Wall clock time and date at job start Tue Mar 31 2020 04:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46866 * 2 1 4 4 C 1.52990 * 109.47216 * 239.99563 * 2 1 3 5 5 N 1.46906 * 109.47364 * 184.99697 * 4 2 1 6 6 C 1.46893 * 110.99828 * 293.96202 * 5 4 2 7 7 C 1.46893 * 111.00247 * 169.99786 * 5 4 2 8 8 C 1.50697 * 109.47306 * 190.00352 * 7 5 4 9 9 O 1.21295 * 119.99893 * 359.97438 * 8 7 5 10 10 N 1.34778 * 120.00381 * 180.02562 * 8 7 5 11 11 C 1.37092 * 120.00114 * 179.97438 * 10 8 7 12 12 H 1.07993 * 120.00199 * 0.02562 * 11 10 8 13 13 C 1.38958 * 119.99787 * 179.97438 * 11 10 8 14 14 N 1.31403 * 119.99929 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99674 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47110 * 90.00262 * 15 13 11 17 17 H 1.48505 * 109.46634 * 209.99879 * 15 13 11 18 18 H 1.48492 * 109.47251 * 330.00184 * 15 13 11 19 19 N 1.46501 * 109.46955 * 119.99393 * 2 1 3 20 20 C 1.34776 * 120.00353 * 274.72704 * 19 2 1 21 21 O 1.21281 * 119.99958 * 0.28017 * 20 19 2 22 22 C 1.50697 * 120.00061 * 180.27779 * 20 19 2 23 23 H 1.08999 * 115.55315 * 61.45457 * 22 20 19 24 24 C 1.53004 * 117.49807 * 207.16834 * 22 20 19 25 25 C 1.53002 * 60.00341 * 107.48811 * 24 22 20 26 26 H 1.08994 * 117.49689 * 107.48502 * 25 24 22 27 27 C 1.50702 * 117.49745 * 252.51144 * 25 24 22 28 28 N 1.34771 * 119.99701 * 152.96759 * 27 25 24 29 29 O 1.21275 * 120.00076 * 332.96918 * 27 25 24 30 30 H 1.09004 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47383 * 300.00269 * 1 2 3 32 32 H 1.08992 * 109.47127 * 60.00269 * 1 2 3 33 33 H 1.08999 * 109.47349 * 305.00351 * 4 2 1 34 34 H 1.09007 * 109.47166 * 65.00000 * 4 2 1 35 35 H 1.08996 * 109.47807 * 59.99776 * 6 5 4 36 36 H 1.09001 * 109.46841 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.46812 * 299.99211 * 6 5 4 38 38 H 1.08999 * 109.47526 * 310.01035 * 7 5 4 39 39 H 1.09009 * 109.46980 * 70.00431 * 7 5 4 40 40 H 0.97006 * 119.99633 * 0.02562 * 10 8 7 41 41 H 0.97005 * 120.00312 * 180.02562 * 14 13 11 42 42 H 0.97005 * 119.99489 * 95.00013 * 19 2 1 43 43 H 1.08996 * 117.49525 * 214.97957 * 24 22 20 44 44 H 1.08999 * 117.49923 * 359.97438 * 24 22 20 45 45 H 0.97001 * 120.00609 * 0.02562 * 28 27 25 46 46 H 0.97001 * 119.99984 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5041 -0.8267 -1.1903 6 6 4.1310 0.4993 -1.2718 7 6 4.0108 -1.7145 -2.2452 8 6 5.4725 -1.9938 -2.0076 9 8 6.0368 -1.5013 -1.0535 10 7 6.1531 -2.7900 -2.8557 11 6 7.4829 -3.0437 -2.6398 12 1 7.9851 -2.6058 -1.7898 13 6 8.1844 -3.8650 -3.5140 14 7 7.5733 -4.3981 -4.5478 15 14 9.9963 -4.2112 -3.2193 16 1 10.1372 -5.4181 -2.3657 17 1 10.6738 -4.4432 -4.5203 18 1 10.6181 -3.0476 -2.5378 19 7 2.0183 -0.6905 1.1963 20 6 2.1523 -0.0168 2.3558 21 8 1.8638 1.1600 2.4103 22 6 2.6605 -0.7256 3.5847 23 1 3.6669 -1.1370 3.5078 24 6 2.2209 -0.1826 4.9460 25 6 1.6431 -1.5001 4.4251 26 1 1.9804 -2.4207 4.9012 27 6 0.2095 -1.4957 3.9605 28 7 -0.2000 -2.3805 3.0300 29 8 -0.5756 -0.6959 4.4238 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8899 33 1 1.6054 -1.7198 -1.2950 34 1 1.7517 -0.1584 -2.1369 35 1 3.7911 1.1139 -0.4383 36 1 5.2148 0.3922 -1.2265 37 1 3.8524 0.9757 -2.2118 38 1 3.4546 -2.6517 -2.2297 39 1 3.8859 -1.2339 -3.2156 40 1 5.7021 -3.1830 -3.6194 41 1 8.0628 -4.9718 -5.1579 42 1 2.2490 -1.6317 1.1527 43 1 2.9383 -0.2366 5.7648 44 1 1.5645 0.6875 4.9526 45 1 0.4279 -3.0204 2.6596 46 1 -1.1228 -2.3779 2.7312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754325328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:12 Heat of formation + Delta-G solvation = -79.896923 kcal Electronic energy + Delta-G solvation = -28410.234513 eV Core-core repulsion = 24335.804939 eV Total energy + Delta-G solvation = -4074.429574 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.66425 -39.31819 -38.60519 -37.17465 -35.99437 -34.72105 -33.85763 -33.77465 -31.30826 -31.09247 -28.04490 -26.94943 -25.51600 -24.86494 -24.26893 -22.54390 -20.84004 -20.51739 -19.94206 -19.19400 -18.18405 -17.88129 -17.26154 -16.45215 -16.35469 -16.12765 -15.79530 -15.29097 -14.88972 -14.71045 -14.37004 -14.28856 -14.13699 -13.93506 -13.60385 -13.50216 -13.21719 -12.90333 -12.53143 -12.19300 -12.12735 -12.05448 -11.87657 -11.55209 -11.40556 -11.28481 -11.01361 -10.96330 -10.88809 -10.74684 -10.43286 -10.26196 -10.22902 -9.95470 -9.82832 -9.51950 -9.03017 -8.50838 -8.03116 -7.92393 -6.46336 -3.87137 2.23385 2.55704 2.98703 3.14033 3.17358 3.23248 3.28769 3.54038 3.85239 3.90150 4.19636 4.36677 4.47949 4.57559 4.71318 4.81538 4.98838 5.07488 5.08434 5.17360 5.22682 5.38358 5.44777 5.47352 5.51943 5.57281 5.66448 5.69561 5.90141 5.90750 5.92211 5.94466 6.05802 6.22845 6.48135 6.49783 6.55412 7.02507 7.18781 7.29635 7.50798 7.54995 7.98811 8.01790 8.25780 8.57103 9.13801 9.49840 10.01569 10.71369 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017052 B = 0.002662 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.630460 B =10516.267987 C =11126.803460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.148 3.852 3 H 0.087 0.913 4 C 0.043 3.957 5 N -0.514 5.514 6 C 0.021 3.979 7 C 0.045 3.955 8 C 0.443 3.557 9 O -0.577 6.577 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.929 3.071 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 N -0.697 5.697 20 C 0.541 3.459 21 O -0.538 6.538 22 C -0.165 4.165 23 H 0.143 0.857 24 C -0.114 4.114 25 C -0.178 4.178 26 H 0.139 0.861 27 C 0.546 3.454 28 N -0.848 5.848 29 O -0.534 6.534 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.014 0.986 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.391 0.609 41 H 0.271 0.729 42 H 0.404 0.596 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.403 0.597 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.824 1.326 9.538 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 H 0.105 0.895 4 C -0.086 4.086 5 N -0.238 5.238 6 C -0.127 4.127 7 C -0.086 4.086 8 C 0.229 3.771 9 O -0.461 6.461 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.756 3.244 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 N -0.347 5.347 20 C 0.326 3.674 21 O -0.414 6.414 22 C -0.186 4.186 23 H 0.161 0.839 24 C -0.152 4.152 25 C -0.199 4.199 26 H 0.157 0.843 27 C 0.330 3.670 28 N -0.411 5.411 29 O -0.410 6.410 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.032 0.968 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.238 0.762 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.231 0.769 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -14.806 2.774 10.904 18.597 hybrid contribution 0.559 -1.148 -1.730 2.150 sum -14.247 1.625 9.175 17.023 Atomic orbital electron populations 1.22132 0.95109 1.02047 1.02569 1.20937 0.93224 0.97703 0.83872 0.89495 1.22498 0.89300 1.00777 0.96048 1.61577 1.03045 1.12263 1.46866 1.22561 1.03044 0.88470 0.98608 1.21879 0.96387 0.97484 0.92892 1.19718 0.87670 0.84187 0.85538 1.90492 1.69982 1.54205 1.31399 1.41873 1.10383 1.42868 1.24974 1.19685 0.84943 1.27165 1.11038 0.87930 1.25254 1.00478 0.96707 0.95462 1.69605 1.37476 1.32856 1.14405 0.85871 0.81981 0.78952 0.77577 1.20391 1.20946 1.19417 1.45680 1.66260 1.14103 1.08699 1.19492 0.77250 0.86802 0.83820 1.90705 1.49943 1.15840 1.84951 1.22407 1.00137 1.03873 0.92172 0.83924 1.22983 1.01746 0.95811 0.94654 1.22334 0.91624 1.00102 1.05844 0.84317 1.19609 0.88833 0.79943 0.78633 1.43762 1.15582 1.37932 1.43837 1.90763 1.55459 1.38444 1.56316 0.92440 0.91952 0.91737 0.90317 0.93572 0.92098 0.88578 0.96754 0.89489 0.93506 0.77543 0.91863 0.76165 0.86816 0.86742 0.76898 0.76728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.49 37.16 0.35 -1.14 16 2 C 0.15 1.63 2.35 -67.93 -0.16 1.47 16 3 H 0.09 1.17 6.23 -51.93 -0.32 0.85 16 4 C 0.04 0.46 4.52 -3.83 -0.02 0.44 16 5 N -0.51 -7.53 4.22 -244.38 -1.03 -8.56 16 6 C 0.02 0.33 8.96 60.06 0.54 0.87 16 7 C 0.04 0.72 5.45 -4.98 -0.03 0.70 16 8 C 0.44 9.79 7.47 -10.99 -0.08 9.71 16 9 O -0.58 -14.63 13.91 5.54 0.08 -14.56 16 10 N -0.56 -13.62 5.29 -10.96 -0.06 -13.68 16 11 C -0.30 -8.03 9.68 -14.93 -0.14 -8.18 16 12 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -23.87 13.05 55.50 0.72 -23.14 16 15 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 N -0.70 -7.56 4.80 -53.81 -0.26 -7.82 16 20 C 0.54 7.02 6.49 -10.99 -0.07 6.95 16 21 O -0.54 -9.15 16.26 5.56 0.09 -9.06 16 22 C -0.16 -1.63 6.18 -91.77 -0.57 -2.20 16 23 H 0.14 1.23 8.14 -51.93 -0.42 0.80 16 24 C -0.11 -1.12 9.56 -26.73 -0.26 -1.37 16 25 C -0.18 -1.49 6.18 -91.76 -0.57 -2.06 16 26 H 0.14 0.76 8.14 -51.93 -0.42 0.33 16 27 C 0.55 5.64 6.79 -10.99 -0.07 5.57 16 28 N -0.85 -5.39 8.87 31.22 0.28 -5.11 16 29 O -0.53 -8.01 17.43 5.56 0.10 -7.92 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.72 7.93 -51.93 -0.41 0.31 16 34 H 0.05 0.48 8.12 -51.93 -0.42 0.05 16 35 H 0.06 0.94 6.58 -51.93 -0.34 0.60 16 36 H 0.10 1.88 5.82 -51.93 -0.30 1.57 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 1.22 7.93 -51.93 -0.41 0.81 16 39 H 0.05 0.71 8.12 -51.92 -0.42 0.29 16 40 H 0.39 9.06 7.90 -40.82 -0.32 8.73 16 41 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.40 3.78 8.60 -40.82 -0.35 3.43 16 43 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.11 1.44 7.71 -51.93 -0.40 1.04 16 45 H 0.40 1.54 8.83 -40.82 -0.36 1.18 16 46 H 0.40 2.29 8.93 -40.82 -0.36 1.93 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -35.39 388.49 -7.33 -42.71 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -6.90 Total: 14.56 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -1.17 Total: 11.25 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.35 Total: -58.31 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: 0.26 Total: -31.54 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.39 -7.33 -42.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754325328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.184 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds