41 -0.51 16 30 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.05 1.14 8.04 -51.93 -0.42 0.72 16 32 H 0.04 0.90 7.86 -51.93 -0.41 0.50 16 33 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.75 7.49 -51.93 -0.39 1.36 16 38 H 0.08 0.99 8.07 -51.92 -0.42 0.57 16 39 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 40 H 0.08 1.15 5.88 -51.93 -0.31 0.84 16 41 H 0.06 0.59 8.04 -51.92 -0.42 0.17 16 42 H 0.20 2.21 8.06 -52.49 -0.42 1.78 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.09 0.37 8.14 -51.92 -0.42 -0.05 16 45 H 0.09 0.35 8.13 -51.93 -0.42 -0.07 16 46 H 0.40 1.00 9.06 45.56 0.41 1.42 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -39.17 385.02 -7.10 -46.27 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -6.47 Total: -3.23 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: 0.29 Total: 21.33 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: -0.93 Total: -65.54 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.77 Total: -22.60 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.03 Total: 17.95 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.17 -7.10 -46.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692305815.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.228 kcal (2) G-P(sol) polarization free energy of solvation -39.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds