Wall clock time and date at job start Tue Mar 31 2020 04:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47080 * 2 1 4 4 C 1.52998 * 109.46788 * 239.99644 * 2 1 3 5 5 N 1.46901 * 109.47369 * 65.00304 * 4 2 1 6 6 C 1.46897 * 111.00236 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47090 * 179.97438 * 6 5 4 8 8 O 1.21292 * 120.00026 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99985 * 179.97438 * 7 6 5 10 10 C 1.37101 * 120.00007 * 180.02562 * 9 7 6 11 11 H 1.08000 * 119.99976 * 359.97438 * 10 9 7 12 12 C 1.38951 * 120.00040 * 180.02562 * 10 9 7 13 13 N 1.31409 * 119.99870 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99935 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46859 * 89.99861 * 14 12 10 16 16 H 1.48493 * 109.46882 * 209.99902 * 14 12 10 17 17 H 1.48494 * 109.46928 * 329.99927 * 14 12 10 18 18 C 1.53000 * 109.47052 * 119.99935 * 2 1 3 19 19 N 1.46495 * 109.47374 * 294.99940 * 18 2 1 20 20 C 1.34772 * 120.00630 * 180.02562 * 19 18 2 21 21 O 1.21280 * 119.99690 * 354.79793 * 20 19 18 22 22 C 1.50703 * 120.00703 * 174.80492 * 20 19 18 23 23 C 1.50704 * 115.54444 * 293.70530 * 22 20 19 24 24 N 1.34772 * 120.00171 * 278.75298 * 23 22 20 25 25 O 1.21283 * 119.99522 * 99.02864 * 23 22 20 26 26 C 1.52998 * 117.51901 * 79.40285 * 22 20 19 27 27 C 1.52997 * 117.50321 * 148.03866 * 22 20 19 28 28 H 1.09000 * 109.47276 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46771 * 299.99894 * 1 2 3 30 30 H 1.08992 * 109.47284 * 60.00301 * 1 2 3 31 31 H 1.09006 * 109.46918 * 185.00202 * 4 2 1 32 32 H 1.09001 * 109.47362 * 304.99690 * 4 2 1 33 33 H 1.00902 * 110.99811 * 56.04073 * 5 4 2 34 34 H 1.09000 * 109.46595 * 299.99880 * 6 5 4 35 35 H 1.08989 * 109.47305 * 59.99774 * 6 5 4 36 36 H 0.96991 * 120.00019 * 0.02562 * 9 7 6 37 37 H 0.97005 * 119.99873 * 180.02562 * 13 12 10 38 38 H 1.08996 * 109.47162 * 174.99603 * 18 2 1 39 39 H 1.09003 * 109.47552 * 55.00026 * 18 2 1 40 40 H 0.97005 * 119.99799 * 359.97438 * 19 18 2 41 41 H 0.96995 * 120.00211 * 175.32674 * 24 23 22 42 42 H 0.97000 * 120.00000 * 355.33361 * 24 23 22 43 43 H 1.09007 * 117.49754 * 214.97575 * 26 22 20 44 44 H 1.08997 * 117.50009 * 359.97438 * 26 22 20 45 45 H 1.08993 * 117.49826 * 359.96753 * 27 22 20 46 46 H 1.08990 * 117.49951 * 144.99800 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6514 0.0373 -2.4457 6 6 2.1257 -0.6267 -3.6671 7 6 1.7087 0.1784 -4.8709 8 8 1.0787 1.2046 -4.7255 9 7 2.0365 -0.2414 -6.1089 10 6 1.6576 0.4913 -7.2039 11 1 1.0960 1.4047 -7.0745 12 6 1.9952 0.0583 -8.4804 13 7 2.6781 -1.0533 -8.6378 14 14 1.4782 1.0563 -9.9724 15 1 2.5371 2.0455 -10.2973 16 1 1.2772 0.1480 -11.1299 17 1 0.2095 1.7686 -9.6760 18 6 2.0400 -0.7212 1.2493 19 7 1.6525 0.0353 2.4424 20 6 1.9965 -0.4130 3.6659 21 8 2.5435 -1.4887 3.7858 22 6 1.7012 0.4222 4.8851 23 6 2.4612 1.7198 4.9835 24 7 3.7267 1.7261 5.4468 25 8 1.9321 2.7591 4.6504 26 6 0.2715 0.3977 5.4294 27 6 1.3917 -0.3159 6.1891 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 3.1263 -0.7996 -1.2056 32 1 1.6054 -1.7199 -1.2950 33 1 1.9882 0.9872 -2.3967 34 1 3.2126 -0.7039 -3.6400 35 1 1.6921 -1.6247 -3.7300 36 1 2.5406 -1.0618 -6.2251 37 1 2.9141 -1.3555 -9.5289 38 1 3.1263 -0.7995 1.2056 39 1 1.6054 -1.7198 1.2952 40 1 1.1489 0.8595 2.3517 41 1 4.2391 2.5497 5.4468 42 1 4.1253 0.9070 5.7802 43 1 -0.1194 1.3203 5.8588 44 1 -0.4560 -0.2222 4.9055 45 1 1.4011 -1.4055 6.1651 46 1 1.7377 0.1371 7.1180 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:30 Heat of formation + Delta-G solvation = -94.791192 kcal Electronic energy + Delta-G solvation = -26765.193481 eV Core-core repulsion = 22690.118043 eV Total energy + Delta-G solvation = -4075.075438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.09771 -39.37790 -38.38408 -37.38995 -36.40313 -34.95157 -34.09413 -33.86346 -32.34042 -31.18964 -27.55279 -27.30629 -25.69992 -24.68050 -23.25694 -23.00896 -22.07416 -20.80296 -19.95179 -19.20072 -18.56802 -17.86135 -17.47069 -16.67406 -16.48513 -15.97773 -15.88897 -15.51983 -15.37203 -14.90338 -14.66365 -14.42421 -14.21612 -14.19642 -13.71029 -13.60496 -13.40505 -13.16638 -12.62725 -12.40552 -12.21354 -11.95374 -11.73503 -11.68292 -11.51672 -11.30119 -11.16478 -11.04921 -10.98884 -10.89180 -10.61681 -10.39102 -10.24184 -10.21668 -10.15284 -9.50666 -9.42691 -8.46255 -8.05803 -7.95577 -6.41435 -3.82257 1.80108 2.16499 2.60288 2.76008 3.18141 3.23891 3.26773 3.32932 3.91287 4.06011 4.10118 4.13347 4.25352 4.29772 4.34439 4.68907 4.78633 4.90740 4.98549 5.07703 5.16482 5.24948 5.25956 5.31594 5.42773 5.49074 5.53742 5.67316 5.74113 5.85863 5.89519 5.98370 5.99275 6.18130 6.20294 6.27097 6.40317 6.72696 7.07437 7.19550 7.55519 7.64417 7.66087 7.75301 8.06697 8.61595 9.18195 9.54717 10.06138 10.76295 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.030359 B = 0.001692 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.060845 B =16544.730920 C =16774.639446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.077 0.923 4 C 0.067 3.933 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.123 3.877 19 N -0.715 5.715 20 C 0.558 3.442 21 O -0.529 6.529 22 C -0.201 4.201 23 C 0.563 3.437 24 N -0.845 5.845 25 O -0.527 6.527 26 C -0.128 4.128 27 C -0.132 4.132 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.349 0.651 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.407 0.593 41 H 0.406 0.594 42 H 0.406 0.594 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 -1.024 30.094 30.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.096 0.904 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.201 5.201 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.000 4.000 19 N -0.367 5.367 20 C 0.342 3.658 21 O -0.405 6.405 22 C -0.208 4.208 23 C 0.345 3.655 24 N -0.409 5.409 25 O -0.402 6.402 26 C -0.166 4.166 27 C -0.170 4.170 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.168 0.832 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.243 0.757 41 H 0.238 0.762 42 H 0.235 0.765 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.322 -0.905 29.753 29.768 hybrid contribution 1.408 0.397 -0.819 1.676 sum 1.729 -0.508 28.933 28.989 Atomic orbital electron populations 1.21762 0.93586 1.02177 1.02266 1.21350 0.97798 1.00024 0.92809 0.90433 1.21889 0.97298 0.97966 0.89205 1.60040 1.64150 1.05857 0.99765 1.21665 0.97734 0.98673 0.90115 1.19810 0.85550 0.87932 0.84090 1.90522 1.44074 1.26419 1.85738 1.41865 1.49465 1.24287 1.04451 1.19707 1.32828 1.06739 0.83618 0.87918 1.25268 0.96950 0.96647 0.99124 1.69614 1.38895 1.21750 1.24064 0.85850 0.79155 0.79025 0.80214 1.20443 1.20923 1.19402 1.21476 1.00026 0.95586 0.82947 1.45979 1.57121 1.28121 1.05451 1.18910 0.78559 0.85372 0.83002 1.90735 1.42323 1.21455 1.86020 1.21463 1.03688 0.97986 0.97661 1.19047 0.81793 0.88298 0.76346 1.43771 1.14817 1.15862 1.66412 1.90798 1.68107 1.32944 1.48384 1.23109 0.88813 1.03520 1.01140 1.23121 1.00584 1.01022 0.92242 0.92738 0.93631 0.90301 0.95304 0.90677 0.83202 0.93884 0.89573 0.77459 0.91882 0.91363 0.90805 0.75723 0.76206 0.76493 0.86874 0.87049 0.86606 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.95 37.16 0.33 -1.12 16 2 C -0.10 -0.99 2.57 -90.62 -0.23 -1.23 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.07 0.77 5.07 -3.82 -0.02 0.76 16 5 N -0.67 -10.37 5.58 -115.06 -0.64 -11.02 16 6 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 7 C 0.44 10.41 7.82 -10.99 -0.09 10.32 16 8 O -0.58 -15.84 15.78 5.55 0.09 -15.76 16 9 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 10 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 11 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 14 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 C 0.12 1.15 5.07 -4.04 -0.02 1.13 16 19 N -0.72 -6.41 5.28 -60.30 -0.32 -6.73 16 20 C 0.56 5.43 7.06 -10.99 -0.08 5.35 16 21 O -0.53 -6.66 16.73 5.56 0.09 -6.56 16 22 C -0.20 -1.50 2.24 -156.81 -0.35 -1.85 16 23 C 0.56 4.68 7.24 -10.99 -0.08 4.60 16 24 N -0.84 -4.28 8.87 31.22 0.28 -4.00 16 25 O -0.53 -6.25 17.85 5.56 0.10 -6.15 16 26 C -0.13 -0.74 9.87 -26.73 -0.26 -1.00 16 27 C -0.13 -0.69 9.76 -26.73 -0.26 -0.95 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.40 7.18 -51.93 -0.37 0.03 16 30 H 0.08 1.01 7.75 -51.93 -0.40 0.60 16 31 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.35 5.65 8.43 -39.29 -0.33 5.32 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.39 8.14 -51.94 -0.42 0.97 16 36 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.41 3.37 7.66 -40.82 -0.31 3.06 16 41 H 0.41 1.59 8.93 -40.82 -0.36 1.23 16 42 H 0.41 1.29 8.83 -40.82 -0.36 0.93 16 43 H 0.11 0.62 8.14 -51.92 -0.42 0.20 16 44 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.12 0.64 8.01 -51.93 -0.42 0.23 16 46 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 396.02 15.07 5.97 5.97 Total: -1.00 -35.13 396.02 -7.17 -42.30 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -7.04 Total: 15.33 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -1.33 Total: 8.81 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.02 Total: -60.05 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: 0.28 Total: -28.47 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.13 -7.17 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.489 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds