Wall clock time and date at job start Tue Mar 31 2020 05:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 119.99644 * 2 1 4 4 H 1.08002 * 119.99651 * 202.34053 * 3 2 1 5 5 C 1.38806 * 120.00178 * 22.33985 * 3 2 1 6 6 N 1.31615 * 119.99886 * 11.34972 * 5 3 2 7 7 Si 1.86799 * 120.00084 * 191.34249 * 5 3 2 8 8 H 1.48502 * 109.47017 * 90.00431 * 7 5 3 9 9 H 1.48501 * 109.47463 * 210.00323 * 7 5 3 10 10 H 1.48500 * 109.47357 * 330.00482 * 7 5 3 11 11 C 1.46498 * 120.00622 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46959 * 270.00737 * 11 2 1 13 13 N 1.46507 * 109.46969 * 179.97438 * 12 11 2 14 14 C 1.46502 * 119.99571 * 269.99258 * 13 12 11 15 15 C 1.34774 * 120.00280 * 89.99740 * 13 12 11 16 16 O 1.21287 * 119.99834 * 359.97438 * 15 13 12 17 17 C 1.50696 * 120.00160 * 179.97438 * 15 13 12 18 18 C 1.52991 * 109.47519 * 179.97438 * 17 15 13 19 19 C 1.53001 * 109.47593 * 180.02562 * 18 17 15 20 20 N 1.46496 * 109.47214 * 180.02562 * 19 18 17 21 21 C 1.34770 * 124.17553 * 269.72337 * 20 19 18 22 22 O 1.21233 * 127.15690 * 0.02562 * 21 20 19 23 23 C 1.51582 * 105.68430 * 179.97438 * 21 20 19 24 24 N 1.47311 * 103.59402 * 0.32335 * 23 21 20 25 25 C 1.33789 * 124.18182 * 90.02541 * 20 19 18 26 26 O 1.21544 * 123.76740 * 359.95670 * 25 20 19 27 27 H 1.08996 * 109.47441 * 274.21512 * 1 2 3 28 28 H 1.09006 * 109.47344 * 34.21871 * 1 2 3 29 29 H 1.09003 * 109.47118 * 154.20992 * 1 2 3 30 30 H 0.97008 * 119.99777 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.48048 * 150.00274 * 11 2 1 32 32 H 1.09005 * 109.46730 * 29.99602 * 11 2 1 33 33 H 1.09001 * 109.47741 * 59.99315 * 12 11 2 34 34 H 1.09004 * 109.47200 * 299.98868 * 12 11 2 35 35 H 1.08999 * 109.47215 * 270.00337 * 14 13 12 36 36 H 1.09003 * 109.47036 * 30.00310 * 14 13 12 37 37 H 1.09001 * 109.46511 * 149.99977 * 14 13 12 38 38 H 1.09001 * 109.46815 * 59.99410 * 17 15 13 39 39 H 1.09003 * 109.47058 * 300.00523 * 17 15 13 40 40 H 1.08999 * 109.46981 * 300.00438 * 18 17 15 41 41 H 1.09001 * 109.47469 * 59.99920 * 18 17 15 42 42 H 1.08994 * 109.46788 * 299.99973 * 19 18 17 43 43 H 1.08998 * 109.47166 * 59.99884 * 19 18 17 44 44 H 1.09000 * 110.76854 * 241.71091 * 23 21 20 45 45 H 1.09002 * 110.56423 * 118.83026 * 23 21 20 46 46 H 0.96996 * 126.69026 * 179.77058 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2211 -0.3555 5 6 1.5336 2.3430 0.4569 6 7 0.3840 2.2691 1.0934 7 14 2.3365 4.0048 0.1686 8 1 1.8677 4.5632 -1.1251 9 1 1.9679 4.9304 1.2698 10 1 3.8121 3.8420 0.1319 11 6 2.1976 -1.2686 0.0006 12 6 2.4524 -1.7097 1.4433 13 7 3.1846 -2.9787 1.4439 14 6 2.4516 -4.2472 1.4446 15 6 4.5323 -2.9792 1.4438 16 8 5.1391 -1.9290 1.4428 17 6 5.2854 -4.2845 1.4450 18 6 6.7896 -4.0056 1.4440 19 6 7.5542 -5.3308 1.4445 20 7 8.9946 -5.0636 1.4442 21 6 9.7398 -4.9314 0.3290 22 8 9.3590 -5.0077 -0.8194 23 6 11.1527 -4.6660 0.8095 24 7 11.0294 -4.6889 2.2772 25 6 9.7339 -4.9265 2.5508 26 8 9.2853 -5.0089 3.6774 27 1 -0.3634 0.0755 1.0248 28 1 -0.3634 0.8498 -0.5779 29 1 -0.3633 -0.9253 -0.4471 30 1 -0.0463 3.0776 1.4130 31 1 3.1500 -1.1386 -0.5132 32 1 1.6085 -2.0286 -0.5129 33 1 1.5000 -1.8398 1.9572 34 1 3.0416 -0.9498 1.9569 35 1 2.2699 -4.5612 2.4725 36 1 1.4991 -4.1167 0.9308 37 1 3.0404 -5.0072 0.9311 38 1 5.0217 -4.8568 0.5556 39 1 5.0218 -4.8552 2.3355 40 1 7.0527 -3.4351 0.5532 41 1 7.0536 -3.4331 2.3332 42 1 7.2911 -5.9016 2.3350 43 1 7.2902 -5.9030 0.5551 44 1 11.5000 -3.6906 0.4689 45 1 11.8269 -5.4520 0.4690 46 1 11.7431 -4.5579 2.9209 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753868869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:34 Heat of formation + Delta-G solvation = -48.737124 kcal Electronic energy + Delta-G solvation = -27712.739761 eV Core-core repulsion = 23639.661378 eV Total energy + Delta-G solvation = -4073.078383 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.66778 -39.62752 -38.91926 -36.45525 -36.30327 -35.76386 -34.80367 -33.05869 -31.38252 -29.05581 -28.22932 -27.33188 -26.20568 -25.78036 -23.85064 -23.24253 -22.28789 -20.69833 -20.42824 -18.81634 -18.38112 -17.46939 -17.16744 -16.80345 -16.56712 -16.03010 -15.88352 -15.63794 -15.42156 -14.81722 -14.56474 -14.42466 -14.31081 -14.07965 -13.62102 -13.33920 -13.15394 -12.94811 -12.67418 -12.49893 -12.30542 -12.12251 -12.00758 -11.69516 -11.25735 -11.24501 -10.98668 -10.82043 -10.78730 -10.61985 -10.45798 -10.16813 -10.08744 -9.92881 -9.88542 -9.72258 -9.43724 -8.56481 -8.30578 -6.69941 -5.66760 -3.11957 1.24570 1.80519 2.62451 2.72215 2.94141 3.31782 3.45458 3.50565 3.54130 3.58165 4.33866 4.49412 4.52665 4.59180 4.66257 4.73617 4.97906 5.02156 5.11675 5.19489 5.25244 5.36517 5.43651 5.48163 5.52630 5.71180 5.73885 5.87754 5.89538 6.11556 6.29611 6.31157 6.33389 6.64966 6.66881 6.76084 6.83271 6.97822 7.10421 7.41628 7.72465 7.74000 7.75677 7.90299 8.45788 8.53172 9.30824 9.92579 10.40368 11.38827 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.002427 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.286546 B =11532.437293 C =12470.727346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.600 5.600 3 C -0.249 4.249 4 H 0.070 0.930 5 C 0.000 4.000 6 N -0.912 5.912 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.145 3.855 12 C 0.093 3.907 13 N -0.615 5.615 14 C 0.079 3.921 15 C 0.506 3.494 16 O -0.533 6.533 17 C -0.134 4.134 18 C -0.121 4.121 19 C 0.119 3.881 20 N -0.575 5.575 21 C 0.519 3.481 22 O -0.465 6.465 23 C 0.062 3.938 24 N -0.731 5.731 25 C 0.701 3.299 26 O -0.539 6.539 27 H 0.028 0.972 28 H 0.046 0.954 29 H -0.005 1.005 30 H 0.252 0.748 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.901 -21.730 0.824 28.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.323 5.323 3 C -0.379 4.379 4 H 0.088 0.912 5 C -0.198 4.198 6 N -0.558 5.558 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.031 4.031 13 N -0.349 5.349 14 C -0.065 4.065 15 C 0.293 3.707 16 O -0.409 6.409 17 C -0.175 4.175 18 C -0.160 4.160 19 C -0.002 4.002 20 N -0.321 5.321 21 C 0.306 3.694 22 O -0.334 6.334 23 C -0.066 4.066 24 N -0.396 5.396 25 C 0.401 3.599 26 O -0.412 6.412 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.014 0.986 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 17.521 -21.119 0.827 27.453 hybrid contribution 0.551 0.969 0.301 1.155 sum 18.072 -20.150 1.128 27.091 Atomic orbital electron populations 1.20819 0.82394 0.95587 0.99267 1.43977 1.01949 1.00647 1.85715 1.19282 0.97952 0.85213 1.35457 0.91226 1.25025 0.97733 0.98587 0.98433 1.70065 1.17969 1.27017 1.40701 0.86214 0.79014 0.83929 0.77229 1.21534 1.21747 1.20381 1.21101 0.95981 0.88104 0.93209 1.22600 0.95423 0.83326 1.01791 1.48102 1.05710 1.07916 1.73172 1.21764 0.97683 0.85654 1.01405 1.20488 0.82335 0.91074 0.76834 1.90748 1.67523 1.33583 1.49079 1.21559 0.94873 0.96782 1.04258 1.21672 0.93205 0.96330 1.04817 1.21774 0.74923 0.98661 1.04814 1.46376 1.11349 1.66408 1.08016 1.20909 0.88407 0.75139 0.84901 1.90852 1.78094 1.46595 1.17878 1.22481 0.96296 1.06477 0.81345 1.45429 1.09194 1.77194 1.07768 1.15889 0.81971 0.77719 0.84305 1.91042 1.74523 1.55261 1.20381 0.95381 0.93543 0.98617 0.93826 0.93595 0.94727 0.91535 0.89746 0.92932 0.90920 0.91454 0.88747 0.88793 0.90426 0.90251 0.88393 0.88528 0.85735 0.85892 0.71425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.12 9.01 59.84 0.54 4.66 16 2 N -0.60 -15.79 2.93 -181.12 -0.53 -16.32 16 3 C -0.25 -7.25 9.67 -15.06 -0.15 -7.39 16 4 H 0.07 2.04 7.84 -52.49 -0.41 1.63 16 5 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 6 N -0.91 -27.29 10.58 55.49 0.59 -26.70 16 7 Si 0.91 22.95 29.57 -169.99 -5.03 17.93 16 8 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 9 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 C 0.14 3.17 6.03 -4.04 -0.02 3.14 16 12 C 0.09 1.86 5.73 -4.04 -0.02 1.84 16 13 N -0.61 -9.62 2.87 -181.56 -0.52 -10.14 16 14 C 0.08 0.82 10.24 59.85 0.61 1.43 16 15 C 0.51 8.21 7.67 -10.99 -0.08 8.13 16 16 O -0.53 -11.35 15.56 5.55 0.09 -11.26 16 17 C -0.13 -1.41 4.25 -27.89 -0.12 -1.53 16 18 C -0.12 -1.38 4.83 -26.74 -0.13 -1.51 16 19 C 0.12 1.03 5.70 -4.04 -0.02 1.01 16 20 N -0.58 -5.22 2.60 -120.73 -0.31 -5.53 16 21 C 0.52 4.28 8.32 -10.55 -0.09 4.19 16 22 O -0.46 -5.27 17.75 5.60 0.10 -5.17 16 23 C 0.06 0.23 7.97 -4.32 -0.03 0.20 16 24 N -0.73 -3.84 6.58 -65.74 -0.43 -4.28 16 25 C 0.70 6.71 8.62 -88.02 -0.76 5.95 16 26 O -0.54 -7.20 17.48 5.33 0.09 -7.11 16 27 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 28 H 0.05 1.25 7.19 -51.93 -0.37 0.88 16 29 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 30 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.05 1.07 8.03 -51.93 -0.42 0.66 16 32 H 0.03 0.67 7.86 -51.93 -0.41 0.27 16 33 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 34 H 0.08 2.03 7.42 -51.93 -0.39 1.64 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 37 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 38 H 0.09 0.77 7.40 -51.93 -0.38 0.39 16 39 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 40 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 41 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 42 H 0.10 0.77 7.86 -51.93 -0.41 0.36 16 43 H 0.10 0.70 8.00 -51.93 -0.42 0.28 16 44 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.12 0.13 8.14 -51.93 -0.42 -0.29 16 46 H 0.44 1.28 8.96 -40.82 -0.37 0.91 16 LS Contribution 385.90 15.07 5.82 5.82 Total: -1.00 -39.00 385.90 -7.71 -46.71 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -7.20 Total: -3.95 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: -0.37 Total: 20.02 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -1.21 Total: -62.98 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.28 Total: -23.54 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.93 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.00 -7.71 -46.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753868869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.029 kcal (2) G-P(sol) polarization free energy of solvation -38.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds