Wall clock time and date at job start Tue Mar 31 2020 05:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36932 * 120.00315 * 2 1 4 4 H 1.08001 * 120.00232 * 204.60610 * 3 2 1 5 5 C 1.38821 * 119.99832 * 24.60453 * 3 2 1 6 6 N 1.31620 * 119.99621 * 12.52494 * 5 3 2 7 7 Si 1.86798 * 120.00099 * 192.52398 * 5 3 2 8 8 H 1.48507 * 109.47115 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.46960 * 119.99759 * 7 5 3 10 10 H 1.48503 * 109.47086 * 240.00196 * 7 5 3 11 11 C 1.46504 * 119.99678 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47048 * 269.99466 * 11 2 1 13 13 O 1.42906 * 109.47220 * 65.00221 * 12 11 2 14 14 C 1.42895 * 114.00463 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47235 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.46904 * 65.00546 * 15 14 13 17 17 C 1.46492 * 120.00395 * 90.00138 * 16 15 14 18 18 C 1.34783 * 119.99548 * 269.71915 * 16 15 14 19 19 O 1.21628 * 119.99974 * 5.38015 * 18 16 15 20 20 C 1.47249 * 119.99617 * 185.37576 * 18 16 15 21 21 C 1.36246 * 126.16336 * 186.27822 * 20 18 16 22 22 N 1.36339 * 106.89077 * 179.90315 * 21 20 18 23 23 C 1.46497 * 126.20341 * 180.13348 * 22 21 20 24 24 C 1.36169 * 107.59944 * 0.35776 * 22 21 20 25 25 O 1.35458 * 125.55525 * 179.79208 * 24 22 21 26 26 N 1.30703 * 108.89415 * 359.77467 * 24 22 21 27 27 H 1.08999 * 109.46764 * 275.05508 * 1 2 3 28 28 H 1.09001 * 109.47063 * 35.05402 * 1 2 3 29 29 H 1.08999 * 109.47498 * 155.05597 * 1 2 3 30 30 H 0.97005 * 119.99430 * 179.97438 * 6 5 3 31 31 H 1.09001 * 109.46840 * 150.00012 * 11 2 1 32 32 H 1.08997 * 109.47099 * 30.00036 * 11 2 1 33 33 H 1.09005 * 109.47468 * 305.00473 * 12 11 2 34 34 H 1.09003 * 109.47525 * 184.99978 * 12 11 2 35 35 H 1.09009 * 109.46822 * 59.99915 * 14 13 12 36 36 H 1.08996 * 109.47321 * 300.00723 * 14 13 12 37 37 H 1.09001 * 109.47589 * 305.00369 * 15 14 13 38 38 H 1.09007 * 109.47190 * 185.00324 * 15 14 13 39 39 H 1.08997 * 109.47736 * 94.90236 * 17 16 15 40 40 H 1.09000 * 109.47533 * 214.90970 * 17 16 15 41 41 H 1.09012 * 109.46877 * 334.90390 * 17 16 15 42 42 H 1.08001 * 126.55592 * 0.03291 * 21 20 18 43 43 H 1.09003 * 109.47449 * 270.29301 * 23 22 21 44 44 H 1.09008 * 109.47000 * 30.28969 * 23 22 21 45 45 H 1.08995 * 109.47164 * 150.28650 * 23 22 21 46 46 H 0.96700 * 114.00059 * 270.00583 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1562 1.2283 -0.3894 5 6 1.5502 2.3335 0.5006 6 7 0.4352 2.2444 1.1942 7 14 2.3259 4.0041 0.1897 8 1 3.5657 3.8332 -0.6097 9 1 1.3703 4.8625 -0.5555 10 1 2.6587 4.6446 1.4875 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4417 13 8 1.2060 -1.9944 2.0806 14 6 1.3324 -2.4189 3.4392 15 6 -0.0566 -2.6921 4.0195 16 7 -0.6662 -3.8229 3.3153 17 6 -0.4616 -5.1879 3.8062 18 6 -1.4200 -3.6069 2.2190 19 8 -1.5144 -2.4857 1.7572 20 6 -2.1291 -4.7283 1.5805 21 6 -2.8227 -4.6783 0.4089 22 7 -3.3153 -5.9300 0.1864 23 6 -4.1248 -6.3501 -0.9601 24 6 -2.9226 -6.7177 1.2254 25 8 -3.2173 -8.0316 1.3730 26 7 -2.2147 -5.9996 2.0569 27 1 -0.3633 0.0906 1.0237 28 1 -0.3633 0.8413 -0.5902 29 1 -0.3634 -0.9318 -0.4334 30 1 0.0164 3.0463 1.5443 31 1 3.1499 -1.1382 -0.5144 32 1 1.6083 -2.0282 -0.5147 33 1 2.9643 -0.9139 1.9811 34 1 3.0732 -2.6071 1.4427 35 1 1.8212 -1.6368 4.0202 36 1 1.9298 -3.3296 3.4812 37 1 -0.6820 -1.8079 3.8968 38 1 0.0328 -2.9297 5.0796 39 1 -1.2955 -5.4721 4.4481 40 1 -0.4040 -5.8734 2.9606 41 1 0.4670 -5.2340 4.3752 42 1 -2.9551 -3.8131 -0.2239 43 1 -5.1807 -6.2043 -0.7322 44 1 -3.8558 -5.7546 -1.8326 45 1 -3.9402 -7.4039 -1.1685 46 1 -4.0381 -8.1987 1.8561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692305815.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:07 Heat of formation + Delta-G solvation = -33.086338 kcal Electronic energy + Delta-G solvation = -29029.876900 eV Core-core repulsion = 24957.477185 eV Total energy + Delta-G solvation = -4072.399714 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.18257 -40.44839 -38.80563 -38.18606 -37.14415 -36.28810 -35.09552 -33.41350 -31.43284 -30.11627 -29.52879 -28.04219 -27.73945 -27.29729 -24.95579 -24.59677 -22.82560 -22.33887 -22.10566 -20.39924 -19.22140 -18.71783 -18.27250 -17.52904 -17.44763 -16.94865 -16.81679 -16.61081 -16.25644 -16.13503 -15.37534 -15.25823 -15.23116 -15.05424 -14.93753 -14.32583 -14.03103 -13.70643 -13.58882 -13.50527 -13.48111 -13.11678 -13.06056 -12.87069 -12.80772 -12.59867 -12.52205 -12.40743 -12.20104 -11.95524 -11.73182 -11.63122 -11.25323 -10.82251 -10.66192 -10.59197 -10.25186 -9.67084 -9.36400 -8.66265 -7.71751 -5.23986 0.54908 1.16200 1.45415 1.46632 1.47934 1.59026 2.13190 2.54708 2.55680 2.82654 3.06195 3.38110 3.67088 3.80124 3.80888 4.07185 4.21365 4.28022 4.38905 4.40458 4.42701 4.49157 4.55449 4.61224 4.61496 4.70167 4.72225 4.86509 4.89901 4.97278 5.00541 5.05984 5.11390 5.19439 5.33622 5.38042 5.67329 5.69683 5.76734 6.00072 6.40020 6.47019 6.63453 6.67158 6.72418 7.22435 7.42895 7.95428 8.45088 9.30158 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017673 B = 0.003178 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.941914 B = 8808.983595 C = 9605.378350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.213 3.787 2 N -0.610 5.610 3 C -0.266 4.266 4 H 0.072 0.928 5 C -0.056 4.056 6 N -0.932 5.932 7 Si 0.970 3.030 8 H -0.263 1.263 9 H -0.292 1.292 10 H -0.293 1.293 11 C 0.151 3.849 12 C 0.051 3.949 13 O -0.376 6.376 14 C 0.042 3.958 15 C 0.127 3.873 16 N -0.605 5.605 17 C 0.097 3.903 18 C 0.585 3.415 19 O -0.549 6.549 20 C -0.067 4.067 21 C 0.045 3.955 22 N -0.457 5.457 23 C 0.061 3.939 24 C 0.378 3.622 25 O -0.439 6.439 26 N -0.472 5.472 27 H 0.005 0.995 28 H -0.002 1.002 29 H 0.008 0.992 30 H 0.244 0.756 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.020 0.980 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.127 0.873 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.199 0.801 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.031 -24.577 1.939 26.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.333 5.333 3 C -0.396 4.396 4 H 0.090 0.910 5 C -0.251 4.251 6 N -0.579 5.579 7 Si 0.798 3.202 8 H -0.188 1.188 9 H -0.219 1.219 10 H -0.220 1.220 11 C 0.025 3.975 12 C -0.028 4.028 13 O -0.295 6.295 14 C -0.036 4.036 15 C 0.004 3.996 16 N -0.338 5.338 17 C -0.044 4.044 18 C 0.373 3.627 19 O -0.425 6.425 20 C -0.195 4.195 21 C -0.094 4.094 22 N -0.150 5.150 23 C -0.080 4.080 24 C 0.076 3.924 25 O -0.243 6.243 26 N -0.203 5.203 27 H 0.023 0.977 28 H 0.017 0.983 29 H 0.026 0.974 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.145 0.855 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.216 0.784 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -8.599 -24.425 1.990 25.971 hybrid contribution -0.334 1.394 -0.193 1.446 sum -8.933 -23.032 1.798 24.769 Atomic orbital electron populations 1.20105 0.82532 0.93369 0.97176 1.44081 1.02098 1.01376 1.85773 1.19600 0.99569 0.86997 1.33436 0.90994 1.25916 0.98799 1.02104 0.98274 1.70356 1.21617 1.27293 1.38601 0.85163 0.78005 0.79983 0.77023 1.18765 1.21927 1.21971 1.21011 0.96268 0.87227 0.93011 1.23173 0.86034 0.97015 0.96573 1.88162 1.29292 1.87325 1.24714 1.22977 0.97958 0.98158 0.84470 1.21502 0.92368 0.89254 0.96475 1.47607 1.49717 1.08701 1.27790 1.21929 1.01431 0.80546 1.00536 1.17302 0.78680 0.86485 0.80230 1.90948 1.63868 1.24535 1.63165 1.20292 1.08683 0.92100 0.98400 1.22804 0.99212 0.88490 0.98859 1.45990 1.40161 1.07887 1.20982 1.22499 0.95666 1.03790 0.85996 1.20510 0.99352 0.85456 0.87095 1.84859 1.48707 1.12291 1.78412 1.70995 1.19676 1.02190 1.27480 0.97678 0.98345 0.97351 0.94698 0.91131 0.93569 0.96145 0.92818 0.93607 0.92209 0.92583 0.85480 0.92102 0.90576 0.90197 0.78366 0.88034 0.87988 0.87472 0.71473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.21 12.61 8.63 127.77 1.10 13.71 16 2 N -0.61 -34.63 2.88 -726.94 -2.09 -36.72 16 3 C -0.27 -15.79 9.64 84.04 0.81 -14.98 16 4 H 0.07 4.07 7.86 -2.91 -0.02 4.05 16 5 C -0.06 -3.36 5.11 84.86 0.43 -2.93 16 6 N -0.93 -60.33 10.78 21.65 0.23 -60.10 16 7 Si 0.97 47.86 29.57 68.60 2.03 49.89 16 8 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 9 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 10 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 11 C 0.15 7.01 6.11 86.38 0.53 7.53 16 12 C 0.05 2.21 6.28 71.98 0.45 2.66 16 13 O -0.38 -17.04 8.50 -136.78 -1.16 -18.20 16 14 C 0.04 1.47 6.28 71.98 0.45 1.93 16 15 C 0.13 4.01 5.82 86.38 0.50 4.52 16 16 N -0.61 -19.05 2.86 -850.86 -2.43 -21.48 16 17 C 0.10 2.28 9.28 127.77 1.19 3.46 16 18 C 0.59 21.72 7.35 86.61 0.64 22.36 16 19 O -0.55 -25.57 15.47 8.08 0.13 -25.45 16 20 C -0.07 -2.02 6.58 40.40 0.27 -1.76 16 21 C 0.05 1.13 11.30 83.53 0.94 2.07 16 22 N -0.46 -7.97 3.16 -662.74 -2.09 -10.06 16 23 C 0.06 0.43 11.11 127.77 1.42 1.85 16 24 C 0.38 7.43 9.03 179.84 1.62 9.05 16 25 O -0.44 -5.51 13.55 -87.56 -1.19 -6.70 16 26 N -0.47 -12.18 8.06 -303.16 -2.44 -14.63 16 27 H 0.00 0.32 7.31 -2.39 -0.02 0.31 16 28 H 0.00 -0.14 7.43 -2.39 -0.02 -0.16 16 29 H 0.01 0.44 7.84 -2.39 -0.02 0.43 16 30 H 0.24 15.25 8.31 -92.70 -0.77 14.48 16 31 H 0.07 2.97 8.04 -2.39 -0.02 2.95 16 32 H 0.05 2.06 7.86 -2.39 -0.02 2.05 16 33 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 2.22 7.49 -2.39 -0.02 2.20 16 38 H 0.13 2.82 8.07 -2.38 -0.02 2.80 16 39 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 40 H 0.08 1.97 5.88 -2.39 -0.01 1.96 16 41 H 0.08 1.46 8.04 -2.38 -0.02 1.44 16 42 H 0.20 4.66 8.06 -2.91 -0.02 4.64 16 43 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 45 H 0.11 0.47 8.13 -2.39 -0.02 0.45 16 46 H 0.42 0.75 9.06 -74.06 -0.67 0.07 16 Total: -1.00 -88.44 385.02 1.65 -86.79 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 0.32 Total: 7.20 kcal Atomic # 6 Polarization: 39.11 SS G_CDS: 10.36 Total: 49.47 kcal Atomic # 7 Polarization: -134.17 SS G_CDS: -8.83 Total: -142.99 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -2.22 Total: -50.35 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -88.44 1.65 -86.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692305815.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.700 kcal (2) G-P(sol) polarization free energy of solvation -88.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds