Wall clock time and date at job start Tue Mar 31 2020 04:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 109.46808 * 2 1 4 4 C 1.52995 * 109.47258 * 119.99617 * 2 1 3 5 5 N 1.46894 * 109.47785 * 295.00825 * 4 2 1 6 6 C 1.46894 * 111.00348 * 179.97438 * 5 4 2 7 7 C 1.50704 * 109.47192 * 179.97438 * 6 5 4 8 8 O 1.21293 * 119.99937 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99912 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99904 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99994 * 359.97438 * 10 9 7 12 12 C 1.38952 * 120.00048 * 179.97438 * 10 9 7 13 13 N 1.31415 * 120.00022 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99993 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.47002 * 90.00169 * 14 12 10 16 16 H 1.48497 * 109.46865 * 210.00196 * 14 12 10 17 17 H 1.48504 * 109.46958 * 330.00218 * 14 12 10 18 18 C 1.52999 * 109.47395 * 240.00484 * 2 1 3 19 19 N 1.46502 * 109.47372 * 64.99793 * 18 2 1 20 20 C 1.34770 * 119.99893 * 180.02562 * 19 18 2 21 21 O 1.21288 * 120.00288 * 354.97926 * 20 19 18 22 22 C 1.50707 * 119.99954 * 174.97713 * 20 19 18 23 23 C 1.50699 * 115.54959 * 279.05379 * 22 20 19 24 24 N 1.34775 * 119.99856 * 294.04151 * 23 22 20 25 25 O 1.21278 * 119.99771 * 114.04496 * 23 22 20 26 26 C 1.52995 * 117.49692 * 133.34499 * 22 20 19 27 27 C 1.52994 * 117.49647 * 64.72358 * 22 20 19 28 28 H 1.09000 * 109.46993 * 60.00047 * 1 2 3 29 29 H 1.08997 * 109.46702 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47247 * 299.99954 * 1 2 3 31 31 H 1.09005 * 109.47362 * 174.99548 * 4 2 1 32 32 H 1.09008 * 109.46567 * 55.00957 * 4 2 1 33 33 H 1.00904 * 111.00067 * 56.03549 * 5 4 2 34 34 H 1.08999 * 109.47236 * 299.99872 * 6 5 4 35 35 H 1.09000 * 109.47061 * 59.99800 * 6 5 4 36 36 H 0.96998 * 119.99957 * 0.02562 * 9 7 6 37 37 H 0.96997 * 119.99846 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.47302 * 184.99759 * 18 2 1 39 39 H 1.09004 * 109.46993 * 304.99542 * 18 2 1 40 40 H 0.97000 * 119.99951 * 0.02562 * 19 18 2 41 41 H 0.97003 * 120.00173 * 354.98662 * 24 23 22 42 42 H 0.97002 * 120.00002 * 174.98921 * 24 23 22 43 43 H 1.09004 * 117.50464 * 359.97438 * 26 22 20 44 44 H 1.09003 * 117.50112 * 145.02215 * 26 22 20 45 45 H 1.08998 * 117.50152 * 214.98240 * 27 22 20 46 46 H 1.09003 * 117.50018 * 359.97438 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 1.6513 0.0374 2.4456 6 6 2.1247 -0.6271 3.6672 7 6 1.7086 0.1786 4.8708 8 8 1.0800 1.2056 4.7253 9 7 2.0359 -0.2416 6.1089 10 6 1.6570 0.4912 7.2039 11 1 1.0965 1.4052 7.0744 12 6 1.9939 0.0577 8.4804 13 7 1.6311 0.7603 9.5300 14 14 2.9627 -1.5236 8.7045 15 1 4.4162 -1.2195 8.6935 16 1 2.5974 -2.1483 10.0012 17 1 2.6445 -2.4602 7.5967 18 6 2.0400 -0.7211 -1.2493 19 7 1.6525 0.0355 -2.4424 20 6 1.9957 -0.4134 -3.6659 21 8 2.7021 -1.3931 -3.7764 22 6 1.5016 0.3019 -4.8970 23 6 0.0952 -0.0326 -5.3226 24 7 -0.2004 -1.2740 -5.7559 25 8 -0.7705 0.8154 -5.2752 26 6 2.5214 0.5999 -5.9979 27 6 1.9861 1.7354 -5.1232 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.1263 -0.7994 1.2056 32 1 1.6054 -1.7198 1.2950 33 1 0.6527 0.1793 2.4753 34 1 1.6904 -1.6249 3.7296 35 1 3.2116 -0.7050 3.6405 36 1 2.5396 -1.0623 6.2252 37 1 1.8660 0.4576 10.4211 38 1 3.1263 -0.7993 -1.2056 39 1 1.6055 -1.7197 -1.2952 40 1 1.1489 0.8596 -2.3518 41 1 0.5050 -1.9312 -5.8630 42 1 -1.1186 -1.5104 -5.9607 43 1 3.5498 0.2790 -5.8317 44 1 2.1753 0.5540 -7.0304 45 1 1.2878 2.4365 -5.5803 46 1 2.6619 2.1612 -4.3815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:33 Heat of formation + Delta-G solvation = -87.450024 kcal Electronic energy + Delta-G solvation = -26815.094921 eV Core-core repulsion = 22740.337821 eV Total energy + Delta-G solvation = -4074.757101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.12816 -39.43118 -38.58690 -37.49501 -36.45850 -35.05780 -34.12034 -33.93214 -32.40184 -31.64230 -27.68694 -27.47582 -25.85976 -24.70057 -23.24646 -23.00878 -22.07497 -20.76675 -19.95009 -19.37878 -18.61935 -18.26906 -17.57246 -16.79288 -16.56171 -16.08461 -15.83425 -15.64002 -15.35493 -15.14692 -14.86705 -14.50822 -14.27318 -14.16912 -13.74743 -13.52610 -13.35599 -13.11233 -12.84197 -12.77291 -12.33065 -12.22054 -12.02638 -11.76920 -11.74077 -11.43241 -11.20259 -11.15277 -11.06908 -10.99536 -10.66906 -10.60359 -10.24459 -10.18385 -9.98392 -9.58274 -9.49394 -8.61123 -8.21235 -8.16349 -6.31934 -3.83441 1.77192 2.13481 2.52960 2.78348 3.01642 3.06307 3.14388 3.21430 3.72764 4.01034 4.07842 4.10000 4.13570 4.22617 4.32540 4.60526 4.63855 4.75638 4.88681 4.96852 5.06268 5.20546 5.24676 5.26210 5.29921 5.41983 5.48697 5.49451 5.61015 5.65628 5.75418 5.79230 5.89418 5.94537 6.04625 6.11360 6.19933 6.73034 7.00783 7.05331 7.53880 7.57494 7.65340 7.69573 8.13548 8.58811 8.94026 9.41485 9.81571 10.81148 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.031021 B = 0.001738 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.383238 B =16105.945181 C =16365.893196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 H 0.091 0.909 4 C 0.067 3.933 5 N -0.668 5.668 6 C 0.048 3.952 7 C 0.449 3.551 8 O -0.565 6.565 9 N -0.590 5.590 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.124 3.876 19 N -0.716 5.716 20 C 0.557 3.443 21 O -0.529 6.529 22 C -0.202 4.202 23 C 0.565 3.435 24 N -0.845 5.845 25 O -0.529 6.529 26 C -0.128 4.128 27 C -0.132 4.132 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.030 0.970 33 H 0.351 0.649 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.371 0.629 37 H 0.273 0.727 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.406 0.594 41 H 0.407 0.593 42 H 0.406 0.594 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.687 -6.728 -31.659 32.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.121 4.121 3 H 0.109 0.891 4 C -0.063 4.063 5 N -0.302 5.302 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.447 6.447 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C 0.000 4.000 19 N -0.367 5.367 20 C 0.341 3.659 21 O -0.405 6.405 22 C -0.209 4.209 23 C 0.348 3.652 24 N -0.408 5.408 25 O -0.404 6.404 26 C -0.166 4.166 27 C -0.170 4.170 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.172 0.828 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.242 0.758 41 H 0.237 0.763 42 H 0.237 0.763 43 H 0.132 0.868 44 H 0.127 0.873 45 H 0.134 0.866 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.846 -5.630 -31.488 32.041 hybrid contribution -0.138 -2.188 0.465 2.241 sum 1.708 -7.818 -31.023 32.038 Atomic orbital electron populations 1.21915 0.94590 1.02065 1.02569 1.21373 0.96583 1.01300 0.92881 0.89052 1.21877 1.00787 0.94387 0.89291 1.60079 1.21251 1.48951 0.99897 1.21707 1.01298 0.95397 0.90119 1.19710 0.85289 0.87908 0.83589 1.90564 1.43127 1.25596 1.85394 1.42206 1.51114 1.23674 1.05990 1.19435 1.33724 1.07581 0.82666 0.86274 1.25047 0.97857 0.98124 0.95167 1.69623 1.45604 1.38494 0.98374 0.86664 0.80887 0.83219 0.78557 1.19576 1.20189 1.19544 1.21458 1.00516 0.95107 0.82879 1.45980 1.57269 1.27999 1.05461 1.18982 0.79989 0.83842 0.83127 1.90737 1.36689 1.26506 1.86561 1.21460 0.95593 1.04116 0.99711 1.18967 0.87603 0.82419 0.76241 1.43770 1.13762 1.13661 1.69650 1.90789 1.48343 1.47525 1.53767 1.23088 0.98055 1.00408 0.95006 1.23153 1.02308 0.88983 1.02530 0.92611 0.92676 0.91238 0.90687 0.95141 0.82839 0.93738 0.89404 0.79680 0.91607 0.90822 0.91254 0.75827 0.76342 0.76260 0.86822 0.87276 0.86604 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.84 37.16 0.33 -1.05 16 2 C -0.10 -0.91 2.63 -90.62 -0.24 -1.15 16 3 H 0.09 0.88 8.14 -51.92 -0.42 0.45 16 4 C 0.07 0.71 5.14 -3.83 -0.02 0.69 16 5 N -0.67 -9.86 6.12 -115.06 -0.70 -10.57 16 6 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 7 C 0.45 10.13 7.82 -10.98 -0.09 10.05 16 8 O -0.56 -15.10 15.78 5.55 0.09 -15.01 16 9 N -0.59 -14.02 5.09 -10.96 -0.06 -14.07 16 10 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 11 H 0.12 3.85 7.39 -52.49 -0.39 3.47 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.72 13.96 55.50 0.77 -24.94 16 14 Si 0.88 19.31 27.74 -169.99 -4.71 14.59 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 18 C 0.12 1.04 5.07 -4.04 -0.02 1.02 16 19 N -0.72 -5.70 5.28 -60.29 -0.32 -6.02 16 20 C 0.56 5.01 6.97 -10.99 -0.08 4.93 16 21 O -0.53 -6.24 17.02 5.55 0.09 -6.14 16 22 C -0.20 -1.46 2.25 -156.82 -0.35 -1.81 16 23 C 0.57 4.67 7.34 -10.99 -0.08 4.59 16 24 N -0.84 -4.47 8.87 31.22 0.28 -4.19 16 25 O -0.53 -6.18 17.55 5.56 0.10 -6.09 16 26 C -0.13 -0.67 9.87 -26.74 -0.26 -0.93 16 27 C -0.13 -0.75 9.76 -26.74 -0.26 -1.01 16 28 H 0.05 0.45 7.18 -51.93 -0.37 0.08 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.72 6.68 -51.93 -0.35 0.37 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.30 8.14 -51.92 -0.42 -0.12 16 33 H 0.35 5.38 6.68 -39.29 -0.26 5.12 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.41 2.82 7.66 -40.82 -0.31 2.50 16 41 H 0.41 1.59 8.83 -40.82 -0.36 1.23 16 42 H 0.41 1.62 8.93 -40.82 -0.36 1.25 16 43 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.12 0.67 8.00 -51.93 -0.42 0.25 16 46 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -36.33 390.63 -6.80 -43.13 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -6.88 Total: 15.12 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -1.35 Total: 8.31 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.03 Total: -59.80 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: 0.28 Total: -27.24 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.33 -6.80 -43.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.319 kcal (2) G-P(sol) polarization free energy of solvation -36.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds