Wall clock time and date at job start Tue Mar 31 2020 05:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 119.99644 * 2 1 4 4 H 1.08002 * 119.99651 * 202.34053 * 3 2 1 5 5 C 1.38806 * 120.00178 * 22.33985 * 3 2 1 6 6 N 1.31615 * 119.99886 * 11.34972 * 5 3 2 7 7 Si 1.86799 * 120.00084 * 191.34249 * 5 3 2 8 8 H 1.48502 * 109.47017 * 90.00431 * 7 5 3 9 9 H 1.48501 * 109.47463 * 210.00323 * 7 5 3 10 10 H 1.48500 * 109.47357 * 330.00482 * 7 5 3 11 11 C 1.46498 * 120.00622 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46959 * 270.00737 * 11 2 1 13 13 N 1.46507 * 109.46969 * 179.97438 * 12 11 2 14 14 C 1.46502 * 119.99571 * 269.99258 * 13 12 11 15 15 C 1.34774 * 120.00280 * 89.99740 * 13 12 11 16 16 O 1.21287 * 119.99834 * 359.97438 * 15 13 12 17 17 C 1.50696 * 120.00160 * 179.97438 * 15 13 12 18 18 C 1.52991 * 109.47519 * 179.97438 * 17 15 13 19 19 C 1.53001 * 109.47593 * 180.02562 * 18 17 15 20 20 N 1.46496 * 109.47214 * 180.02562 * 19 18 17 21 21 C 1.34770 * 124.17553 * 269.72337 * 20 19 18 22 22 O 1.21233 * 127.15690 * 0.02562 * 21 20 19 23 23 C 1.51582 * 105.68430 * 179.97438 * 21 20 19 24 24 N 1.47311 * 103.59402 * 0.32335 * 23 21 20 25 25 C 1.33789 * 124.18182 * 90.02541 * 20 19 18 26 26 O 1.21544 * 123.76740 * 359.95670 * 25 20 19 27 27 H 1.08996 * 109.47441 * 274.21512 * 1 2 3 28 28 H 1.09006 * 109.47344 * 34.21871 * 1 2 3 29 29 H 1.09003 * 109.47118 * 154.20992 * 1 2 3 30 30 H 0.97008 * 119.99777 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.48048 * 150.00274 * 11 2 1 32 32 H 1.09005 * 109.46730 * 29.99602 * 11 2 1 33 33 H 1.09001 * 109.47741 * 59.99315 * 12 11 2 34 34 H 1.09004 * 109.47200 * 299.98868 * 12 11 2 35 35 H 1.08999 * 109.47215 * 270.00337 * 14 13 12 36 36 H 1.09003 * 109.47036 * 30.00310 * 14 13 12 37 37 H 1.09001 * 109.46511 * 149.99977 * 14 13 12 38 38 H 1.09001 * 109.46815 * 59.99410 * 17 15 13 39 39 H 1.09003 * 109.47058 * 300.00523 * 17 15 13 40 40 H 1.08999 * 109.46981 * 300.00438 * 18 17 15 41 41 H 1.09001 * 109.47469 * 59.99920 * 18 17 15 42 42 H 1.08994 * 109.46788 * 299.99973 * 19 18 17 43 43 H 1.08998 * 109.47166 * 59.99884 * 19 18 17 44 44 H 1.09000 * 110.76854 * 241.71091 * 23 21 20 45 45 H 1.09002 * 110.56423 * 118.83026 * 23 21 20 46 46 H 0.96996 * 126.69026 * 179.77058 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2211 -0.3555 5 6 1.5336 2.3430 0.4569 6 7 0.3840 2.2691 1.0934 7 14 2.3365 4.0048 0.1686 8 1 1.8677 4.5632 -1.1251 9 1 1.9679 4.9304 1.2698 10 1 3.8121 3.8420 0.1319 11 6 2.1976 -1.2686 0.0006 12 6 2.4524 -1.7097 1.4433 13 7 3.1846 -2.9787 1.4439 14 6 2.4516 -4.2472 1.4446 15 6 4.5323 -2.9792 1.4438 16 8 5.1391 -1.9290 1.4428 17 6 5.2854 -4.2845 1.4450 18 6 6.7896 -4.0056 1.4440 19 6 7.5542 -5.3308 1.4445 20 7 8.9946 -5.0636 1.4442 21 6 9.7398 -4.9314 0.3290 22 8 9.3590 -5.0077 -0.8194 23 6 11.1527 -4.6660 0.8095 24 7 11.0294 -4.6889 2.2772 25 6 9.7339 -4.9265 2.5508 26 8 9.2853 -5.0089 3.6774 27 1 -0.3634 0.0755 1.0248 28 1 -0.3634 0.8498 -0.5779 29 1 -0.3633 -0.9253 -0.4471 30 1 -0.0463 3.0776 1.4130 31 1 3.1500 -1.1386 -0.5132 32 1 1.6085 -2.0286 -0.5129 33 1 1.5000 -1.8398 1.9572 34 1 3.0416 -0.9498 1.9569 35 1 2.2699 -4.5612 2.4725 36 1 1.4991 -4.1167 0.9308 37 1 3.0404 -5.0072 0.9311 38 1 5.0217 -4.8568 0.5556 39 1 5.0218 -4.8552 2.3355 40 1 7.0527 -3.4351 0.5532 41 1 7.0536 -3.4331 2.3332 42 1 7.2911 -5.9016 2.3350 43 1 7.2902 -5.9030 0.5551 44 1 11.5000 -3.6906 0.4689 45 1 11.8269 -5.4520 0.4690 46 1 11.7431 -4.5579 2.9209 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753868869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:33 Heat of formation + Delta-G solvation = -78.855392 kcal Electronic energy + Delta-G solvation = -27714.045788 eV Core-core repulsion = 23639.661378 eV Total energy + Delta-G solvation = -4074.384409 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.30569 -40.93354 -39.65609 -37.91643 -37.18914 -36.73003 -36.35026 -33.99863 -33.35227 -30.56863 -28.93199 -28.17151 -27.92854 -27.32592 -25.34533 -23.92639 -23.47265 -22.27680 -21.36080 -20.01937 -19.06270 -18.85195 -18.16249 -17.98481 -17.61383 -17.29835 -16.93735 -16.71321 -16.39809 -16.25674 -15.61121 -15.50818 -15.28686 -15.10753 -14.96625 -14.73162 -14.47717 -14.16366 -13.90983 -13.88222 -13.46022 -13.24979 -13.13217 -12.98439 -12.83162 -12.80639 -12.65234 -12.43218 -12.09736 -12.05910 -12.02882 -11.87214 -11.62313 -11.32593 -10.98254 -10.77378 -10.71245 -10.41667 -9.73798 -8.80029 -7.88902 -5.36681 0.61545 1.20018 1.40938 1.42219 1.51905 1.68988 1.91577 2.09695 2.29220 2.48217 3.06059 3.25125 3.52403 3.74281 3.75873 3.86648 4.06575 4.10000 4.27154 4.31492 4.37575 4.41041 4.45943 4.46240 4.58838 4.60378 4.66316 4.69730 4.80303 4.83170 4.97010 4.99687 5.02895 5.15979 5.19233 5.31573 5.54327 5.62717 5.70542 5.83455 6.02984 6.28580 6.38233 6.51270 7.09812 7.11360 7.26402 7.81747 8.22240 9.14239 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.002427 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.286546 B =11532.437293 C =12470.727346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.618 5.618 3 C -0.265 4.265 4 H 0.056 0.944 5 C -0.049 4.049 6 N -0.935 5.935 7 Si 0.967 3.033 8 H -0.279 1.279 9 H -0.288 1.288 10 H -0.279 1.279 11 C 0.150 3.850 12 C 0.111 3.889 13 N -0.614 5.614 14 C 0.070 3.930 15 C 0.494 3.506 16 O -0.598 6.598 17 C -0.119 4.119 18 C -0.113 4.113 19 C 0.121 3.879 20 N -0.582 5.582 21 C 0.513 3.487 22 O -0.501 6.501 23 C 0.072 3.928 24 N -0.712 5.712 25 C 0.693 3.307 26 O -0.585 6.585 27 H 0.007 0.993 28 H 0.019 0.981 29 H 0.037 0.963 30 H 0.250 0.750 31 H 0.023 0.977 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.150 0.850 45 H 0.163 0.837 46 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.935 -24.333 0.181 30.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.342 5.342 3 C -0.395 4.395 4 H 0.073 0.927 5 C -0.245 4.245 6 N -0.581 5.581 7 Si 0.795 3.205 8 H -0.205 1.205 9 H -0.215 1.215 10 H -0.204 1.204 11 C 0.023 3.977 12 C -0.015 4.015 13 N -0.347 5.347 14 C -0.071 4.071 15 C 0.284 3.716 16 O -0.479 6.479 17 C -0.159 4.159 18 C -0.152 4.152 19 C 0.000 4.000 20 N -0.328 5.328 21 C 0.302 3.698 22 O -0.373 6.373 23 C -0.055 4.055 24 N -0.377 5.377 25 C 0.394 3.606 26 O -0.462 6.462 27 H 0.025 0.975 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.128 0.872 43 H 0.134 0.866 44 H 0.168 0.832 45 H 0.180 0.820 46 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 18.587 -23.787 0.171 30.188 hybrid contribution 0.265 1.711 0.476 1.795 sum 18.852 -22.076 0.646 29.037 Atomic orbital electron populations 1.20604 0.81776 0.96445 0.97860 1.44181 1.02606 1.01340 1.86050 1.19412 0.97666 0.86945 1.35486 0.92663 1.25742 0.98489 1.01702 0.98519 1.70205 1.18927 1.27590 1.41389 0.85266 0.77988 0.79873 0.77334 1.20519 1.21459 1.20394 1.21126 0.94990 0.87262 0.94358 1.21953 0.95153 0.84677 0.99703 1.48139 1.05864 1.08179 1.72510 1.22154 0.98010 0.83571 1.03405 1.21588 0.82451 0.92379 0.75194 1.90723 1.68843 1.36384 1.51910 1.21594 0.93025 0.93789 1.07521 1.21536 0.94551 0.97256 1.01903 1.21774 0.74871 0.97016 1.06308 1.46505 1.11628 1.66207 1.08420 1.21616 0.90012 0.73996 0.84145 1.90833 1.79099 1.48309 1.19041 1.22729 0.93831 1.09139 0.79759 1.45418 1.07915 1.75374 1.08985 1.16103 0.83136 0.77683 0.83700 1.91006 1.75608 1.57591 1.21975 0.97476 0.96230 0.94485 0.94045 0.95867 0.91323 0.90821 0.94874 0.91014 0.90368 0.87686 0.85024 0.85413 0.93133 0.93454 0.87234 0.86557 0.83246 0.81954 0.69934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.94 9.01 127.77 1.15 10.09 16 2 N -0.62 -33.09 2.93 -726.95 -2.13 -35.22 16 3 C -0.26 -15.88 9.67 84.03 0.81 -15.06 16 4 H 0.06 3.40 7.84 -2.91 -0.02 3.37 16 5 C -0.05 -2.93 5.13 84.86 0.44 -2.50 16 6 N -0.93 -57.14 10.58 21.65 0.23 -56.91 16 7 Si 0.97 48.23 29.57 68.60 2.03 50.25 16 8 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 9 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 10 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 11 C 0.15 6.60 6.03 86.38 0.52 7.12 16 12 C 0.11 4.52 5.73 86.38 0.49 5.02 16 13 N -0.61 -18.57 2.87 -846.72 -2.43 -21.01 16 14 C 0.07 1.19 10.24 127.77 1.31 2.50 16 15 C 0.49 16.04 7.67 87.66 0.67 16.71 16 16 O -0.60 -27.00 15.56 -3.05 -0.05 -27.04 16 17 C -0.12 -2.27 4.25 29.84 0.13 -2.14 16 18 C -0.11 -2.58 4.83 30.59 0.15 -2.43 16 19 C 0.12 1.94 5.70 86.38 0.49 2.44 16 20 N -0.58 -10.05 2.60 -773.14 -2.01 -12.06 16 21 C 0.51 7.74 8.32 87.94 0.73 8.47 16 22 O -0.50 -10.91 17.75 -2.88 -0.05 -10.96 16 23 C 0.07 0.33 7.97 85.76 0.68 1.01 16 24 N -0.71 -6.05 6.58 -480.31 -3.16 -9.21 16 25 C 0.69 12.76 8.62 179.44 1.55 14.31 16 26 O -0.59 -15.71 17.48 -3.85 -0.07 -15.77 16 27 H 0.01 0.38 7.42 -2.39 -0.02 0.36 16 28 H 0.02 1.05 7.19 -2.38 -0.02 1.03 16 29 H 0.04 1.53 7.84 -2.39 -0.02 1.51 16 30 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 31 H 0.02 1.11 8.03 -2.39 -0.02 1.09 16 32 H 0.07 2.54 7.86 -2.38 -0.02 2.52 16 33 H 0.07 2.87 8.07 -2.39 -0.02 2.85 16 34 H 0.03 1.68 7.42 -2.39 -0.02 1.66 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.30 8.07 -2.39 -0.02 1.28 16 37 H 0.10 1.04 6.44 -2.39 -0.02 1.02 16 38 H 0.13 1.59 7.40 -2.39 -0.02 1.57 16 39 H 0.13 1.64 8.11 -2.39 -0.02 1.63 16 40 H 0.05 1.40 8.10 -2.39 -0.02 1.39 16 41 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 42 H 0.11 1.52 7.86 -2.39 -0.02 1.50 16 43 H 0.12 1.41 8.00 -2.39 -0.02 1.39 16 44 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.16 -0.37 8.14 -2.39 -0.02 -0.39 16 46 H 0.45 1.63 8.96 -92.71 -0.83 0.80 16 Total: -1.00 -92.23 385.90 1.64 -90.59 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 0.16 Total: 1.81 kcal Atomic # 6 Polarization: 36.41 SS G_CDS: 9.13 Total: 45.54 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -9.51 Total: -134.40 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: -0.17 Total: -53.78 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.25 kcal Total: -92.23 1.64 -90.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753868869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.730 kcal (2) G-P(sol) polarization free energy of solvation -92.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds