Wall clock time and date at job start Tue Mar 31 2020 04:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46890 * 2 1 4 4 C 1.53004 * 109.46961 * 119.99833 * 2 1 3 5 5 N 1.46895 * 109.47035 * 295.00400 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99996 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99358 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00464 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99431 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46988 * 60.00440 * 14 12 10 16 16 H 1.48496 * 109.47065 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47452 * 300.00298 * 14 12 10 18 18 C 1.52991 * 109.47506 * 240.00110 * 2 1 3 19 19 N 1.46503 * 109.47303 * 65.00004 * 18 2 1 20 20 C 1.34777 * 120.00258 * 180.02562 * 19 18 2 21 21 O 1.21277 * 119.99732 * 0.02562 * 20 19 18 22 22 C 1.50704 * 119.99806 * 179.97438 * 20 19 18 23 23 H 1.08997 * 110.21685 * 40.70356 * 22 20 19 24 24 C 1.54478 * 110.24555 * 278.77095 * 22 20 19 25 25 C 1.54861 * 101.66005 * 266.39195 * 24 22 20 26 26 C 1.51278 * 104.20945 * 335.19196 * 25 24 22 27 27 O 1.21283 * 124.94101 * 196.28328 * 26 25 24 28 28 N 1.34419 * 110.11747 * 16.26962 * 26 25 24 29 29 H 1.08997 * 109.47130 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47563 * 300.00211 * 1 2 3 31 31 H 1.09007 * 109.46934 * 60.00197 * 1 2 3 32 32 H 1.08996 * 109.46863 * 175.00242 * 4 2 1 33 33 H 1.09002 * 109.46661 * 55.00419 * 4 2 1 34 34 H 1.00899 * 111.00672 * 56.04786 * 5 4 2 35 35 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 36 36 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 37 37 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 38 38 H 0.96997 * 119.99770 * 179.97438 * 13 12 10 39 39 H 1.08997 * 109.47346 * 184.99925 * 18 2 1 40 40 H 1.09004 * 109.47143 * 305.00335 * 18 2 1 41 41 H 0.96997 * 119.99959 * 359.97438 * 19 18 2 42 42 H 1.08997 * 110.97228 * 24.53676 * 24 22 20 43 43 H 1.09001 * 110.96383 * 148.30052 * 24 22 20 44 44 H 1.09000 * 110.46589 * 216.52011 * 25 24 22 45 45 H 1.08997 * 110.60292 * 93.93984 * 25 24 22 46 46 H 0.97002 * 124.35070 * 180.42632 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6512 0.0374 2.4456 6 6 2.1246 -0.6272 3.6673 7 6 1.7085 0.1786 4.8709 8 8 1.0792 1.2053 4.7254 9 7 2.0358 -0.2415 6.1090 10 6 1.6568 0.4913 7.2040 11 1 1.0964 1.4054 7.0745 12 6 1.9938 0.0578 8.4804 13 7 2.6752 -1.0548 8.6381 14 14 1.4780 1.0566 9.9724 15 1 -0.0027 1.1632 10.0089 16 1 1.9560 0.3845 11.2073 17 1 2.0702 2.4157 9.8870 18 6 2.0401 -0.7212 -1.2491 19 7 1.6525 0.0354 -2.4423 20 6 1.9957 -0.4135 -3.6659 21 8 2.6250 -1.4440 -3.7792 22 6 1.5966 0.3646 -4.8933 23 1 1.7202 1.4333 -4.7185 24 6 0.1323 0.0507 -5.2724 25 6 0.3134 -1.0938 -6.2998 26 6 1.7066 -0.8819 -6.8499 27 8 2.1350 -1.3826 -7.8681 28 7 2.4007 -0.0579 -6.0461 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.1262 -0.7994 1.2057 33 1 1.6053 -1.7198 1.2951 34 1 0.6527 0.1793 2.4753 35 1 1.6902 -1.6249 3.7298 36 1 3.2115 -0.7051 3.6406 37 1 2.5387 -1.0627 6.2253 38 1 2.9107 -1.3571 9.5291 39 1 3.1263 -0.7994 -1.2055 40 1 1.6054 -1.7197 -1.2951 41 1 1.1483 0.8591 -2.3518 42 1 -0.4314 -0.2889 -4.4036 43 1 -0.3457 0.9160 -5.7318 44 1 -0.4272 -1.0125 -7.0954 45 1 0.2403 -2.0645 -5.8095 46 1 3.3154 0.2220 -6.2075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753637741.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:36 Heat of formation + Delta-G solvation = -114.614352 kcal Electronic energy + Delta-G solvation = -26591.574351 eV Core-core repulsion = 22515.639317 eV Total energy + Delta-G solvation = -4075.935034 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33151 -39.51108 -38.43478 -37.42056 -36.49833 -35.02925 -33.90993 -32.51252 -31.81394 -31.22242 -29.06038 -27.47524 -26.72707 -24.90691 -23.61673 -22.83181 -21.16579 -20.94947 -20.37304 -19.27694 -18.15393 -17.99041 -17.87320 -16.76455 -16.17734 -15.96206 -15.78949 -15.53488 -15.23971 -14.79210 -14.52167 -14.41667 -14.13401 -14.05589 -13.88297 -13.75048 -13.49755 -13.27205 -13.06196 -12.87102 -12.71359 -12.17140 -12.04320 -11.90232 -11.63423 -11.57452 -11.28934 -11.10898 -11.04537 -10.97250 -10.71338 -10.46459 -10.32857 -10.23902 -9.53865 -9.52693 -9.50047 -8.50543 -8.11580 -7.98902 -6.44128 -3.85246 2.03375 2.12876 2.53005 2.98029 3.18052 3.24131 3.28234 3.74590 3.81610 3.87730 4.02934 4.09009 4.24896 4.25657 4.50999 4.61727 4.65646 4.74894 4.80642 5.06532 5.08739 5.17253 5.22449 5.26218 5.28135 5.33652 5.43924 5.51914 5.62486 5.74062 5.77733 5.91388 5.94667 6.02305 6.09981 6.21081 6.23568 6.49826 7.00103 7.14510 7.52434 7.60150 7.70284 7.79372 8.03275 8.58366 9.14985 9.51428 10.02654 10.73423 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.050219 B = 0.001526 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.420313 B =18341.649565 C =18603.025169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 H 0.090 0.910 4 C 0.065 3.935 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.585 6.585 9 N -0.563 5.563 10 C -0.302 4.302 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.901 5.901 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.124 3.876 19 N -0.722 5.722 20 C 0.496 3.504 21 O -0.526 6.526 22 C 0.113 3.887 23 H 0.115 0.885 24 C -0.120 4.120 25 C -0.158 4.158 26 C 0.528 3.472 27 O -0.530 6.530 28 N -0.710 5.710 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.349 0.651 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.403 0.597 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.875 1.535 -25.598 26.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.121 4.121 3 H 0.108 0.892 4 C -0.065 4.065 5 N -0.301 5.301 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.469 6.469 9 N -0.199 5.199 10 C -0.431 4.431 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.542 5.542 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.000 4.000 19 N -0.375 5.375 20 C 0.279 3.721 21 O -0.401 6.401 22 C 0.003 3.997 23 H 0.133 0.867 24 C -0.158 4.158 25 C -0.198 4.198 26 C 0.315 3.685 27 O -0.406 6.406 28 N -0.365 5.365 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.169 0.831 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.238 0.762 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -4.119 1.478 -26.148 26.511 hybrid contribution -0.206 -0.326 1.198 1.259 sum -4.325 1.153 -24.949 25.348 Atomic orbital electron populations 1.21906 0.94660 1.02088 1.02349 1.21367 0.96491 1.01195 0.93011 0.89201 1.21882 1.00812 0.94429 0.89354 1.60100 1.21021 1.49006 1.00018 1.21674 1.01207 0.95383 0.90002 1.19800 0.85678 0.87955 0.84031 1.90515 1.44471 1.26217 1.85714 1.41860 1.49462 1.24167 1.04428 1.19660 1.33064 1.06767 0.83617 0.87953 1.25267 0.96856 0.96632 0.99124 1.69603 1.38747 1.21682 1.24204 0.85910 0.79003 0.79432 0.79817 1.19923 1.20967 1.19874 1.21424 1.00405 0.95250 0.82887 1.46003 1.57766 1.28027 1.05676 1.20999 0.80008 0.86268 0.84791 1.90766 1.38964 1.23898 1.86464 1.21571 0.93010 0.99813 0.85323 0.86734 1.22644 0.93039 0.99708 1.00426 1.22405 0.95857 1.01054 1.00486 1.20812 0.88265 0.76836 0.82637 1.90774 1.75112 1.50120 1.24588 1.45882 1.17127 1.50140 1.23367 0.92620 0.91336 0.92719 0.90770 0.95166 0.83068 0.93838 0.89559 0.77436 0.91790 0.91101 0.91235 0.76238 0.88489 0.88314 0.87445 0.87387 0.74602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.84 37.16 0.33 -0.78 16 2 C -0.10 -0.81 2.63 -90.62 -0.24 -1.05 16 3 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 4 C 0.07 0.70 5.14 -3.82 -0.02 0.68 16 5 N -0.67 -9.90 6.12 -115.06 -0.70 -10.60 16 6 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 7 C 0.44 10.15 7.82 -10.98 -0.09 10.06 16 8 O -0.58 -15.49 15.78 5.54 0.09 -15.41 16 9 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 10 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 11 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 14 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 16 15 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 18 C 0.12 0.94 5.06 -4.05 -0.02 0.92 16 19 N -0.72 -4.05 5.28 -60.30 -0.32 -4.36 16 20 C 0.50 3.66 7.00 -10.98 -0.08 3.58 16 21 O -0.53 -6.47 16.57 5.56 0.09 -6.38 16 22 C 0.11 0.48 3.92 -68.16 -0.27 0.21 16 23 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 24 C -0.12 -0.31 6.71 -24.97 -0.17 -0.48 16 25 C -0.16 -0.85 6.86 -26.62 -0.18 -1.04 16 26 C 0.53 4.91 8.43 -10.86 -0.09 4.82 16 27 O -0.53 -7.31 18.03 5.56 0.10 -7.21 16 28 N -0.71 -4.89 5.46 -53.88 -0.29 -5.19 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.61 6.68 -51.93 -0.35 0.27 16 31 H 0.05 0.28 7.18 -51.92 -0.37 -0.09 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.35 5.29 6.68 -39.29 -0.26 5.02 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.40 1.18 7.65 -40.82 -0.31 0.87 16 42 H 0.10 0.17 7.89 -51.93 -0.41 -0.24 16 43 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 44 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.41 2.59 8.96 -40.82 -0.37 2.22 16 LS Contribution 386.33 15.07 5.82 5.82 Total: -1.00 -36.93 386.33 -7.64 -44.58 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -6.98 Total: 10.84 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -1.09 Total: 9.80 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.65 Total: -57.78 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: 0.28 Total: -29.00 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.93 -7.64 -44.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637741.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.039 kcal (2) G-P(sol) polarization free energy of solvation -36.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds